BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00017282
         (1188 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002279134.1| PREDICTED: pentatricopeptide repeat-containi...   293   8e-78
emb|CBI26289.3| unnamed protein product [Vitis vinifera]              293   8e-78
ref|XP_002314675.1| predicted protein [Populus trichocarpa] gi|2...   284   8e-75
ref|XP_003538647.1| PREDICTED: pentatricopeptide repeat-containi...   280   3e-74
ref|XP_003610748.1| Pentatricopeptide repeat-containing protein ...   259   1e-67

>ref|XP_002279134.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22690
            [Vitis vinifera]
          Length = 836

 Score =  293 bits (750), Expect(2) = 8e-78
 Identities = 136/201 (67%), Positives = 169/201 (84%)
 Frame = +3

Query: 426  GMLEEAHKFIKCMPTEPNDVVWGALLSACRIHKNVELATYAAKRVTKLAPERTGIHILLS 605
            G+L EA   IK MP EPNDVVWG+LL+ACR+HKNVE+ATYAA+R+ +LAP+R G+H+LLS
Sbjct: 615  GLLREAFDLIKSMPMEPNDVVWGSLLAACRVHKNVEMATYAAERINELAPQRAGVHVLLS 674

Query: 606  NVYASVGKWTDVARVRMQLKEKGWHKPPGSSSIEVNGTINEFIASDESHPQMTHIARMLE 785
            N+YAS GKWTDVARVR+ L+EKG  K PGSSS++VNG I+EF + DESHP+MTHIA ML+
Sbjct: 675  NIYASAGKWTDVARVRLNLREKGVRKVPGSSSVQVNGVIHEFTSGDESHPEMTHIALMLQ 734

Query: 786  EMCCRLKDAGHVPNLSHVLLDINEHEKEHALNRHSEKLTIAFGLISTYHRGQIRVVKNLQ 965
            EM CR  DAGH+P+LS+VLLD++E EKE+ L+RHSEKL IAFGLI+T     IRVVKNL+
Sbjct: 735  EMNCRFSDAGHIPDLSNVLLDVDEQEKEYLLSRHSEKLAIAFGLIATGRSMPIRVVKNLR 794

Query: 966  MCADCHTFAKFVSETYSREIV 1028
            MC+DCH+FAK  S  Y+REI+
Sbjct: 795  MCSDCHSFAKMASIIYNREII 815



 Score = 25.0 bits (53), Expect(2) = 8e-78
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = +1

Query: 1030 GLCSCRDYW 1056
            GLCSC DYW
Sbjct: 828  GLCSCCDYW 836


>emb|CBI26289.3| unnamed protein product [Vitis vinifera]
          Length = 668

 Score =  293 bits (750), Expect(2) = 8e-78
 Identities = 136/201 (67%), Positives = 169/201 (84%)
 Frame = +3

Query: 426  GMLEEAHKFIKCMPTEPNDVVWGALLSACRIHKNVELATYAAKRVTKLAPERTGIHILLS 605
            G+L EA   IK MP EPNDVVWG+LL+ACR+HKNVE+ATYAA+R+ +LAP+R G+H+LLS
Sbjct: 447  GLLREAFDLIKSMPMEPNDVVWGSLLAACRVHKNVEMATYAAERINELAPQRAGVHVLLS 506

Query: 606  NVYASVGKWTDVARVRMQLKEKGWHKPPGSSSIEVNGTINEFIASDESHPQMTHIARMLE 785
            N+YAS GKWTDVARVR+ L+EKG  K PGSSS++VNG I+EF + DESHP+MTHIA ML+
Sbjct: 507  NIYASAGKWTDVARVRLNLREKGVRKVPGSSSVQVNGVIHEFTSGDESHPEMTHIALMLQ 566

Query: 786  EMCCRLKDAGHVPNLSHVLLDINEHEKEHALNRHSEKLTIAFGLISTYHRGQIRVVKNLQ 965
            EM CR  DAGH+P+LS+VLLD++E EKE+ L+RHSEKL IAFGLI+T     IRVVKNL+
Sbjct: 567  EMNCRFSDAGHIPDLSNVLLDVDEQEKEYLLSRHSEKLAIAFGLIATGRSMPIRVVKNLR 626

Query: 966  MCADCHTFAKFVSETYSREIV 1028
            MC+DCH+FAK  S  Y+REI+
Sbjct: 627  MCSDCHSFAKMASIIYNREII 647



 Score = 25.0 bits (53), Expect(2) = 8e-78
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = +1

Query: 1030 GLCSCRDYW 1056
            GLCSC DYW
Sbjct: 660  GLCSCCDYW 668


>ref|XP_002314675.1| predicted protein [Populus trichocarpa] gi|222863715|gb|EEF00846.1|
            predicted protein [Populus trichocarpa]
          Length = 845

 Score =  284 bits (727), Expect(2) = 8e-75
 Identities = 132/201 (65%), Positives = 167/201 (83%)
 Frame = +3

Query: 426  GMLEEAHKFIKCMPTEPNDVVWGALLSACRIHKNVELATYAAKRVTKLAPERTGIHILLS 605
            G+L EA   I  M  EPNDV+WG+LL+ACR+HKNV++A YAA+R+++L PERTGIH+LLS
Sbjct: 624  GLLSEALSLINSMQMEPNDVIWGSLLAACRVHKNVDIAAYAAERISELDPERTGIHVLLS 683

