BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00017280
         (1904 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAN69960.1| hypothetical protein VITISV_032887 [Vitis vinifera]   575   e-161
ref|XP_003626687.1| Pentatricopeptide repeat-containing protein ...   537   e-150
ref|XP_002521681.1| pentatricopeptide repeat-containing protein,...   534   e-149
ref|XP_002306437.1| predicted protein [Populus trichocarpa] gi|2...   515   e-143
ref|XP_003595941.1| Pentatricopeptide repeat-containing protein ...   514   e-143

>emb|CAN69960.1| hypothetical protein VITISV_032887 [Vitis vinifera]
          Length = 472

 Score =  575 bits (1482), Expect = e-161
 Identities = 277/423 (65%), Positives = 344/423 (81%), Gaps = 2/423 (0%)
 Frame = +1

Query: 118  SNKTLTPSPQPKP--IFHSPSLSNAKKTFDQIISTSQIPLDLRHYNSLLKSFSQISNIHD 291
            + KT TP   PK   IF+SP+L +AKK F  I +TS  PLDLR +N+LL+S+S IS ++D
Sbjct: 53   TKKTRTPIEDPKSPVIFNSPNLLDAKKLFASITTTSTTPLDLRFHNALLQSYSSISTVND 112

Query: 292  SFSFLQYMTKKNHPNFTPDHSTYNILLTQSCKIPPNHSQDHSDLSVIRKTLDLMVENQVP 471
            S SFL++M K + P+F+P+ STY+ILL+QSCK P      +SDLS + +TL+LMV +  P
Sbjct: 113  SISFLRHMIK-SQPSFSPERSTYHILLSQSCKSP------NSDLSAVHQTLNLMVTHGFP 165

Query: 472  PDHVAVDLAVRTLCSVSREEDAIQMIKEMGVKYSEPDMFTFNFMVRHLCKTRSLNYVYEF 651
            PD V  D+AVR+LCS  REE AI+++KE+ +K+S PD FT+NF++RHLCKTR+L+ VY F
Sbjct: 166  PDRVTTDIAVRSLCSAGREEHAIELVKELSLKHSPPDSFTYNFIIRHLCKTRALSTVYNF 225

Query: 652  IDEMKEELSLQPDLVTYTILIENVCNGKNFREATRLLSVLADAGFKPDCFLYNTIMKGYC 831
            IDE++    L+PDLVTYTILI+NVCNGKN REATRLL VL +AGFKPDC++YNTIMKGYC
Sbjct: 226  IDELQNSFQLKPDLVTYTILIDNVCNGKNLREATRLLEVLGEAGFKPDCYVYNTIMKGYC 285

Query: 832  MLDRGSEVIGVYKRMKEEGVEPDLVTYNTLIYGLSKVGRVDEARQFLGVMTEMGHFPDTI 1011
            +LD+GSE IGVYK+MKEEGVEPDLVTYNTLI+GLSK GRV EAR+FL +M EMGHFPD +
Sbjct: 286  ILDKGSEAIGVYKKMKEEGVEPDLVTYNTLIFGLSKSGRVKEARKFLDIMAEMGHFPDAV 345

Query: 1012 TYTSLMNGMCRKGDALGAMTLLSRMEENGCSPNSCTYNTLLHGLCKSNLLEDGLQLYGVM 1191
            TYTSLMNG+CR+G+ALGA+ LL  ME  GCSPNSCTYNTLLHGLCK  +LE G++LYGVM
Sbjct: 346  TYTSLMNGLCREGNALGALALLEEMEAKGCSPNSCTYNTLLHGLCKLRMLERGIELYGVM 405

Query: 1192 KSAGMQLEASSYATFVRALCRDDRIAEAYEVFDYAVECKSLTDVAAYSALESTLKWAKKF 1371
            KS GM+LE +SYATFVRALC++ R+AEAYE FDY VE KS  DV AYS LE++LKW +K 
Sbjct: 406  KSGGMKLEKASYATFVRALCKEGRVAEAYEAFDYVVESKSFDDVTAYSTLENSLKWLRKA 465

Query: 1372 KEQ 1380
            +EQ
Sbjct: 466  REQ 468


>ref|XP_003626687.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
            gi|355520709|gb|AET01163.1| Pentatricopeptide
            repeat-containing protein [Medicago truncatula]
          Length = 501

