BLASTX nr result
ID: Coptis21_contig00017000
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis21_contig00017000
(1078 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|EEE50824.1| hypothetical protein OsJ_31232 [Oryza sativa Japo... 271 2e-70
gb|AAM18736.1|AC092548_14 putative reverse transcriptase [Oryza ... 271 2e-70
gb|AAP53315.2| retrotransposon protein, putative, unclassified [... 271 2e-70
gb|ABA98491.1| retrotransposon protein, putative, unclassified [... 270 3e-70
gb|AAC63844.1| putative non-LTR retroelement reverse transcripta... 267 4e-69
>gb|EEE50824.1| hypothetical protein OsJ_31232 [Oryza sativa Japonica Group]
Length = 1594
Score = 271 bits (694), Expect = 2e-70
Identities = 145/345 (42%), Positives = 209/345 (60%), Gaps = 6/345 (1%)
Frame = +2
Query: 2 IFDNIVLAHEIVRTLKRKK-GASGCMAIKLDLSKAFDKVE*SFFLETMEALGFSEKWRNW 178
I DNI++A E+ ++ K+ G G A KLD+SKA+D+VE SF + M LGF W N
Sbjct: 775 ISDNILIADEMTHYMRNKRSGQVGYAAFKLDMSKAYDRVEWSFLHDMMLKLGFHTDWVNL 834
Query: 179 INQCISTTSLSFKINGSPMGFLKPKRGIRQGDPLSPFLFIICMEVFSRLLSKEEEEKQK- 355
I +C+ST + ++NG P+RG+RQGDPLSP+LF++C E FS LLSK EEE +
Sbjct: 835 IMKCVSTVTYRIRVNGELSESFSPERGLRQGDPLSPYLFLLCAEGFSALLSKTEEEGRLH 894
Query: 356 ----IRSDTLMSHFLFADDSFIFCRANIAETHHLKDILELFKNVSGQEINFQKSGIFFIH 523
+ +SH LFADDS I CRAN E L+ IL++++ SGQ IN KS + F
Sbjct: 895 GIRICQGAPSVSHLLFADDSLILCRANGGEAQQLQTILQIYEECSGQVINKDKSAVMFSP 954
Query: 524 NTHHRHQRIVKRIMKIGKTITHEKYLGAPLILRRKSRIDFDEVLERIFQMMEGWRAKLLS 703
NT + V + + + T+EKYLG P+ + R F + ERI+Q ++GW+ KLLS
Sbjct: 955 NTSSLEKGAVMAALNMQRETTNEKYLGLPVFVGRSRTKIFSYLKERIWQRIQGWKEKLLS 1014
Query: 704 QARKLTLINAVTSAIPSYMMSVFQLPTSTCNKLDSLNASFFWGKKYDNTNKVHYISWNKI 883
+A K LI AV AIP++ M F+L C+++ + A ++W + + NK+H++SWNK+
Sbjct: 1015 RAGKEILIKAVAQAIPTFAMGCFELTKDLCDQISKMIAKYWWSNQ-EKDNKMHWLSWNKL 1073
Query: 884 CLPKSSGGLGIRRASHHNTALQAKLFWRILKEPNKPWVVSLRKKY 1018
LPK+ GGLG R N A+ AK WR++++P+ LR KY
Sbjct: 1074 TLPKNMGGLGFRDIYIFNLAMLAKQGWRLIQDPDSLCSRVLRAKY 1118
>gb|AAM18736.1|AC092548_14 putative reverse transcriptase [Oryza sativa Japonica Group]
Length = 1509
Score = 271 bits (693), Expect = 2e-70
Identities = 144/345 (41%), Positives = 209/345 (60%), Gaps = 6/345 (1%)
Frame = +2
Query: 2 IFDNIVLAHEIVRTLKRKK-GASGCMAIKLDLSKAFDKVE*SFFLETMEALGFSEKWRNW 178
I DNI++A+E+ ++ K+ G G A KLD+SKA+D+VE SF + M LGF W N
Sbjct: 747 ISDNILIAYEMTHYMRNKRSGQVGYAAFKLDMSKAYDRVEWSFLHDMMLKLGFHTDWVNL 806
Query: 179 INQCISTTSLSFKINGSPMGFLKPKRGIRQGDPLSPFLFIICMEVFSRLLSKEEEEKQK- 355
