BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00017709
         (1006 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABF17940.1| putative chloroplast chlorophyll a/b-binding prot...   330   9e-98
gb|ABD38707.1| chloroplast chlorophyll a/b binding protein [Pach...   328   6e-97
ref|XP_002306927.1| light-harvesting complex II protein Lhcb1 [P...   330   1e-96
ref|XP_002307725.1| light-harvesting complex II protein Lhcb1 [P...   330   1e-96
gb|AAA50310.1| light-harvesting chlorophyll a/b-binding protein ...   331   1e-96

>gb|ABF17940.1| putative chloroplast chlorophyll a/b-binding protein [Carya
           cathayensis]
          Length = 267

 Score =  330 bits (845), Expect(2) = 9e-98
 Identities = 155/162 (95%), Positives = 158/162 (97%)
 Frame = -2

Query: 486 SPTSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSR 307
           S  SPWYGPDRVKYLGPFSGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSR
Sbjct: 46  SSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSR 105

Query: 306 WAMLGALGCVFPELLSRNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWAT 127
           WAMLGALGCVFPELL+RNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWAT
Sbjct: 106 WAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWAT 165

Query: 126 QVILMGAVEGYRVAGGPLGEVVDPLYPGGSFDPLGLADDPEA 1
           QVILMGAVEGYR+AGGPLGEV DP+YPGGSFDPLGLADDPEA
Sbjct: 166 QVILMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPEA 207



 Score = 54.7 bits (130), Expect(2) = 9e-98
 Identities = 26/32 (81%), Positives = 32/32 (100%)
 Frame = -3

Query: 611 MAASTMALSSPSLAGKSLRLAPSTSELLGEGR 516
           MAASTMALSSPSLAG++++LAPS+S+LLGEGR
Sbjct: 1   MAASTMALSSPSLAGQAIKLAPSSSDLLGEGR 32


>gb|ABD38707.1| chloroplast chlorophyll a/b binding protein [Pachysandra
           terminalis]
          Length = 267

 Score =  328 bits (840), Expect(2) = 6e-97
 Identities = 153/162 (94%), Positives = 158/162 (97%)
 Frame = -2

Query: 486 SPTSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSR 307
           S  SPWYGPDRVKYLGPFSGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH R
Sbjct: 46  SSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCR 105

Query: 306 WAMLGALGCVFPELLSRNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWAT 127
           WAMLGALGCVFPELL+RNGVKFGEAVWFKAGAQIFSEGGLDYLGNP+LVHAQSILAIWAT
Sbjct: 106 WAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAT 165

Query: 126 QVILMGAVEGYRVAGGPLGEVVDPLYPGGSFDPLGLADDPEA 1
           QV+LMGAVEGYR+AGGPLGEV+DPLYPGGSFDPLGLADDPEA
Sbjct: 166 QVLLMGAVEGYRIAGGPLGEVIDPLYPGGSFDPLGLADDPEA 207



 Score = 53.9 bits (128), Expect(2) = 6e-97
 Identities = 29/48 (60%), Positives = 35/48 (72%)
 Frame = -3

Query: 611 MAASTMALSSPSLAGKSLRLAPSTSELLGEGRESHHAKNCRQVQLAHG 468
           MA+STMALSSPSLAGK+++LAPS SELLG GR S      R   ++ G
Sbjct: 1   MASSTMALSSPSLAGKAVKLAPSASELLGVGRVSMRKTGGRPKPVSSG 48


>ref|XP_002306927.1| light-harvesting complex II protein Lhcb1 [Populus trichocarpa]
           gi|118487931|gb|ABK95787.1| unknown [Populus
           trichocarpa] gi|118489514|gb|ABK96559.1| unknown
           [Populus trichocarpa x Populus deltoides]
           gi|118489848|gb|ABK96723.1| unknown [Populus trichocarpa
           x Populus deltoides] gi|118489863|gb|ABK96730.1| unknown
           [Populus trichocarpa x Populus deltoides]
           gi|222856376|gb|EEE93923.1| light-harvesting complex II
           protein Lhcb1 [Populus trichocarpa]
          Length = 264

 Score =  330 bits (845), Expect(2) = 1e-96
 Identities = 153/159 (96%), Positives = 157/159 (98%)
 Frame = -2