 Score =  537 bits (1383), Expect = e-150
 Identities = 257/428 (60%), Positives = 336/428 (78%), Gaps = 3/428 (0%)
 Frame = +1

Query: 106  RPHNS---NKTLTPSPQPKPIFHSPSLSNAKKTFDQIISTSQIPLDLRHYNSLLKSFSQI 276
            +PH     +++ + SP+P  +F SP+L  AK  F+  +++S  P+D R +NSLL+S++ I
Sbjct: 40   KPHQKQQQSQSQSQSPKPVSVFKSPNLQEAKSIFNSFVNSSNAPIDSRFHNSLLQSYASI 99

Query: 277  SNIHDSFSFLQYMTKKNHPNFTPDHSTYNILLTQSCKIPPNHSQDHSDLSVIRKTLDLMV 456
            S I+DS +FL++MTK  HP+F+PD STY+ILLT  CK   +    +S LS+I +TL+LMV
Sbjct: 100  STINDSIAFLRHMTK-THPSFSPDKSTYHILLTHCCK---STDSKYSTLSLIHQTLNLMV 155

Query: 457  ENQVPPDHVAVDLAVRTLCSVSREEDAIQMIKEMGVKYSEPDMFTFNFMVRHLCKTRSLN 636
             + + PD   VDLAVR+LC+  R +DA+++IKE+  K+  PD++++NF+V++LCK+R+L+
Sbjct: 156  SDGISPDKGTVDLAVRSLCTADRVDDAVELIKELSSKHCSPDIYSYNFLVKNLCKSRTLS 215

Query: 637  YVYEFIDEMKEELSLQPDLVTYTILIENVCNGKNFREATRLLSVLADAGFKPDCFLYNTI 816
             VY FIDEM+ +  ++P+LVTYTILI+NVCN KN REATRL+ +L + GFKPDCFLYNTI
Sbjct: 216  LVYAFIDEMRTKFDVKPNLVTYTILIDNVCNTKNLREATRLVDILEEEGFKPDCFLYNTI 275

Query: 817  MKGYCMLDRGSEVIGVYKRMKEEGVEPDLVTYNTLIYGLSKVGRVDEARQFLGVMTEMGH 996
            MKGYCML RGSE I VY RMKE+GVEPDL+TYNTLI+GLSK GRV EA++ L VM E GH
Sbjct: 276  MKGYCMLSRGSEAIEVYNRMKEKGVEPDLITYNTLIFGLSKSGRVSEAKKLLRVMAEKGH 335

Query: 997  FPDTITYTSLMNGMCRKGDALGAMTLLSRMEENGCSPNSCTYNTLLHGLCKSNLLEDGLQ 1176
            FPD +TYTSLMNGMCRKG+ L A+ LL  ME  GCSPN+CTYNTLLHGLCKS + +  ++
Sbjct: 336  FPDEVTYTSLMNGMCRKGETLAALALLEEMEMKGCSPNTCTYNTLLHGLCKSRMFDKAME 395

Query: 1177 LYGVMKSAGMQLEASSYATFVRALCRDDRIAEAYEVFDYAVECKSLTDVAAYSALESTLK 1356
            LYG MKS G++L+ +SYATFVRALC   R+A+AYEVFDYAVE KSL+DVAAYS LESTLK
Sbjct: 396  LYGAMKSDGLKLDMASYATFVRALCSVGRVADAYEVFDYAVESKSLSDVAAYSTLESTLK 455

Query: 1357 WAKKFKEQ 1380
            W KK KE+
Sbjct: 456  WFKKAKEE 463



 Score = 66.2 bits (160), Expect = 3e-08
 Identities = 55/266 (20%), Positives = 104/266 (39%), Gaps = 2/266 (0%)
 Frame = +1

Query: 595  NFMVRHLCKTRSLNYVYEFIDEM-KEELSLQPDLVTYTILIENVCNGKNFREATRLLSVL 771
            N +++      ++N    F+  M K   S  PD  TY IL+ + C   + + +T  L   
Sbjct: 90   NSLLQSYASISTINDSIAFLRHMTKTHPSFSPDKSTYHILLTHCCKSTDSKYSTLSL--- 146

Query: 772  ADAGFKPDCFLYNTIMKGYCMLDRGSEVIGVYKRMKEEGVEPDLVTYNTLIYGLSKVGRV 951
                      ++ T+                   M  +G+ PD  T +  +  L    RV
Sbjct: 147  ----------IHQTL-----------------NLMVSDGISPDKGTVDLAVRSLCTADRV 179

Query: 952  DEARQFLGVMTEMGHFPDTITYTSLMNGMCRKGDALGAMTLLSRMEEN-GCSPNSCTYNT 1128
            D+A + +  ++     PD  +Y  L+  +C+          +  M       PN  TY  
Sbjct: 180  DDAVELIKELSSKHCSPDIYSYNFLVKNLCKSRTLSLVYAFIDEMRTKFDVKPNLVTYTI 239

Query: 1129 LLHGLCKSNLLEDGLQLYGVMKSAGMQLEASSYATFVRALCRDDRIAEAYEVFDYAVECK 1308
            L+  +C +  L +  +L  +++  G + +   Y T ++  C   R +EA EV++   E  
Sbjct: 240  LIDNVCNTKNLREATRLVDILEEEGFKPDCFLYNTIMKGYCMLSRGSEAIEVYNRMKEKG 299

Query: 1309 SLTDVAAYSALESTLKWAKKFKEQRQ 1386
               D+  Y+ L   L  + +  E ++
Sbjct: 300  VEPDLITYNTLIFGLSKSGRVSEAKK 325


>ref|XP_002521681.1| pentatricopeptide repeat-containing protein, putative [Ricinus
            communis] gi|223539072|gb|EEF40668.1| pentatricopeptide
            repeat-containing protein, putative [Ricinus communis]
          Length = 458

 Score =  534 bits (1376), Expect = e-149
 Identities = 258/416 (62%), Positives = 328/416 (78%), Gaps = 1/416 (0%)
 Frame = +1

Query: 136  PSP-QPKPIFHSPSLSNAKKTFDQIISTSQIPLDLRHYNSLLKSFSQISNIHDSFSFLQY 312
            P+P Q K +F SP L+ AK+ F+ +IST+++PLDLR ++S L+S+S IS I DS S L++
Sbjct: 46   PTPIQQKRLFKSPELNEAKEIFNSLISTTRVPLDLRFHHSFLQSYSSISTIDDSISLLRH 105

Query: 313  MTKKNHPNFTPDHSTYNILLTQSCKIPPNHSQDHSDLSVIRKTLDLMVENQVPPDHVAVD 492
            M K   P+FTP  STY+ILL+QSCK P         LS + + L+LMV N   P  V VD
Sbjct: 106  MIK-TLPSFTPTISTYHILLSQSCKAPD------PTLSPVHQILNLMVNNGFMPTQVTVD 158

Query: 493  LAVRTLCSVSREEDAIQMIKEMGVKYSEPDMFTFNFMVRHLCKTRSLNYVYEFIDEMKEE 672
            +AVR LCS  +E+DA++++KE+ +K+S+PD FT+NF+V+ LCK R+L+ VY FIDEM+  
Sbjct: 159  IAVRALCSAGKEDDAVKLVKELSLKHSKPDSFTYNFLVKCLCKCRALSNVYSFIDEMRSS 218

Query: 673  LSLQPDLVTYTILIENVCNGKNFREATRLLSVLADAGFKPDCFLYNTIMKGYCMLDRGSE 852
              L+P+LVTYTILI+NVCN KN REA RLL +L + GFKPDCF+YNTIMKGYCML +GS+
Sbjct: 219  FDLEPNLVTYTILIDNVCNSKNLREAMRLLGILRECGFKPDCFVYNTIMKGYCMLSKGSD 278

Query: 853  VIGVYKRMKEEGVEPDLVTYNTLIYGLSKVGRVDEARQFLGVMTEMGHFPDTITYTSLMN 1032
             I V+K+MKEEG+EPDL+TYNTLI+GLSK GRV EA+++L +M E GHFPD +TYTSLMN
Sbjct: 279  AIQVFKKMKEEGIEPDLITYNTLIFGLSKGGRVSEAKRYLKIMVESGHFPDAVTYTSLMN 338

