BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00017372
         (576 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004156247.1| PREDICTED: pentatricopeptide repeat-containi...   232   3e-59
ref|XP_004141633.1| PREDICTED: pentatricopeptide repeat-containi...   232   3e-59
ref|XP_003534476.1| PREDICTED: pentatricopeptide repeat-containi...   230   1e-58
ref|XP_003604235.1| Pentatricopeptide repeat-containing protein ...   229   3e-58
ref|XP_002275897.1| PREDICTED: pentatricopeptide repeat-containi...   228   6e-58

>ref|XP_004156247.1| PREDICTED: pentatricopeptide repeat-containing protein At1g71460,
           chloroplastic-like [Cucumis sativus]
          Length = 716

 Score =  232 bits (592), Expect = 3e-59
 Identities = 116/190 (61%), Positives = 146/190 (76%), Gaps = 1/190 (0%)
 Frame = +1

Query: 10  KIQTKPPPNSKRPIFIKKKHTSKFPS-KTQKFSQKDAFPHSLPLHKKNPSSIYKDIQNFA 186
           K  T  PP+       K K  SKF + K   F++KDAFP SLPLH KNP +IY+D+Q FA
Sbjct: 38  KSTTDTPPS-------KIKIVSKFRNRKRPTFAEKDAFPSSLPLHTKNPHAIYEDVQRFA 90

Query: 187 RENKLKEALTILDYLEKEGIPVNTTTFSSLLNACVRTKSLGYGKQVHTHIRINGLDNNEF 366
           R+NKLKEALTI+DY++++GIPVN TTFSSL+ ACVRTKS+ Y KQ+H HIRINGL+NNEF
Sbjct: 91  RQNKLKEALTIMDYVDQQGIPVNATTFSSLITACVRTKSMTYAKQIHAHIRINGLENNEF 150

Query: 367 LRTRLVHMYSSCGSMEDAEKVFDELSTRSSCVSVYPWNALLRGNVVRGGWRYGDVLDTYS 546
           +RTRLVHMY++CGS+E+A+K+FDE    SS  SVYPWNALLRG V+ G   Y  +L TY+
Sbjct: 151 IRTRLVHMYTACGSLEEAQKLFDE----SSSKSVYPWNALLRGTVMAGRRDYRSILSTYA 206

Query: 547 KMREMGVGMN 576
           +MR +GV +N
Sbjct: 207 EMRRLGVELN 216


>ref|XP_004141633.1| PREDICTED: pentatricopeptide repeat-containing protein At1g71460,
           chloroplastic-like [Cucumis sativus]
          Length = 696

 Score =  232 bits (592), Expect = 3e-59
 Identities = 116/190 (61%), Positives = 146/190 (76%), Gaps = 1/190 (0%)
 Frame = +1

Query: 10  KIQTKPPPNSKRPIFIKKKHTSKFPS-KTQKFSQKDAFPHSLPLHKKNPSSIYKDIQNFA 186
           K  T  PP+       K K  SKF + K   F++KDAFP SLPLH KNP +IY+D+Q FA
Sbjct: 38  KSTTDTPPS-------KIKIVSKFRNRKRPTFAEKDAFPSSLPLHTKNPHAIYEDVQRFA 90

Query: 187 RENKLKEALTILDYLEKEGIPVNTTTFSSLLNACVRTKSLGYGKQVHTHIRINGLDNNEF 366
           R+NKLKEALTI+DY++++GIPVN TTFSSL+ ACVRTKS+ Y KQ+H HIRINGL+NNEF
Sbjct: 91  RQNKLKEALTIMDYVDQQGIPVNATTFSSLITACVRTKSMTYAKQIHAHIRINGLENNEF 150

Query: 367 LRTRLVHMYSSCGSMEDAEKVFDELSTRSSCVSVYPWNALLRGNVVRGGWRYGDVLDTYS 546
           +RTRLVHMY++CGS+E+A+K+FDE    SS  SVYPWNALLRG V+ G   Y  +L TY+
Sbjct: 151 IRTRLVHMYTACGSLEEAQKLFDE----SSSKSVYPWNALLRGTVMAGRRDYRSILSTYA 206

