BLASTX nr result

ID: Coptis21_contig00017375 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00017375
         (687 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002334007.1| predicted protein [Populus trichocarpa] gi|2...    80   5e-13
ref|XP_002276854.2| PREDICTED: uncharacterized protein LOC100264...    75   1e-11
ref|XP_002269710.1| PREDICTED: classical arabinogalactan protein...    75   1e-11
gb|ABK92873.1| unknown [Populus trichocarpa]                           75   1e-11
ref|XP_002314400.1| predicted protein [Populus trichocarpa] gi|2...    71   2e-10

>ref|XP_002334007.1| predicted protein [Populus trichocarpa]
           gi|224132428|ref|XP_002321337.1| predicted protein
           [Populus trichocarpa] gi|222839526|gb|EEE77863.1|
           predicted protein [Populus trichocarpa]
           gi|222862110|gb|EEE99652.1| predicted protein [Populus
           trichocarpa]
          Length = 141

 Score = 79.7 bits (195), Expect = 5e-13
 Identities = 50/111 (45%), Positives = 67/111 (60%), Gaps = 2/111 (1%)
 Frame = -3

Query: 625 LSSFMAYFLSLFIVLMAFTISPSLSLSTDVELVTSTISAAPAFXXXXXXXXXXXXXXXDI 446
           ++SF + FL++F V MA+  SP+L+    V+   STISAAPAF                I
Sbjct: 1   MASFCSIFLAMFTVFMAYFSSPALTSQIHVQF--STISAAPAFLHDAPSFSPPTLSPD-I 57

Query: 445 TPLFPTPK-GGISPSPSGMPTIPSSLSPPNPDEMVSYGP-DSALPPSALKP 299
            PLFPTP  G  SP+ S +PTIPS+ SPPNPD+M++ GP  S++ PS   P
Sbjct: 58  EPLFPTPGVGAPSPTESSIPTIPSNPSPPNPDDMLAPGPAGSSISPSGSLP 108


>ref|XP_002276854.2| PREDICTED: uncharacterized protein LOC100264897 [Vitis vinifera]
          Length = 119

 Score = 75.1 bits (183), Expect = 1e-11
 Identities = 46/93 (49%), Positives = 59/93 (63%), Gaps = 3/93 (3%)
 Frame = -3

Query: 568 ISPSLSLSTD-VELVTSTISAAPAFXXXXXXXXXXXXXXXDITPLFPTPKGGISPSPSG- 395
           +SP LSLS + + L TSTIS +PA                 I+PLFP+P GG+ P P+G 
Sbjct: 2   LSPLLSLSPEQLHLQTSTISTSPAVLLNPALSPLPPLSPD-ISPLFPSP-GGVLPVPTGS 59

Query: 394 -MPTIPSSLSPPNPDEMVSYGPDSALPPSALKP 299
            MPTIPS+ SPPNPD++V+ GPD A+ PSA  P
Sbjct: 60  SMPTIPSNPSPPNPDDVVALGPDFAISPSASLP 92


>ref|XP_002269710.1| PREDICTED: classical arabinogalactan protein 26-like [Vitis
           vinifera]
          Length = 138

 Score = 75.1 bits (183), Expect = 1e-11
 Identities = 47/103 (45%), Positives = 60/103 (58%), Gaps = 2/103 (1%)
 Frame = -3

Query: 613 MAYFLSLFIVLMAF-TISPSLSLSTDVELVTSTISAAPAFXXXXXXXXXXXXXXXDITPL 437
           MA   SL  V M F TI  S++    ++L TSTISA+PA+               DITPL
Sbjct: 1   MAAIWSLIAVFMVFITIHSSVAFPYQLKLQTSTISASPAYLPNPPLSSPSPSLSPDITPL 60

Query: 436 FPTPKG-GISPSPSGMPTIPSSLSPPNPDEMVSYGPDSALPPS 311
           FP+P G  +SP+ S +PTIPSS SPPNPD + +  P SA  P+
Sbjct: 61  FPSPVGVPLSPAESSLPTIPSSPSPPNPDAVATPVPGSASSPA 103


>gb|ABK92873.1| unknown [Populus trichocarpa]
          Length = 141

 Score = 75.1 bits (183), Expect = 1e-11
 Identities = 49/111 (44%), Positives = 66/111 (59%), Gaps = 2/111 (1%)
 Frame = -3

Query: 625 LSSFMAYFLSLFIVLMAFTISPSLSLSTDVELVTSTISAAPAFXXXXXXXXXXXXXXXDI 446
           ++S  + FL++F VLMA+  SP+L+    V+   STISAAPAF                I
Sbjct: 1   MASCCSMFLAMFTVLMAYFSSPALTSQIHVQF--STISAAPAFLHDAPSFSPPTLSPD-I 57

Query: 445 TPLFPTPK-GGISPSPSGMPTIPSSLSPPNPDEMVSYGP-DSALPPSALKP 299
            PLFPTP  G  SP+ S + TIPS+ SPPNPD+M++ GP  S++ PS   P
Sbjct: 58  EPLFPTPGVGAPSPTESSITTIPSNPSPPNPDDMLAPGPAGSSISPSGSLP 108


>ref|XP_002314400.1| predicted protein [Populus trichocarpa] gi|222863440|gb|EEF00571.1|
           predicted protein [Populus trichocarpa]
          Length = 132

 Score = 71.2 bits (173), Expect = 2e-10
 Identities = 46/111 (41%), Positives = 59/111 (53%), Gaps = 4/111 (3%)
 Frame = -3

Query: 613 MAYFLSLFIVLMAFTISPSLSLSTDVELVTST--ISAAPAFXXXXXXXXXXXXXXXDITP 440
           MA F    ++++   I P LS ST +   TS   IS +P F               DI P
Sbjct: 1   MASFCFFIVLIVPLMIFPLLSSSTQLNSKTSPYPISTSPPFLTNPPPPSPLQELSPDIAP 60

Query: 439 LFPTPKGGISPSP--SGMPTIPSSLSPPNPDEMVSYGPDSALPPSALKPVA 293
           L P+P GG+ PSP  S +PTIPS+ SPPNPDE+V+ GP SA  P    P +
Sbjct: 61  LLPSP-GGVLPSPTVSSVPTIPSTPSPPNPDEVVAPGPASAFSPLGALPAS 110


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