Query: 1033 GMCRKGDALGAMTLLSRMEENGCSPNSCTYNTLLHGLCKSNLLEDGLQLYGVMKSAGMQL 1212
            G+CRKGDALGA+ LL  ME  GCSPNSCTYNTLL+GLCK  LLE G++LY V+K  GM L
Sbjct: 339  GLCRKGDALGALALLEDMEMKGCSPNSCTYNTLLYGLCKERLLEKGIELYNVIKEGGMLL 398

Query: 1213 EASSYATFVRALCRDDRIAEAYEVFDYAVECKSLTDVAAYSALESTLKWAKKFKEQ 1380
            + +SYATFVRALCR+ ++AEAYEVFDYAVE KSLT+ AAY+ LESTLKW KK +EQ
Sbjct: 399  DTASYATFVRALCREGKVAEAYEVFDYAVESKSLTNAAAYTTLESTLKWLKKAREQ 454


>ref|XP_002306437.1| predicted protein [Populus trichocarpa] gi|222855886|gb|EEE93433.1|
            predicted protein [Populus trichocarpa]
          Length = 462

 Score =  515 bits (1326), Expect = e-143
 Identities = 257/438 (58%), Positives = 320/438 (73%), Gaps = 13/438 (2%)
 Frame = +1

Query: 106  RPHNSNKTLTPSPQPKP-----------IFHSPSLSNAKKTFDQIISTSQIPL--DLRHY 246
            +PH   K LT    PKP           +F + SL+ AK  F+  IST++ PL  +LR +
Sbjct: 28   QPHYFPKKLTKKNSPKPHETETPPPHKSLFKTSSLNEAKSLFNSFISTTKAPLLDNLRLH 87

Query: 247  NSLLKSFSQISNIHDSFSFLQYMTKKNHPNFTPDHSTYNILLTQSCKIPPNHSQDHSDLS 426
            NS L+S++ IS + DS S L +M K   P+ +PD STY++LL+QSC+ P       S LS
Sbjct: 88   NSFLQSYTSISTLDDSISLLDHMVK-TLPSLSPDRSTYHVLLSQSCREPD------SSLS 140

Query: 427  VIRKTLDLMVENQVPPDHVAVDLAVRTLCSVSREEDAIQMIKEMGVKYSEPDMFTFNFMV 606
              +K L+LM+     P+   VD+A+R+LCS  R +DAI ++KE   K+S+PD FT+NF+V
Sbjct: 141  SAQKVLNLMINKGFKPNQFTVDVAIRSLCSAGRVDDAILLVKEFSSKHSKPDTFTYNFLV 200

Query: 607  RHLCKTRSLNYVYEFIDEMKEELSLQPDLVTYTILIENVCNGKNFREATRLLSVLADAGF 786
            + LCK+R  N VY FIDEMK    ++PDLVTYTILI+NVCN KN REA RL++VL + G 
Sbjct: 201  KCLCKSRIFNSVYSFIDEMKSSFDIKPDLVTYTILIDNVCNAKNIREADRLVAVLKECGL 260

Query: 787  KPDCFLYNTIMKGYCMLDRGSEVIGVYKRMKEEGVEPDLVTYNTLIYGLSKVGRVDEARQ 966
            KPD FLYNTIMKGYC+L++G E + +YK+MKEEGVEPDLVTYNTLI+GLSK GRV EA++
Sbjct: 261  KPDAFLYNTIMKGYCLLNKGIEAVRIYKQMKEEGVEPDLVTYNTLIFGLSKCGRVSEAKK 320

Query: 967  FLGVMTEMGHFPDTITYTSLMNGMCRKGDALGAMTLLSRMEENGCSPNSCTYNTLLHGLC 1146
             L +M E GHFPD +TYTSLMNGMCR+GD LGA  LL  ME  GCSPNSCTYNTLLHG C
Sbjct: 321  LLKIMVESGHFPDAVTYTSLMNGMCREGDVLGAAALLEEMELKGCSPNSCTYNTLLHGFC 380

