BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00016896
         (766 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002268821.1| PREDICTED: pentatricopeptide repeat-containi...   272   7e-71
ref|XP_002873660.1| pentatricopeptide repeat-containing protein ...   224   1e-56
ref|XP_002526948.1| pentatricopeptide repeat-containing protein,...   217   2e-54
ref|XP_003548551.1| PREDICTED: pentatricopeptide repeat-containi...   217   3e-54
ref|NP_190245.1| pentatricopeptide repeat-containing protein [Ar...   211   1e-52

>ref|XP_002268821.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46610
           [Vitis vinifera]
          Length = 763

 Score =  272 bits (695), Expect = 7e-71
 Identities = 143/255 (56%), Positives = 180/255 (70%)
 Frame = +2

Query: 2   RSSVGVSSALTWAVEQEETGNGVSVESTSLIGELSDKSDSVEVDCGNTDEGADSKTVDVV 181
           R S G S AL WA+EQ+  GN    E ++ I  L+  +++V++DC   D   D    D  
Sbjct: 97  RGSFGASFALAWALEQQAIGNEFVKEDSNSIHSLAGNTETVDIDCLKVDGARDGDEND-- 154

Query: 182 TEGNGNGQNENDLGERTSIRVDVRALAGRLQFAKTADDVEVILREMEELPLPVYSSMIRG 361
            E     +   ++ E  S  VDVRALA  L+FA TADDVE +L++  ELPL VYS+MIRG
Sbjct: 155 NEEEKEAEKNGEVIEEKSRNVDVRALAHGLEFATTADDVEEVLKDKVELPLQVYSTMIRG 214

Query: 362 FGLDKRMESALALFEWLKMKKKTTGGRIGPNLFIFNSLLGAMKQCKQFGGVEKVMEDMAE 541
           FG DKR+++A+AL EWLK KK+T G + GPNLF++NSLLGA+KQ ++F  VEKVM DMA 
Sbjct: 215 FGTDKRLDAAMALVEWLKRKKETNGSK-GPNLFVYNSLLGAVKQSEKFALVEKVMNDMAR 273

Query: 542 EGVGCNMVTYNTLMAIYLEQGRPNRALTFLEEIEKKGMSPSPVSYSTALVAYRRMEDGNG 721
           EG+  N+VTYNTLM+IYLEQGR   AL  LEEI+K G+ PSPVSYSTAL+ YRRMEDG+G
Sbjct: 274 EGILPNVVTYNTLMSIYLEQGRSVEALNILEEIQKNGLCPSPVSYSTALLVYRRMEDGHG 333

Query: 722 GLKFFTELRDRYKKG 766
            LKFF ELR+ Y KG
Sbjct: 334 ALKFFIELRENYLKG 348


>ref|XP_002873660.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata] gi|297319497|gb|EFH49919.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 674

 Score =  224 bits (572), Expect = 1e-56
 Identities = 126/253 (49%), Positives = 164/253 (64%)
 Frame = +2

Query: 5   SSVGVSSALTWAVEQEETGNGVSVESTSLIGELSDKSDSVEVDCGNTDEGADSKTVDVVT 184
           SSVGV     WA EQ E G  VS E +S                         +TV    
Sbjct: 85  SSVGVG----WATEQRELGEEVSTEDSSY-----------------------PQTV---- 113

Query: 185 EGNGNGQNENDLGERTSIRVDVRALAGRLQFAKTADDVEVILREMEELPLPVYSSMIRGF 364
               NG      GE+T+ RVDVR LA  L+ AKTADDV+++++EM ELPL VY +MIRGF
Sbjct: 114 ----NG------GEKTNSRVDVRELAYSLRAAKTADDVDIVIKEMGELPLQVYCAMIRGF 163

Query: 365 GLDKRMESALALFEWLKMKKKTTGGRIGPNLFIFNSLLGAMKQCKQFGGVEKVMEDMAEE 544
           G DKR++ A+A+ +WL+ KK  +GG IGPNLFI+NSLLGAMKQ    G  EK++ DM EE
Sbjct: 164 GKDKRLKPAIAVVDWLRRKKSESGGVIGPNLFIYNSLLGAMKQ-SSVGEAEKILSDMEEE 222

Query: 545 GVGCNMVTYNTLMAIYLEQGRPNRALTFLEEIEKKGMSPSPVSYSTALVAYRRMEDGNGG 724
           G+  N+VTYNTLM IY+E+G  ++AL  L+ +++KG  P+P++YSTAL+ YRRMEDG G 
Sbjct: 223 GIVPNIVTYNTLMVIYMEKGEFHKALGILDLVKEKGFEPNPITYSTALLVYRRMEDGMGA 282

Query: 725 LKFFTELRDRYKK 763
           L+FF ELR++Y K
Sbjct: 283 LEFFVELREKYSK 295


>ref|XP_002526948.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223533700|gb|EEF35435.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 671

 Score =  217 bits (553), Expect = 2e-54
 Identities = 119/258 (46%), Positives = 164/258 (63%), Gaps = 9/258 (3%)
 Frame = +2

Query: 20  SSALTWAVEQEETGNGVSVESTSLIGELSDKSDSVEVDCGNTDEGADSKTVDVVTEGNGN 199
           S A  WA+++++  +       SL   L  KS+  +V+  N     DS       + + N
Sbjct: 7   SIAFAWALQKQDISSEFHGVEPSLDDGLLGKSEKEDVNPHNLGRLEDS-------DDDNN 59