I +C+ST + ++NG P+RG+RQGDPLSP+LF++C E FS LLSK EEE +
Sbjct: 807 IMKCVSTVTYRIRVNGELSESFSPERGLRQGDPLSPYLFLLCAEGFSALLSKTEEEGRLH 866
Query: 356 ----IRSDTLMSHFLFADDSFIFCRANIAETHHLKDILELFKNVSGQEINFQKSGIFFIH 523
+ +SH LFADDS I CRAN E L+ IL++++ SGQ IN KS + F
Sbjct: 867 GIRICQGAPSVSHLLFADDSLILCRANGGEAQQLQTILQIYEECSGQVINKDKSAVMFSP 926
Query: 524 NTHHRHQRIVKRIMKIGKTITHEKYLGAPLILRRKSRIDFDEVLERIFQMMEGWRAKLLS 703
NT + V + + + T+EKYLG P+ + R F + ERI+Q ++GW+ KLLS
Sbjct: 927 NTSSLEKGAVMAALNMQRETTNEKYLGLPVFVGRSRTKIFSYLKERIWQRIQGWKEKLLS 986
Query: 704 QARKLTLINAVTSAIPSYMMSVFQLPTSTCNKLDSLNASFFWGKKYDNTNKVHYISWNKI 883
+A K LI AV IP++ M F+L C+++ + A ++W + + NK+H++SWNK+
Sbjct: 987 RAGKEILIKAVAQVIPTFAMGCFELTKDLCDQISKMIAKYWWSNQ-EKDNKMHWLSWNKL 1045
Query: 884 CLPKSSGGLGIRRASHHNTALQAKLFWRILKEPNKPWVVSLRKKY 1018
LPK+ GGLG R N A+ AK WR++++P+ LR KY
Sbjct: 1046 TLPKNMGGLGFRDIYIFNLAMLAKQGWRLIQDPDSLCSRVLRAKY 1090
>gb|AAP53315.2| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 1505
Score = 271 bits (693), Expect = 2e-70
Identities = 144/345 (41%), Positives = 209/345 (60%), Gaps = 6/345 (1%)
Frame = +2
Query: 2 IFDNIVLAHEIVRTLKRKK-GASGCMAIKLDLSKAFDKVE*SFFLETMEALGFSEKWRNW 178
I DNI++A+E+ ++ K+ G G A KLD+SKA+D+VE SF + M LGF W N
Sbjct: 743 ISDNILIAYEMTHYMRNKRSGQVGYAAFKLDMSKAYDRVEWSFLHDMMLKLGFHTDWVNL 802
Query: 179 INQCISTTSLSFKINGSPMGFLKPKRGIRQGDPLSPFLFIICMEVFSRLLSKEEEEKQK- 355
I +C+ST + ++NG P+RG+RQGDPLSP+LF++C E FS LLSK EEE +
Sbjct: 803 IMKCVSTVTYRIRVNGELSESFSPERGLRQGDPLSPYLFLLCAEGFSALLSKTEEEGRLH 862
Query: 356 ----IRSDTLMSHFLFADDSFIFCRANIAETHHLKDILELFKNVSGQEINFQKSGIFFIH 523
+ +SH LFADDS I CRAN E L+ IL++++ SGQ IN KS + F
Sbjct: 863 GIRICQGAPSVSHLLFADDSLILCRANGGEAQQLQTILQIYEECSGQVINKDKSAVMFSP 922
Query: 524 NTHHRHQRIVKRIMKIGKTITHEKYLGAPLILRRKSRIDFDEVLERIFQMMEGWRAKLLS 703
NT + V + + + T+EKYLG P+ + R F + ERI+Q ++GW+ KLLS
Sbjct: 923 NTSSLEKGAVMAALNMQRETTNEKYLGLPVFVGRSRTKIFSYLKERIWQRIQGWKEKLLS 982
Query: 704 QARKLTLINAVTSAIPSYMMSVFQLPTSTCNKLDSLNASFFWGKKYDNTNKVHYISWNKI 883
+A K LI AV IP++ M F+L C+++ + A ++W + + NK+H++SWNK+
Sbjct: 983 RAGKEILIKAVAQVIPTFAMGCFELTKDLCDQISKMIAKYWWSNQ-EKDNKMHWLSWNKL 1041
Query: 884 CLPKSSGGLGIRRASHHNTALQAKLFWRILKEPNKPWVVSLRKKY 1018
LPK+ GGLG R N A+ AK WR++++P+ LR KY
Sbjct: 1042 TLPKNMGGLGFRDIYIFNLAMLAKQGWRLIQDPDSLCSRVLRAKY 1086
>gb|ABA98491.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 1621
Score = 270 bits (691), Expect = 3e-70
Identities = 144/345 (41%), Positives = 209/345 (60%), Gaps = 6/345 (1%)
Frame = +2
Query: 2 IFDNIVLAHEIVRTLKRKK-GASGCMAIKLDLSKAFDKVE*SFFLETMEALGFSEKWRNW 178
