BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00017414
         (283 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002277337.2| PREDICTED: pentatricopeptide repeat-containi...   118   6e-25
emb|CBI21441.3| unnamed protein product [Vitis vinifera]              116   2e-24
ref|XP_002523554.1| pentatricopeptide repeat-containing protein,...   106   2e-21
ref|XP_003551036.1| PREDICTED: pentatricopeptide repeat-containi...    84   2e-14
ref|XP_003520055.1| PREDICTED: pentatricopeptide repeat-containi...    76   3e-12

>ref|XP_002277337.2| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39350-like [Vitis vinifera]
          Length = 634

 Score =  118 bits (295), Expect = 6e-25
 Identities = 56/94 (59%), Positives = 71/94 (75%)
 Frame = +2

Query: 2   DMVSALALFDKMHEPNVFVWTAIIGYYSRKGMYKECLRIYDDMQIKGVEPDRYIFPKVLR 181
           D+ SA ALFDK+ +PNVF WTAI+G+YSR G+  EC+R Y +M++KGV PD+Y+FPKV R
Sbjct: 73  DLGSAQALFDKLSQPNVFAWTAILGFYSRNGLSDECVRTYSEMKLKGVLPDKYVFPKVFR 132

Query: 182 ACTQALSLKDGIRVHNDVIRFGGGNIPQVCNSLI 283
           AC Q L L+ GI+VH DV+  G     QVCNSLI
Sbjct: 133 ACGQLLWLEVGIQVHKDVVICGCEFDLQVCNSLI 166


>emb|CBI21441.3| unnamed protein product [Vitis vinifera]
          Length = 832

 Score =  116 bits (290), Expect = 2e-24
 Identities = 55/91 (60%), Positives = 69/91 (75%)
 Frame = +2

Query: 11  SALALFDKMHEPNVFVWTAIIGYYSRKGMYKECLRIYDDMQIKGVEPDRYIFPKVLRACT 190
           SA ALFDK+ +PNVF WTAI+G+YSR G+  EC+R Y +M++KGV PD+Y+FPKV RAC 
Sbjct: 415 SAQALFDKLSQPNVFAWTAILGFYSRNGLSDECVRTYSEMKLKGVLPDKYVFPKVFRACG 474

Query: 191 QALSLKDGIRVHNDVIRFGGGNIPQVCNSLI 283
           Q L L+ GI+VH DV+  G     QVCNSLI
Sbjct: 475 QLLWLEVGIQVHKDVVICGCEFDLQVCNSLI 505


>ref|XP_002523554.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223537116|gb|EEF38749.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 611

 Score =  106 bits (264), Expect = 2e-21
 Identities = 52/93 (55%), Positives = 64/93 (68%)
 Frame = +2

Query: 5   MVSALALFDKMHEPNVFVWTAIIGYYSRKGMYKECLRIYDDMQIKGVEPDRYIFPKVLRA 184
           + SA  LFDKM +PNV+ WTAI G+Y R GMY +C++ Y  M+   V PD Y+FPKVLRA
Sbjct: 46  LFSAQRLFDKMPQPNVYAWTAIFGFYLRHGMYDKCVQNYGFMKYSDVLPDNYVFPKVLRA 105

Query: 185 CTQALSLKDGIRVHNDVIRFGGGNIPQVCNSLI 283
           CTQ L  + GI +H DVI  G  +  QVCNSLI
Sbjct: 106 CTQLLWFEGGIWIHKDVIVCGCESNLQVCNSLI 138


>ref|XP_003551036.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39350-like [Glycine max]
          Length = 619

 Score = 83.6 bits (205), Expect = 2e-14
 Identities = 39/94 (41%), Positives = 61/94 (64%)
 Frame = +2

Query: 2   DMVSALALFDKMHEPNVFVWTAIIGYYSRKGMYKECLRIYDDMQIKGVEPDRYIFPKVLR 181
           D+ SA+ L  ++  PNVF +T+I+ ++SR G+  +C++ Y +++  GV PD Y+FPKVL+
Sbjct: 52  DLRSAVTLLHQISHPNVFAFTSILSFHSRHGLGHQCIQTYAELRRNGVVPDGYVFPKVLK 111

Query: 182 ACTQALSLKDGIRVHNDVIRFGGGNIPQVCNSLI 283
           AC Q      G  VH DV+ FG  +  QV NS++
Sbjct: 112 ACAQLSRFGSGRGVHKDVVVFGEESNLQVRNSVL 145


>ref|XP_003520055.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Glycine max]
          Length = 852

 Score = 75.9 bits (185), Expect = 3e-12
 Identities = 36/94 (38%), Positives = 60/94 (63%)
 Frame = +2

Query: 2   DMVSALALFDKMHEPNVFVWTAIIGYYSRKGMYKECLRIYDDMQIKGVEPDRYIFPKVLR 181
           D+  A A+F+KM E +V  WT+++  Y++ G ++E L+ + DM+I GV PD++I   +L 
Sbjct: 464 DLNCAYAVFEKMFEKDVISWTSLVTGYTQNGSHEESLKTFCDMRISGVSPDQFIVASILS 523

Query: 182 ACTQALSLKDGIRVHNDVIRFGGGNIPQVCNSLI 283
           AC +   L+ G +VH+D I+ G  +   V NSL+
Sbjct: 524 ACAELTLLEFGKQVHSDFIKLGLRSSLSVNNSLV 557