BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00018121
         (863 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003564776.1| PREDICTED: DNA-directed RNA polymerase D sub...   110   4e-22
ref|XP_003577435.1| PREDICTED: DNA-directed RNA polymerase D sub...   110   5e-22
ref|XP_003580654.1| PREDICTED: DNA-directed RNA polymerase D sub...   108   2e-21
ref|XP_002468227.1| hypothetical protein SORBIDRAFT_01g042100 [S...   108   2e-21
tpg|DAA35758.1| TPA: putative DNA-directed RNA polymerase subuni...   107   5e-21

>ref|XP_003564776.1| PREDICTED: DNA-directed RNA polymerase D subunit 2a-like
           [Brachypodium distachyon]
          Length = 1213

 Score =  110 bits (275), Expect = 4e-22
 Identities = 50/72 (69%), Positives = 61/72 (84%)
 Frame = -1

Query: 218 LSKLCREASRSFFKEYGLLSHQIQSYNDFVENGVQKVFDDIGEIDVEPGYDPSKKGGDGG 39
           L K C+EASRSFF+E GL+SHQI SYN+FV +G+Q++FD +GE+ VEPGYDPSKK G GG
Sbjct: 66  LEKFCKEASRSFFEEIGLISHQINSYNEFVSHGLQELFDSLGEVTVEPGYDPSKK-GPGG 124

Query: 38  WRRAKVKFGKVK 3
           WR A +KFGKVK
Sbjct: 125 WRHAIIKFGKVK 136


>ref|XP_003577435.1| PREDICTED: DNA-directed RNA polymerase D subunit 2a-like
           [Brachypodium distachyon]
          Length = 1213

 Score =  110 bits (274), Expect = 5e-22
 Identities = 49/72 (68%), Positives = 61/72 (84%)
 Frame = -1

Query: 218 LSKLCREASRSFFKEYGLLSHQIQSYNDFVENGVQKVFDDIGEIDVEPGYDPSKKGGDGG 39
           L K C+EASRSFF+E GL+SHQI SYN+F+ +G+Q++FD +GE+ VEPGYDPSKK G GG
Sbjct: 66  LEKFCKEASRSFFEEIGLISHQINSYNEFISHGLQELFDSLGEVTVEPGYDPSKK-GPGG 124

Query: 38  WRRAKVKFGKVK 3
           WR A +KFGKVK
Sbjct: 125 WRHAIIKFGKVK 136


>ref|XP_003580654.1| PREDICTED: DNA-directed RNA polymerase D subunit 2a-like
           [Brachypodium distachyon]
          Length = 1236

 Score =  108 bits (270), Expect = 2e-21
 Identities = 49/72 (68%), Positives = 59/72 (81%)
 Frame = -1

Query: 218 LSKLCREASRSFFKEYGLLSHQIQSYNDFVENGVQKVFDDIGEIDVEPGYDPSKKGGDGG 39
           L K C+EASRSFF E GL+SHQI SYNDF+ +G+Q++FD +GE+ VEP YDPSKK G GG
Sbjct: 88  LEKFCKEASRSFFDEIGLISHQINSYNDFISHGLQELFDSLGEVTVEPSYDPSKK-GPGG 146

Query: 38  WRRAKVKFGKVK 3
           WR A +KFGKVK
Sbjct: 147 WRHAIIKFGKVK 158


>ref|XP_002468227.1| hypothetical protein SORBIDRAFT_01g042100 [Sorghum bicolor]
           gi|241922081|gb|EER95225.1| hypothetical protein
           SORBIDRAFT_01g042100 [Sorghum bicolor]
          Length = 1228

 Score =  108 bits (270), Expect = 2e-21
 Identities = 49/72 (68%), Positives = 60/72 (83%)
 Frame = -1

Query: 218 LSKLCREASRSFFKEYGLLSHQIQSYNDFVENGVQKVFDDIGEIDVEPGYDPSKKGGDGG 39
           L K C+EASRSFF E GL+SHQI SYNDFV +G+Q++FD +GE+ VEPGYDPSKK G GG
Sbjct: 86  LEKFCKEASRSFFDEVGLISHQINSYNDFVSHGLQELFDSLGEVIVEPGYDPSKK-GSGG 144

Query: 38  WRRAKVKFGKVK 3
           W+ A +KFG+VK
Sbjct: 145 WKHAIIKFGRVK 156


>tpg|DAA35758.1| TPA: putative DNA-directed RNA polymerase subunit family protein
           [Zea mays]
          Length = 1063

 Score =  107 bits (266), Expect = 5e-21
 Identities = 48/72 (66%), Positives = 60/72 (83%)
 Frame = -1

Query: 218 LSKLCREASRSFFKEYGLLSHQIQSYNDFVENGVQKVFDDIGEIDVEPGYDPSKKGGDGG 39
           L K C+EASRSFF E GL+SHQI SYN+FV +G+Q++FD +GE+ VEPGYDPSKK G GG
Sbjct: 87  LEKFCKEASRSFFDEVGLISHQINSYNEFVSHGLQELFDSLGEVIVEPGYDPSKK-GSGG 145

Query: 38  WRRAKVKFGKVK 3
           W+ A +KFG+VK
Sbjct: 146 WKHAIIKFGRVK 157