I DNI++A E+ ++ K+ G G A KLD+SKA+D+VE SF + + LGF W N
Sbjct: 802 ISDNILIADEMTHYMRNKRSGQVGYAAFKLDMSKAYDRVEWSFLHDMILKLGFHTDWVNL 861
Query: 179 INQCISTTSLSFKINGSPMGFLKPKRGIRQGDPLSPFLFIICMEVFSRLLSKEEEEKQK- 355
I +C+ST + ++NG P RG+RQGDPLSP+LF++C E FS LLSK EEE +
Sbjct: 862 IMKCVSTVTYRIRVNGELSESFSPGRGLRQGDPLSPYLFLLCAEGFSALLSKTEEEGRLH 921
Query: 356 ----IRSDTLMSHFLFADDSFIFCRANIAETHHLKDILELFKNVSGQEINFQKSGIFFIH 523
+ +SH LFADDS I CRAN E L+ IL++++ SGQ IN KS + F
Sbjct: 922 GIRICQGAPSVSHLLFADDSLILCRANGGEAQQLQTILQIYEECSGQVINKDKSAVMFSP 981
Query: 524 NTHHRHQRIVKRIMKIGKTITHEKYLGAPLILRRKSRIDFDEVLERIFQMMEGWRAKLLS 703
NT +R V + + + T+E+YLG P+ + R F + ERI+Q ++GW+ KLLS
Sbjct: 982 NTSSLEKRAVMAALNMQRETTNERYLGLPVFVGRSRTKIFSYLKERIWQRIQGWKEKLLS 1041
Query: 704 QARKLTLINAVTSAIPSYMMSVFQLPTSTCNKLDSLNASFFWGKKYDNTNKVHYISWNKI 883
+A K LI AV AIP++ M F+L C+++ + A ++W + + NK+H++SWNK+
Sbjct: 1042 RAGKEILIKAVAQAIPTFAMGCFELTKDLCDQISKMIAKYWWSNQ-EKDNKMHWLSWNKL 1100
Query: 884 CLPKSSGGLGIRRASHHNTALQAKLFWRILKEPNKPWVVSLRKKY 1018
LPK+ GGLG R N A+ AK WR++++P+ LR KY
Sbjct: 1101 TLPKNMGGLGFRDIYIFNLAMLAKQGWRLIQDPDSLCSRVLRAKY 1145
>gb|AAC63844.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1231
Score = 267 bits (682), Expect = 4e-69
Identities = 142/345 (41%), Positives = 205/345 (59%), Gaps = 5/345 (1%)
Frame = +2
Query: 8 DNIVLAHEIVRTLKRKKGASGCMAIKLDLSKAFDKVE*SFFLETMEALGFSEKWRNWINQ 187
DNIVL E V +++RKKG G M +KLDL KA+D+V F ET+EA G SE W + I
Sbjct: 412 DNIVLVQEAVHSMRRKKGRKGWMLLKLDLEKAYDRVRWDFLQETLEAAGLSEGWTSRIMA 471
Query: 188 CISTTSLSFKINGSPMGFLKPKRGIRQGDPLSPFLFIICMEVFSRLL--SKEEEEKQKIR 361
++ S+S NG P RG+RQGDPLSP+LF++C+E L+ S + E + I
Sbjct: 472 GVTDPSMSVLWNGERTDSFVPARGLRQGDPLSPYLFVLCLERLCHLIEASVGKREWKPIA 531
Query: 362 ---SDTLMSHFLFADDSFIFCRANIAETHHLKDILELFKNVSGQEINFQKSGIFFIHNTH 532
+ +SH FADD +F A++A+ ++ +LE F SGQ+++ +KS IFF HN
Sbjct: 532 VSCGGSKLSHVCFADDLILFAEASVAQIRIIRRVLERFCEASGQKVSLEKSKIFFSHNVS 591
Query: 533 HRHQRIVKRIMKIGKTITHEKYLGAPLILRRKSRIDFDEVLERIFQMMEGWRAKLLSQAR 712
++++ IG T KYLG P++ +R ++ F EVLER+ + GW+ + LS A
Sbjct: 592 REMEQLISEESGIGCTKELGKYLGMPILQKRMNKETFGEVLERVSARLAGWKGRSLSLAG 651
Query: 713 KLTLINAVTSAIPSYMMSVFQLPTSTCNKLDSLNASFFWGKKYDNTNKVHYISWNKICLP 892
++TL AV S+IP ++MS LP ST + LD + +F WG + K H +SW KIC P
Sbjct: 652 RITLTKAVLSSIPVHVMSAILLPVSTLDTLDRYSRTFLWGSTMEK-KKQHLLSWRKICKP 710
Query: 893 KSSGGLGIRRASHHNTALQAKLFWRILKEPNKPWVVSLRKKYVHG 1027
K+ GG+G+R A N AL AK+ WR+L++ W +RKKY G
Sbjct: 711 KAEGGIGLRSARDMNKALVAKVGWRLLQDKESLWARVVRKKYKVG 755