Query: 477 SPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAM 298
           SPWYGPDRVKYLGPFSGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAM
Sbjct: 46  SPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAM 105

Query: 297 LGALGCVFPELLSRNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWATQVI 118
           LGALGCVFPELLSRNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSL+HAQSILAIWATQV+
Sbjct: 106 LGALGCVFPELLSRNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWATQVV 165

Query: 117 LMGAVEGYRVAGGPLGEVVDPLYPGGSFDPLGLADDPEA 1
           LMGAVEGYR+AGGPLGEV DP+YPGGSFDPLGLADDPEA
Sbjct: 166 LMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPEA 204



 Score = 50.8 bits (120), Expect(2) = 1e-96
 Identities = 24/34 (70%), Positives = 31/34 (91%)
 Frame = -3

Query: 611 MAASTMALSSPSLAGKSLRLAPSTSELLGEGRES 510
           MAA+TMALSSPSLAGK+++L PS+SE++G GR S
Sbjct: 1   MAAATMALSSPSLAGKAVKLNPSSSEIMGNGRVS 34


>ref|XP_002307725.1| light-harvesting complex II protein Lhcb1 [Populus trichocarpa]
           gi|118485884|gb|ABK94788.1| unknown [Populus
           trichocarpa] gi|222857174|gb|EEE94721.1|
           light-harvesting complex II protein Lhcb1 [Populus
           trichocarpa]
          Length = 264

 Score =  330 bits (845), Expect(2) = 1e-96
 Identities = 153/159 (96%), Positives = 157/159 (98%)
 Frame = -2

Query: 477 SPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAM 298
           SPWYGPDRVKYLGPFSGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAM
Sbjct: 46  SPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAM 105

Query: 297 LGALGCVFPELLSRNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWATQVI 118
           LGALGCVFPELLSRNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSL+HAQSILAIWATQV+
Sbjct: 106 LGALGCVFPELLSRNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWATQVV 165

Query: 117 LMGAVEGYRVAGGPLGEVVDPLYPGGSFDPLGLADDPEA 1
           LMGAVEGYR+AGGPLGEV DP+YPGGSFDPLGLADDPEA
Sbjct: 166 LMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPEA 204



 Score = 50.8 bits (120), Expect(2) = 1e-96
 Identities = 24/34 (70%), Positives = 31/34 (91%)
 Frame = -3

Query: 611 MAASTMALSSPSLAGKSLRLAPSTSELLGEGRES 510
           MAA+TMALSSPSLAGK+++L PS+SE++G GR S
Sbjct: 1   MAAATMALSSPSLAGKAVKLNPSSSEIMGNGRVS 34


>gb|AAA50310.1| light-harvesting chlorophyll a/b-binding protein [Prunus persica]
          Length = 267

 Score =  331 bits (848), Expect(3) = 1e-96
 Identities = 156/162 (96%), Positives = 159/162 (98%)
 Frame = -2

Query: 486 SPTSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSR 307
           S  SPWYGPDRVKYLGPFSGE+PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSR
Sbjct: 46  SSGSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSR 105

Query: 306 WAMLGALGCVFPELLSRNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWAT 127
           WAMLGALGCVFPELLSRNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWAT
Sbjct: 106 WAMLGALGCVFPELLSRNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWAT 165

Query: 126 QVILMGAVEGYRVAGGPLGEVVDPLYPGGSFDPLGLADDPEA 1
           QVILMGAVEGYRVAGGPLGE+ DPLYPGGSFDPLGLA+DPEA
Sbjct: 166 QVILMGAVEGYRVAGGPLGEITDPLYPGGSFDPLGLAEDPEA 207



 Score = 45.4 bits (106), Expect(3) = 1e-96
 Identities = 21/32 (65%), Positives = 28/32 (87%)
 Frame = -3

Query: 611 MAASTMALSSPSLAGKSLRLAPSTSELLGEGR 516
           MA+STMALSSPSLAG++++L  S S ++GEGR
Sbjct: 1   MASSTMALSSPSLAGQAVKLGSSVSNIVGEGR 32



 Score = 25.8 bits (55), Expect(3) = 1e-96
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = -1

Query: 535 SSLVKGGRVTMRKTVGKS 482
           S++V  GR+TMRKT  KS
Sbjct: 25  SNIVGEGRITMRKTASKS 42