BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00017247
         (283 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002269045.1| PREDICTED: transcription initiation factor I...   127   7e-28
ref|XP_002284342.1| PREDICTED: transcription initiation factor I...   127   7e-28
ref|NP_001238343.1| transcription initiation factor IIB [Glycine...   126   2e-27
ref|XP_003519077.1| PREDICTED: transcription initiation factor I...   126   2e-27
ref|XP_002534470.1| transcription initiation factor iib, putativ...   123   2e-26

>ref|XP_002269045.1| PREDICTED: transcription initiation factor IIB-2 [Vitis vinifera]
           gi|296088031|emb|CBI35314.3| unnamed protein product
           [Vitis vinifera]
          Length = 312

 Score =  127 bits (320), Expect = 7e-28
 Identities = 57/62 (91%), Positives = 60/62 (96%)
 Frame = +3

Query: 96  DSYCTDCKKNTEVVMDHSAGDTVCSECGLVLEAHSIDETSEWRTFANESGDNDPNRVGGP 275
           D++CTDCKKNTEVV DHSAGDTVCSECGLVLE+HSIDETSEWRTFANESGDNDP RVGGP
Sbjct: 3   DAFCTDCKKNTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGP 62

Query: 276 SN 281
           SN
Sbjct: 63  SN 64


>ref|XP_002284342.1| PREDICTED: transcription initiation factor IIB-2 [Vitis vinifera]
           gi|297739630|emb|CBI29812.3| unnamed protein product
           [Vitis vinifera]
          Length = 312

 Score =  127 bits (320), Expect = 7e-28
 Identities = 57/62 (91%), Positives = 60/62 (96%)
 Frame = +3

Query: 96  DSYCTDCKKNTEVVMDHSAGDTVCSECGLVLEAHSIDETSEWRTFANESGDNDPNRVGGP 275
           D++CTDCKKNTEVV DHSAGDTVCSECGLVLE+HSIDETSEWRTFANESGDNDP RVGGP
Sbjct: 3   DAFCTDCKKNTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGP 62

Query: 276 SN 281
           SN
Sbjct: 63  SN 64


>ref|NP_001238343.1| transcription initiation factor IIB [Glycine max]
           gi|1351222|sp|P48513.1|TF2B_SOYBN RecName:
           Full=Transcription initiation factor IIB; AltName:
           Full=General transcription factor TFIIB
           gi|945087|gb|AAB09756.1| transcription factor TFIIB
           [Glycine max]
          Length = 313

 Score =  126 bits (316), Expect = 2e-27
 Identities = 55/62 (88%), Positives = 60/62 (96%)
 Frame = +3

Query: 96  DSYCTDCKKNTEVVMDHSAGDTVCSECGLVLEAHSIDETSEWRTFANESGDNDPNRVGGP 275
           D++C+DCK+ TEVV DHSAGDTVCSECGLVLE+HSIDETSEWRTFANESGDNDPNRVGGP
Sbjct: 3   DAFCSDCKRQTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPNRVGGP 62

Query: 276 SN 281
           SN
Sbjct: 63  SN 64


>ref|XP_003519077.1| PREDICTED: transcription initiation factor IIB-like [Glycine max]
          Length = 314

 Score =  126 bits (316), Expect = 2e-27
 Identities = 55/62 (88%), Positives = 60/62 (96%)
 Frame = +3

Query: 96  DSYCTDCKKNTEVVMDHSAGDTVCSECGLVLEAHSIDETSEWRTFANESGDNDPNRVGGP 275
           D++C+DCK+ TEVV DHSAGDTVCSECGLVLE+HSIDETSEWRTFANESGDNDPNRVGGP
Sbjct: 3   DAFCSDCKRQTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPNRVGGP 62

Query: 276 SN 281
           SN
Sbjct: 63  SN 64


>ref|XP_002534470.1| transcription initiation factor iib, putative [Ricinus communis]
           gi|223525233|gb|EEF27913.1| transcription initiation
           factor iib, putative [Ricinus communis]
          Length = 312

 Score =  123 bits (308), Expect = 2e-26
 Identities = 54/62 (87%), Positives = 59/62 (95%)
 Frame = +3

Query: 96  DSYCTDCKKNTEVVMDHSAGDTVCSECGLVLEAHSIDETSEWRTFANESGDNDPNRVGGP 275
           D+YC+DCK+ TEVV DHSAGDTVCSECGLVLE+HSIDETSEWRTFANESGDNDP RVGGP
Sbjct: 3   DAYCSDCKRQTEVVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPVRVGGP 62

Query: 276 SN 281
           +N
Sbjct: 63  TN 64