Query: 547 KMREMGVGMN 576
           +MR +GV +N
Sbjct: 207 EMRRLGVELN 216


>ref|XP_003534476.1| PREDICTED: pentatricopeptide repeat-containing protein At1g71460,
           chloroplastic-like [Glycine max]
          Length = 682

 Score =  230 bits (586), Expect = 1e-58
 Identities = 116/192 (60%), Positives = 145/192 (75%)
 Frame = +1

Query: 1   PSSKIQTKPPPNSKRPIFIKKKHTSKFPSKTQKFSQKDAFPHSLPLHKKNPSSIYKDIQN 180
           P SK     PP    P    +KH +K P   + F++KDAFP SLPLH KNP  I+KDI+ 
Sbjct: 35  PPSKTHHTKPPRFTTP----RKHRTKKP---KPFTEKDAFPSSLPLHNKNPIFIFKDIKR 87

Query: 181 FARENKLKEALTILDYLEKEGIPVNTTTFSSLLNACVRTKSLGYGKQVHTHIRINGLDNN 360
           FAR+NKLKEALTILDY+++ GIPV+ TTFSS++ AC+R KSL  G++VHTHIRINGL+NN
Sbjct: 88  FARQNKLKEALTILDYVDQRGIPVDATTFSSVVAACIRAKSLPQGREVHTHIRINGLENN 147

Query: 361 EFLRTRLVHMYSSCGSMEDAEKVFDELSTRSSCVSVYPWNALLRGNVVRGGWRYGDVLDT 540
            FLRT+LVHMY++CGS+EDA+K+FD L     C SVYPWNALLRG VV G  +Y DVL T
Sbjct: 148 SFLRTKLVHMYTACGSLEDAQKLFDGL----PCESVYPWNALLRGTVVSGKRQYIDVLKT 203

Query: 541 YSKMREMGVGMN 576
           Y++MR +GV +N
Sbjct: 204 YTEMRALGVELN 215



 Score = 59.7 bits (143), Expect = 3e-07
 Identities = 30/113 (26%), Positives = 60/113 (53%)
 Frame = +1

Query: 172 IQNFARENKLKEALTILDYLEKEGIPVNTTTFSSLLNACVRTKSLGYGKQVHTHIRINGL 351
           +  +A   KL++AL    ++++EG   +  T +++L  C + ++L  GKQ+H +   +  
Sbjct: 391 MSGYAANGKLEQALRSTIWMQQEGFRPDVVTLATVLPVCAQLRALEQGKQIHAYALKHWF 450

Query: 352 DNNEFLRTRLVHMYSSCGSMEDAEKVFDELSTRSSCVSVYPWNALLRGNVVRG 510
             N  + + L+ MYS CG +E + ++FD +  R    +V  W A++   +  G
Sbjct: 451 LPNVSVASSLMTMYSKCGVVEYSRRLFDNMEQR----NVISWTAMIDSYIENG 499


>ref|XP_003604235.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355505290|gb|AES86432.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 688

 Score =  229 bits (584), Expect = 3e-58
 Identities = 122/195 (62%), Positives = 147/195 (75%), Gaps = 3/195 (1%)
 Frame = +1

Query: 1   PSSKIQTKPPPNSKRPIF-IKKKHTSKFPSKTQKFSQKDAFPHSLPLHKKNPSSIYKDIQ 177
           PSS  +T      K+P F I  K+ +K  +  + FS++DAFP SLPLH KNP SIYKDI+
Sbjct: 27  PSSSFKTTH--QRKKPKFTIPNKNNNKNNNVKKPFSEEDAFPCSLPLHNKNPISIYKDIK 84

Query: 178 NFARENKLKEALTILDYLEKEGIPVNTTTFSSLLNACVRTKSLGYGKQVHTHIRINGLDN 357
           NFAR+NKL EAL ILDY+++ GIPVN TTFSSL+ AC+RT SL  GKQ+HTHIRINGL+ 
Sbjct: 85  NFARQNKLNEALAILDYVDQNGIPVNATTFSSLIAACIRTNSLSIGKQIHTHIRINGLEK 144

