BLASTX nr result
ID: Coptis21_contig00016877
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis21_contig00016877
(1353 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002281582.2| PREDICTED: pentatricopeptide repeat-containi... 235 2e-59
emb|CAN61515.1| hypothetical protein VITISV_033964 [Vitis vinifera] 234 5e-59
ref|XP_002309567.1| predicted protein [Populus trichocarpa] gi|2... 207 5e-51
ref|XP_003588542.1| Pentatricopeptide repeat-containing protein ... 202 2e-49
ref|XP_002516576.1| pentatricopeptide repeat-containing protein,... 192 2e-46
>ref|XP_002281582.2| PREDICTED: pentatricopeptide repeat-containing protein At5g02860-like
[Vitis vinifera] gi|296081891|emb|CBI20896.3| unnamed
protein product [Vitis vinifera]
Length = 420
Score = 235 bits (599), Expect(2) = 2e-59
Identities = 116/213 (54%), