BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00018111
         (1180 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004149836.1| PREDICTED: shikimate kinase, chloroplastic-l...   291   2e-76
ref|XP_002273840.1| PREDICTED: shikimate kinase, chloroplastic [...   290   5e-76
ref|XP_003518273.1| PREDICTED: shikimate kinase, chloroplastic [...   281   2e-73
ref|XP_002512880.1| protein with unknown function [Ricinus commu...   278   2e-72
ref|XP_002328924.1| shikimate kinase [Populus trichocarpa] gi|22...   275   2e-71

>ref|XP_004149836.1| PREDICTED: shikimate kinase, chloroplastic-like [Cucumis sativus]
           gi|449522321|ref|XP_004168175.1| PREDICTED: shikimate
           kinase, chloroplastic-like [Cucumis sativus]
          Length = 307

 Score =  291 bits (745), Expect = 2e-76
 Identities = 159/307 (51%), Positives = 211/307 (68%), Gaps = 8/307 (2%)
 Frame = +3

Query: 6   METRTLLQSSITTSLNFYTHQLSSLSLINTKPFHFQRTHT----TSLP----PAKLTKPI 161
           M+ +T++  S  T L F TH   S +L     F      +     SLP    P  +    
Sbjct: 3   MKFKTIV--SPLTDLQFNTHLPKSEALALNSSFSLSLPSSLRRNNSLPLHICPPFIQSSA 60

Query: 162 TPTLRISPSRCSLQDEQLPGVDKNVVGQDHSVALKNKAAEISSQLKGTSIFLVGINNNIK 341
               R  PS C   D     V+  V   D S+ +K KA +++ +LKGTSIFLVGIN++IK
Sbjct: 61  IRRRRSLPSSCLASDGTALNVEAKVTVDDLSLEVKKKAMDVAPELKGTSIFLVGINSSIK 120

Query: 342 AKLGNFLADMLRYYYFDSDSLVEQAAGGEAAAKSFPEKDDKGFLESETEVLRQLSSMGRL 521
            KLG  LAD+LRYYYFDSDSLV + +GGEAAAK + + D+KGF   ETEVL+QLSSMGRL
Sbjct: 121 TKLGKLLADVLRYYYFDSDSLVVEVSGGEAAAKLYKQSDEKGFQAFETEVLKQLSSMGRL 180

Query: 522 VICAGDGAVKSSTNLSFMRHGISIWIDVPIVVLAKEVKESGNQPPPADVILNSDPSKAVA 701
           V+CAG+GAV+SSTNL+ +RHGI++WID+P+ ++A+E  E  +Q P  D+  +   S+ + 
Sbjct: 181 VVCAGNGAVQSSTNLALLRHGITLWIDLPLQMIAEEFAEDRSQHPVFDISTSGSYSEVLG 240

Query: 702 KLTELYERMRGGYATADATISLQKVASQLGYDDTDAVTIEDMAMEAFREIEKLTRVKKMM 881
           ++T LY++++ GYATADA ISLQK+AS+LGYDD +AVT EDMAMEA +EIEKLTRVKKM+
Sbjct: 241 QITSLYQKVKDGYATADALISLQKLASKLGYDDFNAVTTEDMAMEALKEIEKLTRVKKMI 300

Query: 882 EAAARPF 902
           EAAA+PF
Sbjct: 301 EAAAKPF 307


>ref|XP_002273840.1| PREDICTED: shikimate kinase, chloroplastic [Vitis vinifera]
           gi|296082301|emb|CBI21306.3| unnamed protein product
           [Vitis vinifera]
          Length = 305

 Score =  290 bits (742), Expect = 5e-76
 Identities = 156/258 (60%), Positives = 189/258 (73%), Gaps = 9/258 (3%)
 Frame = +3

Query: 156 PITPTLRISPSRCSLQDEQLPGVDK----NVVGQDHSVALKNKAAEISSQLKGTSIFLVG 323
           P  P L  SP   S+      G        VV  D S+A+K KA EIS  LKGTSIFLVG
Sbjct: 48  PCVPPLTSSPKSLSITFSLPDGASSISATKVVDVDLSLAVKKKAMEISPVLKGTSIFLVG 107