Query: 200 GQNEN---------DLGERTSIRVDVRALAGRLQFAKTADDVEVILREMEELPLPVYSSM 352
            Q +N          +GE     +DVR+LA  L  A+TADDVE +L++  ELPL VYSSM
Sbjct: 60  NQEDNIELDLRSKEGVGEEKCRSIDVRSLARSLHSAQTADDVEEVLKDKGELPLQVYSSM 119

Query: 353 IRGFGLDKRMESALALFEWLKMKKKTTGGRIGPNLFIFNSLLGAMKQCKQFGGVEKVMED 532
           I+ FG D +MESALAL EWLK ++K  G  IGPNLFI+NSLL A+K+ K F   EK++ D
Sbjct: 120 IKAFGWDNKMESALALVEWLK-RRKEIGSSIGPNLFIYNSLLSAVKKSKLFEEAEKILND 178

Query: 533 MAEEGVGCNMVTYNTLMAIYLEQGRPNRALTFLEEIEKKGMSPSPVSYSTALVAYRRMED 712
           M +EG+  N+VTYNTLM IY+E+G+  +AL  LE++ +KG  P+  SYSTAL+AYR MED
Sbjct: 179 MTQEGIAPNVVTYNTLMGIYVEKGQATKALNILEQMHEKGFIPTAASYSTALLAYRGMED 238

Query: 713 GNGGLKFFTELRDRYKKG 766
           G+G L FF +++D+Y KG
Sbjct: 239 GHGALAFFVDIKDKYLKG 256


>ref|XP_003548551.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g46610-like [Glycine max]
          Length = 808

 Score =  217 bits (552), Expect = 3e-54
 Identities = 117/233 (50%), Positives = 160/233 (68%), Gaps = 7/233 (3%)
 Frame = +2

Query: 89  LIGELSDKSDSVEVDCGNTD-EGADSKTVDVVTEGNGNGQ-----NENDLGERTSI-RVD 247
           L+ E +D +D++     N D EG  S  +D V + +  G+     N  + GE  S  +VD
Sbjct: 164 LVEEQTDSNDALV----NGDLEGVKSLNLDQVKDSDCEGKMCGDDNSKEGGEEESDGKVD 219

Query: 248 VRALAGRLQFAKTADDVEVILREMEELPLPVYSSMIRGFGLDKRMESALALFEWLKMKKK 427
           VRALA  LQ  KT +DV  IL++  +LPL V+S++I GFG +KRM+SAL LF W+K +K 
Sbjct: 220 VRALALSLQTVKTVEDVGGILKDKGDLPLQVFSTIISGFGKEKRMDSALILFNWMKKRKI 279

Query: 428 TTGGRIGPNLFIFNSLLGAMKQCKQFGGVEKVMEDMAEEGVGCNMVTYNTLMAIYLEQGR 607
            T G  GPNLFI+N LLG +KQ  QF  +E ++ +MAE+G+  N+VTYNTLMAIY+E+G 
Sbjct: 280 ETNGSFGPNLFIYNGLLGVVKQSGQFAEMEVILNEMAEDGIAYNVVTYNTLMAIYIEKGE 339

Query: 608 PNRALTFLEEIEKKGMSPSPVSYSTALVAYRRMEDGNGGLKFFTELRDRYKKG 766
            ++AL  LEEI + G++PSPVSYS AL+AYRRMEDG G L FF E R++Y++G
Sbjct: 340 CDKALNMLEEIRRNGLTPSPVSYSQALLAYRRMEDGYGALNFFVEFREKYRQG 392


>ref|NP_190245.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|75206903|sp|Q9SNB7.1|PP264_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At3g46610 gi|6523064|emb|CAB62331.1| hypothetical
           protein [Arabidopsis thaliana]
           gi|332644660|gb|AEE78181.1| pentatricopeptide
           repeat-containing protein [Arabidopsis thaliana]
          Length = 665

 Score =  211 bits (537), Expect = 1e-52
 Identities = 115/254 (45%), Positives = 160/254 (62%)
 Frame = +2

Query: 2   RSSVGVSSALTWAVEQEETGNGVSVESTSLIGELSDKSDSVEVDCGNTDEGADSKTVDVV 181
           RS +G S  + WA EQ E                              + G +  + + +
Sbjct: 73  RSLLGSSFGVGWATEQREL-----------------------------ELGEEEVSTEDL 103

Query: 182 TEGNGNGQNENDLGERTSIRVDVRALAGRLQFAKTADDVEVILREMEELPLPVYSSMIRG 361
           +  NG        GE+ ++RVDVR LA  L+ AKTADDV+ +L++  ELPL V+ +MI+G
Sbjct: 104 SSANG--------GEKNNLRVDVRELAFSLRAAKTADDVDAVLKDKGELPLQVFCAMIKG 155

Query: 362 FGLDKRMESALALFEWLKMKKKTTGGRIGPNLFIFNSLLGAMKQCKQFGGVEKVMEDMAE 541
           FG DKR++ A+A+ +WLK KK  +GG IGPNLFI+NSLLGAM   + FG  EK+++DM E
Sbjct: 156 FGKDKRLKPAVAVVDWLKRKKSESGGVIGPNLFIYNSLLGAM---RGFGEAEKILKDMEE 212

Query: 542 EGVGCNMVTYNTLMAIYLEQGRPNRALTFLEEIEKKGMSPSPVSYSTALVAYRRMEDGNG 721
           EG+  N+VTYNTLM IY+E+G   +AL  L+  ++KG  P+P++YSTAL+ YRRMEDG G
Sbjct: 213 EGIVPNIVTYNTLMVIYMEEGEFLKALGILDLTKEKGFEPNPITYSTALLVYRRMEDGMG 272

Query: 722 GLKFFTELRDRYKK 763
            L+FF ELR++Y K
Sbjct: 273 ALEFFVELREKYAK 286