BLASTX nr result
ID: Coptis21_contig00017981
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis21_contig00017981
(725 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002875791.1| hypothetical protein ARALYDRAFT_485028 [Arab... 69 5e-18
gb|AAM63666.1| unknown [Arabidopsis thaliana] 67 2e-17
ref|NP_190242.1| methyl-CPG-binding domain protein 5 [Arabidopsi... 67 2e-17
ref|NP_200746.1| methyl-CPG-binding domain 6 protein [Arabidopsi... 70 3e-17
ref|XP_003632148.1| PREDICTED: methyl-CpG-binding domain-contain... 66 1e-16
>ref|XP_002875791.1| hypothetical protein ARALYDRAFT_485028 [Arabidopsis lyrata subsp.
lyrata] gi|297321629|gb|EFH52050.1| hypothetical protein
ARALYDRAFT_485028 [Arabidopsis lyrata subsp. lyrata]
Length = 181
Score = 68.9 bits (167), Expect(2) = 5e-18
Identities = 37/111 (33%), Positives = 54/111 (48%), Gaps = 16/111 (14%)
Frame = -3
Query: 384 YYYEPIKNRQFRSKREVLEYMAGKTSARSHKKSKNNEETASSSPMKSS------------ 241
+YYEPI R+FRSK EVL Y+ ++ KK++N + + S + S
Sbjct: 58 FYYEPITGRKFRSKNEVLYYLEHGAPKKAVKKAENGDSLSEHSEGRGSIRRQTKSNKKAN 117
Query: 240 ----QPIKVDLDSPPEKVKWVLGNSSGISWMPFIGDEWVPEHIKLGWAEMF 100
+P+ D + PEKV W N S +W+PFIGD + E + W F
Sbjct: 118 EPPPKPLNFDFLNVPEKVTWTGINGSEEAWLPFIGDYKIQESVSQDWGRAF 168
Score = 48.1 bits (113), Expect(2) = 5e-18
Identities = 18/31 (58%), Positives = 22/31 (70%)
Frame = -1
Query: 557 DWLPPDWKVVTRTRPNGKSAGTKDTYYYEPI 465
+WLPPDW+ R R +G AGT D +YYEPI
Sbjct: 33 NWLPPDWRTEVRVRTSGTKAGTVDKFYYEPI 63
>gb|AAM63666.1| unknown [Arabidopsis thaliana]
Length = 182
Score = 67.0 bits (162), Expect(2) = 2e-17
Identities = 40/122 (32%), Positives = 57/122 (46%), Gaps = 17/122 (13%)
Frame = -3
Query: 384 YYYEPIKNRQFRSKREVLEYMA-GKTSARSHKKSKNNEETASSSPMKSS----------- 241
+YYEPI R+FRSK EVL Y+ G +S K ++N + + S + S
Sbjct: 58 FYYEPITGRKFRSKNEVLYYLEHGTPKKKSVKTAENGDSHSEHSEGRGSARRQTKSNKKV 117
Query: 240 -----QPIKVDLDSPPEKVKWVLGNSSGISWMPFIGDEWVPEHIKLGWAEMFNQAYSSGG 76
+P+ D + PEKV W N S +W+PFIGD + E + W +F S
Sbjct: 118 TEPPPKPLNFDFLNVPEKVTWTGINGSEETWLPFIGDYKIQESVSQDWDRVFTLVTSQNA 177
Query: 75 CK 70
K
Sbjct: 178 GK 179
Score = 47.8 bits (112), Expect(2) = 2e-17
Identities = 18/31 (58%), Positives = 22/31 (70%)
Frame = -1
Query: 557 DWLPPDWKVVTRTRPNGKSAGTKDTYYYEPI 465
+WLPPDW+ R R +G AGT D +YYEPI
Sbjct: 33 NWLPPDWRTEIRVRTSGTKAGTVDKFYYEPI 63
>ref|NP_190242.1| methyl-CPG-binding domain protein 5 [Arabidopsis thaliana]
gi|75206905|sp|Q9SNC0.1|MBD5_ARATH RecName:
Full=Methyl-CpG-binding domain-containing protein 5;
Short=AtMBD5; Short=MBD05; AltName:
Full=Methyl-CpG-binding protein MBD5
gi|6523061|emb|CAB62328.1| putative protein [Arabidopsis
thaliana] gi|17380750|gb|AAL36205.1| unknown protein
[Arabidopsis thaliana] gi|23296870|gb|AAN13191.1|
unknown protein [Arabidopsis thaliana]
gi|332644653|gb|AEE78174.1| methyl-CPG-binding domain
protein 5 [Arabidopsis thaliana]
Length = 182
Score = 67.0 bits (162), Expect(2) = 2e-17