Query: 324 INNNIKAKLGNFLADMLRYYYFDSDSLVEQAAGGEAAAKSFPEKDDKGFLESETEVLRQL 503
           +N+ IK  +G  LAD LRYY+FDSDSLVE+A GGE+AAKS  E+D+KGF +SETEVL+QL
Sbjct: 108 MNSTIKTNVGKLLADALRYYHFDSDSLVEEACGGESAAKSLKEQDEKGFHDSETEVLKQL 167

Query: 504 SSMGRLVICAGDGAVKSSTNLSFMRHGISIWIDVPIVVLAKEVKESGNQPP-----PADV 668
           SSMGRLV+CAGDG V+SSTNL+ +RHGISIWIDVPI ++AK + E G Q P      A+ 
Sbjct: 168 SSMGRLVVCAGDGLVQSSTNLALLRHGISIWIDVPIEMVAKNMIEEGVQIPVTELSTAES 227

Query: 669 ILNSDPSKAVAKLTELYERMRGGYATADATISLQKVASQLGYDDTDAVTIEDMAMEAFRE 848
              +  ++  A+L  +YE M+GGYATADA++SLQKVASQLGYDD DAVT EDMAME  +E
Sbjct: 228 YSETGDNQVFAQLAVVYEEMKGGYATADASVSLQKVASQLGYDDLDAVTTEDMAMEVLKE 287

Query: 849 IEKLTRVKKMMEAAARPF 902
           I++LTR+KKMME AARPF
Sbjct: 288 IQRLTRLKKMMEEAARPF 305


>ref|XP_003518273.1| PREDICTED: shikimate kinase, chloroplastic [Glycine max]
          Length = 280

 Score =  281 bits (719), Expect = 2e-73
 Identities = 153/280 (54%), Positives = 195/280 (69%)
 Frame = +3

Query: 63  HQLSSLSLINTKPFHFQRTHTTSLPPAKLTKPITPTLRISPSRCSLQDEQLPGVDKNVVG 242
           H+ + L L+N      Q  H  S     L  P     R+    CS+ D     V  ++  
Sbjct: 8   HRNTPLPLLNRPSNFLQFKHQNSF----LKFPNPNLHRLRRLNCSVSDGT---VSSSLGA 60

Query: 243 QDHSVALKNKAAEISSQLKGTSIFLVGINNNIKAKLGNFLADMLRYYYFDSDSLVEQAAG 422
            D S+A+K KAAE+SS+LKGTSIFLVG+ +++K  LG  LAD LRYYYFDSDSLVE+A G
Sbjct: 61  TDSSLAVKKKAAEVSSELKGTSIFLVGLKSSLKTSLGKLLADALRYYYFDSDSLVEEAVG 120

Query: 423 GEAAAKSFPEKDDKGFLESETEVLRQLSSMGRLVICAGDGAVKSSTNLSFMRHGISIWID 602
           G  AAKSF E D+KGF ESETEVL+QLSSMGRLV+CAG+G V SSTNL+ +RHGIS+WID
Sbjct: 121 GALAAKSFRESDEKGFYESETEVLKQLSSMGRLVVCAGNGTVTSSTNLALLRHGISLWID 180

Query: 603 VPIVVLAKEVKESGNQPPPADVILNSDPSKAVAKLTELYERMRGGYATADATISLQKVAS 782
           VP+  +A++V E  +Q  P+++ ++    +   +L  LY++ R GYATADA IS+QKV S
Sbjct: 181 VPLDFVARDVIEDKSQFAPSEISISGSYPEVQDELGALYDKYRVGYATADAIISVQKVVS 240

Query: 783 QLGYDDTDAVTIEDMAMEAFREIEKLTRVKKMMEAAARPF 902
           +LG D+ D +T EDMA+EA REIEKLTRVKKM E AARPF
Sbjct: 241 RLGCDNLDEITREDMALEALREIEKLTRVKKMQEEAARPF 280


>ref|XP_002512880.1| protein with unknown function [Ricinus communis]
           gi|223547891|gb|EEF49383.1| protein with unknown
           function [Ricinus communis]
          Length = 292

 Score =  278 bits (711), Expect = 2e-72
 Identities = 147/237 (62%), Positives = 179/237 (75%)
 Frame = +3

