BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00017312
         (690 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAN75888.1| hypothetical protein VITISV_023640 [Vitis vinifera]   119   6e-25
ref|XP_002267393.1| PREDICTED: mismatch repair endonuclease PMS2...   108   1e-21
ref|XP_002321013.1| predicted protein [Populus trichocarpa] gi|2...    91   2e-16
ref|XP_002523056.1| DNA mismatch repair protein pms2, putative [...    78   1e-12
dbj|BAC42424.1| putative DNA mismatch repair protein PMS1 [Arabi...    74   3e-11

>emb|CAN75888.1| hypothetical protein VITISV_023640 [Vitis vinifera]
          Length = 3804

 Score =  119 bits (298), Expect = 6e-25
 Identities = 78/193 (40%), Positives = 106/193 (54%), Gaps = 2/193 (1%)
 Frame = -3

Query: 574  LTKFVSVNKRKHENSCTVLSEVPILRNEASRCQMRKNGLGMHAEVSESVADHNLVNTSSA 395
            L+KFV+VNKRKHEN  TVLSE P+LRN+   CQ++KN   MHA VS S  +H   N S+ 
Sbjct: 3210 LSKFVTVNKRKHENISTVLSEAPLLRNQTPNCQLKKNNSEMHALVSRSFVNHQKTNDSAG 3269

Query: 394  VNEDETSECHREAHASNKVETLLSSGGKIVNGGYEEEISEHQKK-SLLDVDLTMDALTDK 218
            + E E S+      A +  E    SGG I +    E++  H+      DV  T     +K
Sbjct: 3270 IIESEPSKFLGVDSAFDATENPHYSGGNINDEKAGEDLENHETPLPPADVATTASLSEEK 3329

Query: 217  DPQSIPQVLSIADTSNAVLDAPPVPSSGLDLCSVLQFSMKDLIMSR-QKLLRLRSNGFSN 41
            +   +  V S A     VLD  P+PSS L +CS LQFS ++L   R Q+L RL+S+ +  
Sbjct: 3330 NISDLSXVAS-AVQDTPVLDT-PMPSSDLKICSTLQFSFEELRTRRHQRLSRLQSSSYKC 3387

Query: 40   ESKKINRCFTAAT 2
                  RC++AAT
Sbjct: 3388 GRTTTERCYSAAT 3400


>ref|XP_002267393.1| PREDICTED: mismatch repair endonuclease PMS2-like [Vitis vinifera]
          Length = 937

 Score =  108 bits (269), Expect = 1e-21
 Identities = 78/196 (39%), Positives = 104/196 (53%), Gaps = 5/196 (2%)
 Frame = -3

Query: 574  LTKFVSVNKRKHENSCTVLSEVPILRNEASRCQMRKNGLGMHAEVSESVADHNLVNTSSA 395
            L+KFV+VNKRKHEN  TVLSE P+LRN+   CQ++KN   MHA VS S  +H   N S+ 
Sbjct: 511  LSKFVTVNKRKHENISTVLSEAPLLRNQTPNCQLKKNNSEMHALVSRSFVNHQKTNDSAG 570

Query: 394  VNEDETSECHREAHASNKVETLLSSGGKIVNGGYEEEISEHQKK-SLLDVDLTMDALTDK 218
            + E E S+      A +  E    SGG I +    E++  H+      DV  T     +K
Sbjct: 571  IIESEPSKFLGVDSAFDATENPHYSGGNINDEKAGEDLENHETPLPPADVATTASLSEEK 630

Query: 217  DPQSIPQVLSIADTSNAVLDAPPVPSSGLDLCSVLQFSMKDLIMSR-QKLLRLRSNGFS- 44
            +   +  V S A     VLD  P+PSS L +CS LQFS ++L   R Q+     +  FS 
Sbjct: 631  NISDLSGVAS-AVQDTPVLDT-PMPSSDLKICSTLQFSFEELRTRRHQRCYSAATLEFSQ 688

Query: 43   --NESKKINRCFTAAT 2
              NE +K+ R   AAT
Sbjct: 689  PENEERKV-RALAAAT 703


>ref|XP_002321013.1| predicted protein [Populus trichocarpa] gi|222861786|gb|EEE99328.1|
            predicted protein [Populus trichocarpa]
          Length = 915

 Score = 91.3 bits (225), Expect = 2e-16
 Identities = 66/195 (33%), Positives = 102/195 (52%), Gaps = 4/195 (2%)
 Frame = -3

Query: 574  LTKFVSVNKRKHENSCTVLSEVPILRNEASRCQMRKNGLGMHAEVSESVADHNLVNTSSA 395
            L+ F++VNKRK E+  T LSEVP+LRN+ S CQ++K+ + +H  V+  + +H+ ++ S+ 
Sbjct: 484  LSNFLTVNKRKREDITTQLSEVPVLRNQTSECQLKKSDIDIHDAVTSLLFNHHHIDDSTE 543