Identities = 40/122 (32%), Positives = 57/122 (46%), Gaps = 17/122 (13%)
Frame = -3
Query: 384 YYYEPIKNRQFRSKREVLEYMA-GKTSARSHKKSKNNEETASSSPMKSS----------- 241
+YYEPI R+FRSK EVL Y+ G +S K ++N + + S + S
Sbjct: 58 FYYEPITGRKFRSKNEVLYYLEHGTPKKKSVKTAENGDSHSEHSEGRGSARRQTKSNKKV 117
Query: 240 -----QPIKVDLDSPPEKVKWVLGNSSGISWMPFIGDEWVPEHIKLGWAEMFNQAYSSGG 76
+P+ D + PEKV W N S +W+PFIGD + E + W +F S
Sbjct: 118 TEPPPKPLNFDFLNVPEKVTWTGINGSEEAWLPFIGDYKIQESVSQDWDRVFTLVTSQNA 177
Query: 75 CK 70
K
Sbjct: 178 GK 179
Score = 47.8 bits (112), Expect(2) = 2e-17
Identities = 18/31 (58%), Positives = 22/31 (70%)
Frame = -1
Query: 557 DWLPPDWKVVTRTRPNGKSAGTKDTYYYEPI 465
+WLPPDW+ R R +G AGT D +YYEPI
Sbjct: 33 NWLPPDWRTEIRVRTSGTKAGTVDKFYYEPI 63
>ref|NP_200746.1| methyl-CPG-binding domain 6 protein [Arabidopsis thaliana]
gi|75180469|sp|Q9LTJ1.1|MBD6_ARATH RecName:
Full=Methyl-CpG-binding domain-containing protein 6;
Short=AtMBD6; Short=MBD06; AltName:
Full=Methyl-CpG-binding protein MBD6
gi|8885544|dbj|BAA97474.1| unnamed protein product
[Arabidopsis thaliana] gi|28416643|gb|AAO42852.1|
At5g59380 [Arabidopsis thaliana]
gi|110743343|dbj|BAE99559.1| hypothetical protein
[Arabidopsis thaliana] gi|332009795|gb|AED97178.1|
methyl-CPG-binding domain 6 protein [Arabidopsis
thaliana]
Length = 225
Score = 70.5 bits (171), Expect(2) = 3e-17
Identities = 38/109 (34%), Positives = 56/109 (51%), Gaps = 14/109 (12%)
Frame = -3
Query: 384 YYYEPIKNRQFRSKREVLEYMAGKTSARSHKKSKN-------------NEETASSS-PMK 247
YYYEP R+FRS+ EVL Y+ TS R KK++N N T +++ P
Sbjct: 104 YYYEPNTGRKFRSRTEVLYYLEHGTSKRGTKKAENTYFNPDHFEGQGSNRVTRTATVPPP 163
Query: 246 SSQPIKVDLDSPPEKVKWVLGNSSGISWMPFIGDEWVPEHIKLGWAEMF 100
P+ D +PP+KV W + N+ W+P IGD V + ++ W+ F
Sbjct: 164 PPPPLDFDFKNPPDKVSWSMANAGEEGWIPNIGDVKVQDSVRRDWSTAF 212
Score = 43.9 bits (102), Expect(2) = 3e-17
Identities = 16/30 (53%), Positives = 22/30 (73%)
Frame = -1
Query: 557 DWLPPDWKVVTRTRPNGKSAGTKDTYYYEP 468
+WLPP W+V + R +G +AG+ D YYYEP
Sbjct: 79 NWLPPGWRVEDKIRTSGATAGSVDKYYYEP 108
>ref|XP_003632148.1| PREDICTED: methyl-CpG-binding domain-containing protein 6-like
[Vitis vinifera]
Length = 297
Score = 65.9 bits (159), Expect(2) = 1e-16
Identities = 38/97 (39%), Positives = 52/97 (53%), Gaps = 2/97 (2%)
Frame = -3
Query: 384 YYYEPIKNRQFRSKREVLEYM-AGKTSARSHKKSKNNEETASSSPMKSSQPIKVDLDSPP 208
Y+ EPI R+FRSK+EV Y+ G+ + K N+ E + SP P+ + + P
Sbjct: 195 YFIEPITGRRFRSKKEVRYYLETGEVRKKPKKNPDNSPEKGTKSP-----PLNFNFEDVP 249
Query: 207 EKVKWV-LGNSSGISWMPFIGDEWVPEHIKLGWAEMF 100
+ VKWV G+S G W PFI + VPE K WA F
Sbjct: 250 DTVKWVRTGSSEG--WTPFINGQEVPESSKRDWAAAF 284
Score = 46.6 bits (109), Expect(2) = 1e-16
Identities = 22/52 (42%), Positives = 32/52 (61%)
Frame = -1
Query: 620 KKRKKRSGMDLAVVLDPEKNPDWLPPDWKVVTRTRPNGKSAGTKDTYYYEPI 465
++ +KR+ A + E+ DWLPP W V R R +G SAG++D Y+ EPI
Sbjct: 150 RRGRKRASEATASMASVERE-DWLPPGWIVEGRVRSSGASAGSRDKYFIEPI 200