Query: 192 CSLQDEQLPGVDKNVVGQDHSVALKNKAAEISSQLKGTSIFLVGINNNIKAKLGNFLADM 371
           CSL DE      +  V  D S+ALK +AA+IS +LKGTSIFLVG+ +++K  LG  LAD 
Sbjct: 64  CSLSDETTTSTTEVTV-LDSSLALKKRAADISPELKGTSIFLVGMRSSMKTSLGKLLADS 122

Query: 372 LRYYYFDSDSLVEQAAGGEAAAKSFPEKDDKGFLESETEVLRQLSSMGRLVICAGDGAVK 551
           LRYYYFDSDSLVE+ A G +AAKSF E D+KGF ESETEVL+QLSSMGRLV+CAGDGAV+
Sbjct: 123 LRYYYFDSDSLVEEVASGASAAKSFKETDEKGFRESETEVLKQLSSMGRLVVCAGDGAVQ 182

Query: 552 SSTNLSFMRHGISIWIDVPIVVLAKEVKESGNQPPPADVILNSDPSKAVAKLTELYERMR 731
           S TNL+ +RHGIS+WIDVP+ ++A+ + E  +Q   AD       S+ + +L   +E MR
Sbjct: 183 SFTNLALLRHGISLWIDVPLDMVAQAMSEESDQLSGAD-------SEELTELIATFEAMR 235

Query: 732 GGYATADATISLQKVASQLGYDDTDAVTIEDMAMEAFREIEKLTRVKKMMEAAARPF 902
           GGYATADATISLQKVA  LGYD  D+VT EDM +E  +EIEKLTRVKKM+E AARPF
Sbjct: 236 GGYATADATISLQKVAVNLGYDALDSVTAEDMTLEVLKEIEKLTRVKKMLEEAARPF 292


>ref|XP_002328924.1| shikimate kinase [Populus trichocarpa] gi|222839354|gb|EEE77691.1|
           shikimate kinase [Populus trichocarpa]
          Length = 286

 Score =  275 bits (703), Expect = 2e-71
 Identities = 150/297 (50%), Positives = 202/297 (68%), Gaps = 3/297 (1%)
 Frame = +3

Query: 21  LLQSSITTSLNFYTHQLSSLSLINT---KPFHFQRTHTTSLPPAKLTKPITPTLRISPSR 191
           + +++ T++L    H LS  SL +T   +P  +  +  +  P       +T T       
Sbjct: 3   ITKATATSTLAAAIHNLSLSSLSSTIRPRPRPYSHSGFSKFPLVSRPTSLTAT------- 55

Query: 192 CSLQDEQLPGVDKNVVGQDHSVALKNKAAEISSQLKGTSIFLVGINNNIKAKLGNFLADM 371
           CSL +E      K V G D S+ +K +AA++S +LKGTSIFL+G+   +K  LG  LAD 
Sbjct: 56  CSLPNETTTSTTK-VAGADTSLQVKKRAADLSPELKGTSIFLLGMRGPLKTNLGKLLADA 114

Query: 372 LRYYYFDSDSLVEQAAGGEAAAKSFPEKDDKGFLESETEVLRQLSSMGRLVICAGDGAVK 551
           LRYY+F+SDSLVE+AAGGE AA+S  E+D+KGF ESETEVL+QL+SMGRLV+CAGDGAV+
Sbjct: 115 LRYYFFNSDSLVEEAAGGEFAARSLKERDEKGFRESETEVLKQLTSMGRLVVCAGDGAVQ 174

Query: 552 SSTNLSFMRHGISIWIDVPIVVLAKEVKESGNQPPPADVILNSDPSKAVAKLTELYERMR 731
           SSTNL  +RHGIS+WIDVP+ ++A+ V E   Q     +  +   S+ + ++   YE +R
Sbjct: 175 SSTNLGLLRHGISLWIDVPLDIVARGVVEDKTQ-----LAASESHSEVLEQVVATYEELR 229

Query: 732 GGYATADATISLQKVASQLGYDDTDAVTIEDMAMEAFREIEKLTRVKKMMEAAARPF 902
            GYATADA ISLQ +A +LGYD+ D+VT ED+A+E  +EIEKLTRVKKMME AARPF
Sbjct: 230 AGYATADAKISLQNIAVKLGYDELDSVTTEDLALEVLKEIEKLTRVKKMMEEAARPF 286