BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00016893
         (295 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002321027.1| predicted protein [Populus trichocarpa] gi|2...    81   8e-14
ref|XP_002871294.1| mitochondrial transcription termination fact...    80   2e-13
ref|NP_568185.1| Mitochondrial transcription termination factor ...    79   5e-13
ref|NP_176402.2| Mitochondrial transcription termination factor ...    77   2e-12
ref|XP_002304820.1| predicted protein [Populus trichocarpa] gi|2...    75   4e-12

>ref|XP_002321027.1| predicted protein [Populus trichocarpa] gi|222861800|gb|EEE99342.1|
           predicted protein [Populus trichocarpa]
          Length = 400

 Score = 81.3 bits (199), Expect = 8e-14
 Identities = 42/97 (43%), Positives = 65/97 (67%)
 Frame = +1

Query: 4   GFSHAEILSMFKKHPFGFVLSKENVESRVEFFTVKQKFELSDIAKNPVILALALEKRIIP 183
           G++  +ILS F+KHP   +LS++ +   ++FF  K  +   +I   PVIL L+LEKRIIP
Sbjct: 282 GWTKDDILSAFRKHPHCMMLSEKKIMKGLDFFVNKMGWPSKEIVHCPVILFLSLEKRIIP 341

Query: 184 RCNVLEVLYSNGLIGSRNASSITSALKLIEKKFVEKF 294
           RC V++VL+S GLI  +   S+ + L  +EK+F+E+F
Sbjct: 342 RCKVIQVLWSKGLI--KKDISLNTVLLPVEKRFLERF 376


>ref|XP_002871294.1| mitochondrial transcription termination factor family protein
           [Arabidopsis lyrata subsp. lyrata]
           gi|297317131|gb|EFH47553.1| mitochondrial transcription
           termination factor family protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 404

 Score = 79.7 bits (195), Expect = 2e-13
 Identities = 43/96 (44%), Positives = 61/96 (63%)
 Frame = +1

Query: 4   GFSHAEILSMFKKHPFGFVLSKENVESRVEFFTVKQKFELSDIAKNPVILALALEKRIIP 183
           G+S  +I+  FKKHP   +LS+  +   +EFF  +       IA+ PV+L  +LEKRIIP
Sbjct: 289 GWSEDDIMCAFKKHPHCMMLSERKINRTMEFFVNEMNLAPRSIAECPVVLFFSLEKRIIP 348

Query: 184 RCNVLEVLYSNGLIGSRNASSITSALKLIEKKFVEK 291
           RC+V +VL SNGL+  +   S+TS L  +EK F+EK
Sbjct: 349 RCSVTKVLVSNGLV--KEDWSLTSLLVPVEKVFLEK 382


>ref|NP_568185.1| Mitochondrial transcription termination factor family protein
           [Arabidopsis thaliana]
           gi|13878065|gb|AAK44110.1|AF370295_1 unknown protein
           [Arabidopsis thaliana] gi|6562304|emb|CAB62602.1|
           putative protein [Arabidopsis thaliana]
           gi|10176724|dbj|BAB09954.1| unnamed protein product
           [Arabidopsis thaliana] gi|17104655|gb|AAL34216.1|
           unknown protein [Arabidopsis thaliana]
           gi|21592327|gb|AAM64278.1| unknown [Arabidopsis
           thaliana] gi|332003836|gb|AED91219.1| Mitochondrial
           transcription termination factor family protein
           [Arabidopsis thaliana]
          Length = 405

 Score = 78.6 bits (192), Expect = 5e-13
 Identities = 42/96 (43%), Positives = 61/96 (63%)
 Frame = +1

Query: 4   GFSHAEILSMFKKHPFGFVLSKENVESRVEFFTVKQKFELSDIAKNPVILALALEKRIIP 183
           G+S  +I+  FKKHP   +LS+  +   +E+F  +       IA+ PV+L  +LEKRIIP
Sbjct: 290 GWSEDDIMCAFKKHPHCMMLSERKINRTMEYFVNEMNMAPRSIAQCPVVLFFSLEKRIIP 349

Query: 184 RCNVLEVLYSNGLIGSRNASSITSALKLIEKKFVEK 291
           RC+V +VL SNGL+  +   S+TS L  +EK F+EK
Sbjct: 350 RCSVTKVLVSNGLV--KEDWSLTSLLVPVEKVFLEK 383


>ref|NP_176402.2| Mitochondrial transcription termination factor family protein
           [Arabidopsis thaliana] gi|26450724|dbj|BAC42471.1|
           unknown protein [Arabidopsis thaliana]
           gi|28951041|gb|AAO63444.1| At1g62110 [Arabidopsis
           thaliana] gi|332195803|gb|AEE33924.1| Mitochondrial
           transcription termination factor family protein
           [Arabidopsis thaliana]
          Length = 462

 Score = 76.6 bits (187), Expect = 2e-12
 Identities = 37/100 (37%), Positives = 59/100 (59%), Gaps = 2/100 (2%)
 Frame = +1

Query: 1   LGFSHAEILSMFKKHPFGFVLSKENVESRVEFFTVKQKFELSDIAKNPVILALALEKRII 180
           LGFS  E ++M K+ P   +LS E V+ ++EF   K  + L D+  NP +L   LEKR +
Sbjct: 339 LGFSRDEFITMVKRFPQCLILSAETVKKKIEFVVKKMNWPLKDVVSNPTVLGYNLEKRTV 398

Query: 181 PRCNVLEVLYSNGLIGSRNAS--SITSALKLIEKKFVEKF 294
           PRCNV+E L S  L+G   +    ++S L   ++ F++++
Sbjct: 399 PRCNVIEALMSKRLLGDTGSELPPMSSVLVCTDELFLKRY 438


>ref|XP_002304820.1| predicted protein [Populus trichocarpa] gi|222842252|gb|EEE79799.1|
           predicted protein [Populus trichocarpa]
          Length = 382

 Score = 75.5 bits (184), Expect = 4e-12
 Identities = 40/97 (41%), Positives = 59/97 (60%)
 Frame = +1

Query: 1   LGFSHAEILSMFKKHPFGFVLSKENVESRVEFFTVKQKFELSDIAKNPVILALALEKRII 180
           +G++  E+L  FK+ P+  + S+E + S ++FF  K K E   I  NP +L  +   RI+
Sbjct: 264 VGWTEEEVLWAFKRFPYILLTSEEKIRSMMDFFLNKMKLERQTIVANPALLKYSFGNRIL 323

Query: 181 PRCNVLEVLYSNGLIGSRNASSITSALKLIEKKFVEK 291
           PRCNVLEVL S  LI  +   +I + LKL EK F+E+
Sbjct: 324 PRCNVLEVLKSKKLI--KGDPNIATLLKLSEKDFMER 358