BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00017329
         (402 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002269867.1| PREDICTED: pentatricopeptide repeat-containi...   150   8e-35
ref|XP_004140069.1| PREDICTED: pentatricopeptide repeat-containi...   136   2e-30
ref|XP_002320514.1| predicted protein [Populus trichocarpa] gi|2...   129   2e-28
ref|XP_002869597.1| pentatricopeptide repeat-containing protein ...   127   9e-28
ref|XP_003625044.1| Pentatricopeptide repeat-containing protein ...   127   1e-27

>ref|XP_002269867.1| PREDICTED: pentatricopeptide repeat-containing protein At4g26680,
           mitochondrial-like [Vitis vinifera]
          Length = 616

 Score =  150 bits (380), Expect = 8e-35
 Identities = 65/102 (63%), Positives = 86/102 (84%)
 Frame = +2

Query: 95  FMKNWNPLPVPHRTIPDPKGADLDFINIAHSHLLHTEWTNLNLISTHLTTFRVKHILLKV 274
           +M++WNP+PVPHRTIP+P+G DLDF+N+AHSHL++++W  LN +ST LT +R+KHI+LK+
Sbjct: 108 YMRSWNPIPVPHRTIPEPRGQDLDFVNVAHSHLINSDWAKLNSMSTGLTPYRMKHIMLKI 167

Query: 275 QNDPVLSYEFFNWVEQKPNNLHTLETVSIILHILTKAKKFKS 400
           + D VLS+EFFNWV+ +  N  TLET SIILHILTK  KFKS
Sbjct: 168 KKDHVLSFEFFNWVKAQNPNCQTLETYSIILHILTKNHKFKS 209


>ref|XP_004140069.1| PREDICTED: pentatricopeptide repeat-containing protein At4g26680,
           mitochondrial-like [Cucumis sativus]
           gi|449528063|ref|XP_004171026.1| PREDICTED:
           pentatricopeptide repeat-containing protein At4g26680,
           mitochondrial-like [Cucumis sativus]
          Length = 536

 Score =  136 bits (342), Expect = 2e-30
 Identities = 61/100 (61%), Positives = 79/100 (79%)
 Frame = +2

Query: 101 KNWNPLPVPHRTIPDPKGADLDFINIAHSHLLHTEWTNLNLISTHLTTFRVKHILLKVQN 280
           +N + +P+PHR+IP+P+G DLDF+N+ HSHL+H++W+ L+ +S  LT FRVKHILLK Q 
Sbjct: 34  RNRDSIPIPHRSIPEPRGPDLDFVNVVHSHLIHSDWSKLDCLSMGLTAFRVKHILLKTQK 93

Query: 281 DPVLSYEFFNWVEQKPNNLHTLETVSIILHILTKAKKFKS 400
           D VLS EFFNWV  +  + HTLET  IILHILTK +KFKS
Sbjct: 94  DYVLSLEFFNWVATQNPSSHTLETHCIILHILTKRRKFKS 133


>ref|XP_002320514.1| predicted protein [Populus trichocarpa] gi|222861287|gb|EEE98829.1|
           predicted protein [Populus trichocarpa]
          Length = 478

 Score =  129 bits (324), Expect = 2e-28
 Identities = 61/94 (64%), Positives = 72/94 (76%)
 Frame = +2

Query: 119 PVPHRTIPDPKGADLDFINIAHSHLLHTEWTNLNLISTHLTTFRVKHILLKVQNDPVLSY 298
           P+PHRTIP+PKG DLDF+N+ HSHL+H++W  LN +STH T FRV HILLK+Q D VLS 
Sbjct: 1   PIPHRTIPEPKGQDLDFVNVVHSHLIHSDWDKLNKLSTHFTPFRVNHILLKIQKDHVLSL 60

Query: 299 EFFNWVEQKPNNLHTLETVSIILHILTKAKKFKS 400
           EFFN ++       TLET SIILHILTK  KFKS
Sbjct: 61  EFFNSLKTLNPISLTLETHSIILHILTKKSKFKS 94


>ref|XP_002869597.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata] gi|297315433|gb|EFH45856.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 538

 Score =  127 bits (319), Expect = 9e-28
 Identities = 54/95 (56%), Positives = 76/95 (80%)
 Frame = +2

Query: 116 LPVPHRTIPDPKGADLDFINIAHSHLLHTEWTNLNLISTHLTTFRVKHILLKVQNDPVLS 295
           +P+PHR+ P+PKG DLDF+N+AHSHL+ ++W  LN +S HL +FRVK++LLK+Q D +LS
Sbjct: 39  IPIPHRSNPEPKGQDLDFVNVAHSHLIQSDWDKLNKLSDHLDSFRVKNVLLKIQKDYLLS 98

Query: 296 YEFFNWVEQKPNNLHTLETVSIILHILTKAKKFKS 400
           +EFFNW + +    H+LET +I+LH LTK +KFKS
Sbjct: 99  FEFFNWAKTRNPASHSLETHAIVLHTLTKNRKFKS 133


>ref|XP_003625044.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355500059|gb|AES81262.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 521

 Score =  127 bits (318), Expect = 1e-27
 Identities = 57/95 (60%), Positives = 71/95 (74%)
 Frame = +2

Query: 116 LPVPHRTIPDPKGADLDFINIAHSHLLHTEWTNLNLISTHLTTFRVKHILLKVQNDPVLS 295
           LP+PHRT+P PKG DLDFINI HSH +H++W  L   S  LT F+++HILLK+QND VLS
Sbjct: 26  LPIPHRTLPQPKGQDLDFINIFHSHFIHSQWEKLTPFSKTLTPFKIQHILLKLQNDAVLS 85

Query: 296 YEFFNWVEQKPNNLHTLETVSIILHILTKAKKFKS 400
            +FFNWV+    N HTL T S +LHILTK + FK+
Sbjct: 86  LKFFNWVQTHNPNSHTLHTHSFLLHILTKNRNFKT 120