Query: 394  VNEDETSECHREAHASNKVETLLSSGGKIVN--GGYEEEISEHQKKSLLDVDLTMDALTD 221
              + E  + H      NK         K+     G +   S     S+      +  L +
Sbjct: 544  FTDAEPPKHHSTDVIINKTRNNSGLQPKLAEDPSGEQNSSSPDDVPSITTPCKGLGNLLE 603

Query: 220  KDPQSIPQVLSIADTSNAVLDAPPVPSSGLDLCSVLQFSMKDLIMSR-QKLLRLRSNGFS 44
              P + P     A +S  +LDA PVP S   +CS LQFS +DL   R Q+L RL+S  F+
Sbjct: 604  DLPVASPP----AQSSIELLDA-PVPFSAQQICSTLQFSFQDLHSRRMQRLSRLQSGKFT 658

Query: 43   -NESKKINRCFTAAT 2
               SK+ +R + AAT
Sbjct: 659  FGGSKRSHRSYAAAT 673


>ref|XP_002523056.1| DNA mismatch repair protein pms2, putative [Ricinus communis]
            gi|223537618|gb|EEF39241.1| DNA mismatch repair protein
            pms2, putative [Ricinus communis]
          Length = 924

 Score = 78.2 bits (191), Expect = 1e-12
 Identities = 59/199 (29%), Positives = 104/199 (52%), Gaps = 8/199 (4%)
 Frame = -3

Query: 574  LTKFVSVNKRKHEN-SCTVLSEVPILRNEASRCQMRKNGLGMHAEVSESVADHNLVNTSS 398
            ++KFV+V+KRKH++ S T LSE+PILRN+  +  + K+   ++A V+ S  +H+ ++ S 
Sbjct: 487  ISKFVTVSKRKHDDISTTTLSEIPILRNQTLQRPLNKSNSEVNAAVTGSPFNHHHIDDSL 546

Query: 397  AVNEDETSECHREAHASNKVETLLSSGGKIVNGGYEEEISEHQKKSLLDVDLTMDALTDK 218
             V++ E S+        +KV    S  G   N G  ++ SE  +K     D+  D    +
Sbjct: 547  EVSDIEVSKFPTAEKIFSKVRNSASYRGH-TNDGKPKDDSEGAEKLSFIADVAPDTSPSR 605

Query: 217  DPQSIPQVLSIA----DTSNAVLDAPPVPSSGLDLCSVLQFSMKDLIMSRQK---LLRLR 59
              +++ + L +      +S+A+LD P    S  ++CS LQF+ ++L   RQ+   +L+  
Sbjct: 606  GLENMSEDLILTAPPLQSSSALLDVP--KPSAHEICSTLQFNFQELKAKRQQRRSILQFS 663

Query: 58   SNGFSNESKKINRCFTAAT 2
                     K +R + AAT
Sbjct: 664  GYASGGMKMKSHRTYAAAT 682


>dbj|BAC42424.1| putative DNA mismatch repair protein PMS1 [Arabidopsis thaliana]
          Length = 733

 Score = 73.9 bits (180), Expect = 3e-11
 Identities = 56/199 (28%), Positives = 104/199 (52%), Gaps = 8/199 (4%)
 Frame = -3

Query: 574  LTKFVSVNKRKHENSCTVLSEVPILRNEASRCQMRKNGLGMHAEVSESVADHNLVNTSSA 395
            L  FV++ KRKHEN  T+LSE P+LRN+ S  ++ K+   + A  S  + + + ++    
Sbjct: 479  LNTFVTMGKRKHENISTILSETPVLRNQTSSYRVEKSKFEVRALASRCLVEGDQLD-DMV 537

Query: 394  VNEDETSECHREAHASNKVETLLSSGGKIVNGGYEEEISEHQKKSLLDVDLTMDALTDKD 215
            +++++ +   R++   N++    S G +  N   E    EH+K    +   + + LT  D
Sbjct: 538  ISKEDMTPSERDSELGNRI----SPGTQADN--VERHEREHEKPIRFEEPTSDNTLTKGD 591

Query: 214  PQSI----PQVLSIADTSNAVLDAPPVPSSGLDLCSVLQFSMKDLIMSR-QKLLRLRSNG 50
             + +    P+      +   VLD+ P  S+G  + S L+FS ++L   R ++L RL+S G
Sbjct: 592  VERVSEDNPRCSQPLRSVATVLDS-PAQSTGPKMFSTLEFSFQNLRTRRLERLSRLQSTG 650

Query: 49   FSNE---SKKINRCFTAAT 2
            + ++   + +  +CF AAT
Sbjct: 651  YVSKCMNTPQPKKCFAAAT 669