Query: 358 NEFLRTRLVHMYSSCGSMEDAEKVFDELSTRSSCVSVYPWNALLRGNVVRGGWR--YGDV 531
           N FL T+LV MY+SCGS+EDA K+FDEL   S   SVYPWNALLRG VV GG +  Y DV
Sbjct: 145 NTFLLTKLVQMYTSCGSLEDALKLFDELPDES---SVYPWNALLRGTVVFGGRKKQYIDV 201

Query: 532 LDTYSKMREMGVGMN 576
           + TYSKMRE+GV +N
Sbjct: 202 VKTYSKMRELGVELN 216



 Score = 57.8 bits (138), Expect = 1e-06
 Identities = 30/113 (26%), Positives = 61/113 (53%)
 Frame = +1

Query: 172 IQNFARENKLKEALTILDYLEKEGIPVNTTTFSSLLNACVRTKSLGYGKQVHTHIRINGL 351
           +  +A   +L++AL  + ++++EG   +  T +++L  C + ++L  GKQ+H +   +  
Sbjct: 394 MSGYASVGRLEQALRAVIWMQQEGFRPDVVTVATVLPICAQLRALEQGKQIHAYALKHWF 453

Query: 352 DNNEFLRTRLVHMYSSCGSMEDAEKVFDELSTRSSCVSVYPWNALLRGNVVRG 510
             N  L + LV MYS CG +E + ++F ++  R    +V  W A++   +  G
Sbjct: 454 LPNVSLSSSLVVMYSKCGVVEYSTRLFGDMEQR----NVISWTAMIDSYIENG 502


>ref|XP_002275897.1| PREDICTED: pentatricopeptide repeat-containing protein At1g71460,
           chloroplastic-like [Vitis vinifera]
          Length = 725

 Score =  228 bits (581), Expect = 6e-58
 Identities = 118/196 (60%), Positives = 144/196 (73%), Gaps = 13/196 (6%)
 Frame = +1

Query: 28  PPNSKRP--IFIKKKHTSKFPSKTQ-----------KFSQKDAFPHSLPLHKKNPSSIYK 168
           P  SK P  I+   + T   P++TQ            FS+KDAFP SLPLH KNP +I+ 
Sbjct: 62  PLQSKNPHAIYSDNQTTPSRPTQTQFRTRLKSPKKKPFSEKDAFPMSLPLHTKNPHAIFS 121

Query: 169 DIQNFARENKLKEALTILDYLEKEGIPVNTTTFSSLLNACVRTKSLGYGKQVHTHIRING 348
           DIQ FAR+ KLKEALTILDY +++GIPVN TTFSSLL ACV +KSL +GKQ+H HIRING
Sbjct: 122 DIQRFARQGKLKEALTILDYCDQQGIPVNPTTFSSLLRACVESKSLTHGKQIHVHIRING 181

Query: 349 LDNNEFLRTRLVHMYSSCGSMEDAEKVFDELSTRSSCVSVYPWNALLRGNVVRGGWRYGD 528
           L+NNEFLRT+LVHMY+SCGS+EDA  VFD +S++    SVY WNALLRGNV+ G   Y +
Sbjct: 182 LENNEFLRTKLVHMYTSCGSLEDARGVFDGVSSK----SVYTWNALLRGNVISGRRHYRE 237

Query: 529 VLDTYSKMREMGVGMN 576
            L TYS+MRE+GV +N
Sbjct: 238 ALSTYSEMRELGVELN 253



 Score = 62.8 bits (151), Expect = 4e-08
 Identities = 31/113 (27%), Positives = 61/113 (53%)
 Frame = +1

Query: 172 IQNFARENKLKEALTILDYLEKEGIPVNTTTFSSLLNACVRTKSLGYGKQVHTHIRINGL 351
           +  +    +L +AL  + ++++EG   +  T +++L  C   ++L  GK++H++   NG 
Sbjct: 429 MSGYVSNGRLDQALRSIAWMQQEGFRPDVVTVATVLPVCAELRALRQGKEIHSYAVKNGF 488

Query: 352 DNNEFLRTRLVHMYSSCGSMEDAEKVFDELSTRSSCVSVYPWNALLRGNVVRG 510
             N  + T L+ MYS CG+++ + K+FD +  R    +V  W A++   V  G
Sbjct: 489 LPNVSIATSLMVMYSKCGNLDYSFKLFDGMDAR----NVISWTAMIDSYVENG 537