Query: 606  NVYASVGKWTDVARVRMQLKEKGWHKPPGSSSIEVNGTINEFIASDESHPQMTHIARMLE 785
            N+YAS G+W DVA+VR+ LKEKG HK PGSSSIE+NG I EF   DESHP+MTHI  ML+
Sbjct: 684  NIYASAGRWDDVAKVRLHLKEKGAHKMPGSSSIEINGKIFEFTTGDESHPEMTHIEPMLK 743

Query: 786  EMCCRLKDAGHVPNLSHVLLDINEHEKEHALNRHSEKLTIAFGLISTYHRGQIRVVKNLQ 965
            E+CCRL+D G+VP+L++VLLD+NE EKE+ L+RHSEKL IAF LIST     IRV KNL+
Sbjct: 744  EICCRLRDIGYVPDLTNVLLDVNEKEKEYLLSRHSEKLAIAFALISTGQGMPIRVAKNLR 803

Query: 966  MCADCHTFAKFVSETYSREIV 1028
            +C+DCH+FAK VS++YSREI+
Sbjct: 804  ICSDCHSFAKLVSKSYSREII 824



 Score = 23.9 bits (50), Expect(2) = 8e-75
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +1

Query: 1030 GLCSCRDYW 1056
            G CSC DYW
Sbjct: 837  GFCSCGDYW 845


>ref|XP_003538647.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22690-like
            [Glycine max]
          Length = 836

 Score =  280 bits (715), Expect(2) = 3e-74
 Identities = 135/200 (67%), Positives = 167/200 (83%)
 Frame = +3

Query: 426  GMLEEAHKFIKCMPTEPNDVVWGALLSACRIHKNVELATYAAKRVTKLAPERTGIHILLS 605
            G+LEEA   I+ MP EPNDVVWG+LL+ACR HKNVELA YAA+++T+LAPER GIH+LLS
Sbjct: 615  GLLEEAVDLIQSMPIEPNDVVWGSLLAACRKHKNVELAHYAAEKLTQLAPERVGIHVLLS 674

Query: 606  NVYASVGKWTDVARVRMQLKEKGWHKPPGSSSIEVNGTINEFIASDESHPQMTHIARMLE 785
            N+YAS GKWTDVARVR+Q+KEKG  K PGSSSIEV G I+EF + DESH + THI  MLE
Sbjct: 675  NIYASAGKWTDVARVRLQMKEKGVQKVPGSSSIEVQGLIHEFTSGDESHAENTHIGLMLE 734

Query: 786  EMCCRLKDAGHVPNLSHVLLDINEHEKEHALNRHSEKLTIAFGLISTYHRGQIRVVKNLQ 965
            E+ CRL +AG+VP+ ++VLLD++E EKEH L+RHSEKL +A+GLI+T     IRVVKNL+
Sbjct: 735  EINCRLSEAGYVPDTTNVLLDVDEQEKEHLLSRHSEKLAMAYGLITTGQGIPIRVVKNLR 794

Query: 966  MCADCHTFAKFVSETYSREI 1025
            MC+DCH+FAK VS+ Y+REI
Sbjct: 795  MCSDCHSFAKLVSKLYNREI 814



 Score = 26.6 bits (57), Expect(2) = 3e-74
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = +1

Query: 1030 GLCSCRDYW 1056
            G CSCRDYW
Sbjct: 828  GFCSCRDYW 836


>ref|XP_003610748.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
            gi|355512083|gb|AES93706.1| Pentatricopeptide
            repeat-containing protein [Medicago truncatula]
          Length = 828

 Score =  259 bits (662), Expect(2) = 1e-67
 Identities = 121/200 (60%), Positives = 158/200 (79%)
 Frame = +3

Query: 426  GMLEEAHKFIKCMPTEPNDVVWGALLSACRIHKNVELATYAAKRVTKLAPERTGIHILLS 605
            G+LEEA   +K MP +PNDV+WG+ L+ACR HKNVE A YA +++T+LAPE+ GIH+LLS
Sbjct: 607  GLLEEAFDLMKSMPIKPNDVIWGSFLAACRKHKNVEFANYADEKITQLAPEKVGIHVLLS 666

Query: 606  NVYASVGKWTDVARVRMQLKEKGWHKPPGSSSIEVNGTINEFIASDESHPQMTHIARMLE 785
            N+YAS GKW DVARVR+Q+KEKG+ K  GSSSIEV+G I EF + DESH +   I  ML+
Sbjct: 667  NIYASAGKWNDVARVRLQMKEKGFQKVAGSSSIEVHGLIREFTSGDESHTENAQIGLMLQ 726

Query: 786  EMCCRLKDAGHVPNLSHVLLDINEHEKEHALNRHSEKLTIAFGLISTYHRGQIRVVKNLQ 965
            E+ CR+   G+VP+ ++VL+D++E EKEH L+RHSEKL +A+GLI+T     IRVVKNL+
Sbjct: 727  EINCRISQVGYVPDTTNVLVDVDEQEKEHLLSRHSEKLAMAYGLINTGKGIPIRVVKNLR 786

Query: 966  MCADCHTFAKFVSETYSREI 1025
            MC+DCH+FAK VS+ Y REI
Sbjct: 787  MCSDCHSFAKLVSKLYGREI 806



 Score = 25.0 bits (53), Expect(2) = 1e-67
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = +1

Query: 1030 GLCSCRDYW 1056
            G CSCRD+W
Sbjct: 820  GFCSCRDFW 828