Query: 1147 KSNLLEDGLQLYGVMKSAGMQLEASSYATFVRALCRDDRIAEAYEVFDYAVECKSLTDVA 1326
            K   L  G++LYGV+K  GM+LE +SYATFVRALCR+ R+AEAYEVFDYAVE KSLTDVA
Sbjct: 381  KGRRLNKGVELYGVIKKGGMKLETASYATFVRALCREGRVAEAYEVFDYAVESKSLTDVA 440

Query: 1327 AYSALESTLKWAKKFKEQ 1380
            AY+ LESTLKW KK +EQ
Sbjct: 441  AYTTLESTLKWLKKAREQ 458


>ref|XP_003595941.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
            gi|355484989|gb|AES66192.1| Pentatricopeptide
            repeat-containing protein [Medicago truncatula]
          Length = 472

 Score =  514 bits (1324), Expect = e-143
 Identities = 250/428 (58%), Positives = 328/428 (76%), Gaps = 3/428 (0%)
 Frame = +1

Query: 106  RPHNS---NKTLTPSPQPKPIFHSPSLSNAKKTFDQIISTSQIPLDLRHYNSLLKSFSQI 276
            +PH     +++ + SP+P  +F SP+L  AK  F+  +++S  P+D R +NSLL+S++ I
Sbjct: 56   KPHQKQQQSQSQSQSPKPVSVFKSPNLQEAKSIFNSFVNSSNAPIDSRFHNSLLQSYASI 115

Query: 277  SNIHDSFSFLQYMTKKNHPNFTPDHSTYNILLTQSCKIPPNHSQDHSDLSVIRKTLDLMV 456
            S I+DS +FL++MTK  HP+F+PD STY+ILLT  CK   +    +S LS+I +TL+LMV
Sbjct: 116  STINDSIAFLRHMTK-THPSFSPDKSTYHILLTHCCK---STDSKYSTLSLIHQTLNLMV 171

Query: 457  ENQVPPDHVAVDLAVRTLCSVSREEDAIQMIKEMGVKYSEPDMFTFNFMVRHLCKTRSLN 636
             + + PD   VDLAVR+LC+  R +DA+++IKE+  K+  PD++++NF+V++LCK+R+L+
Sbjct: 172  SDGISPDKGTVDLAVRSLCTADRVDDAVELIKELSSKHCSPDIYSYNFLVKNLCKSRTLS 231

Query: 637  YVYEFIDEMKEELSLQPDLVTYTILIENVCNGKNFREATRLLSVLADAGFKPDCFLYNTI 816
             VY             P+LVTYTILI+NVCN KN REATRL+ +L + GFKPDCFLYNTI
Sbjct: 232  LVY-------------PNLVTYTILIDNVCNTKNLREATRLVDILEEEGFKPDCFLYNTI 278

Query: 817  MKGYCMLDRGSEVIGVYKRMKEEGVEPDLVTYNTLIYGLSKVGRVDEARQFLGVMTEMGH 996
            MKGYCML RGSE I VY RMKE+GVEPDL+TYNTLI+GLSK GRV EA++ L VM E GH
Sbjct: 279  MKGYCMLSRGSEAIEVYNRMKEKGVEPDLITYNTLIFGLSKSGRVSEAKKLLRVMAEKGH 338

Query: 997  FPDTITYTSLMNGMCRKGDALGAMTLLSRMEENGCSPNSCTYNTLLHGLCKSNLLEDGLQ 1176
            FPD +TYTSLMNGMCRKG+ L A+ LL  ME  GCSPN+CTYNTLLHGLCKS + +  ++
Sbjct: 339  FPDEVTYTSLMNGMCRKGETLAALALLEEMEMKGCSPNTCTYNTLLHGLCKSRMFDKAME 398

Query: 1177 LYGVMKSAGMQLEASSYATFVRALCRDDRIAEAYEVFDYAVECKSLTDVAAYSALESTLK 1356
            LYG MKS G++L+ +SYATFVRALC   R+A+AYEVFDYAVE KSL+DVAAYS LESTLK
Sbjct: 399  LYGAMKSDGLKLDMASYATFVRALCSVGRVADAYEVFDYAVESKSLSDVAAYSTLESTLK 458

Query: 1357 WAKKFKEQ 1380
            W++K K++
Sbjct: 459  WSRKQKKK 466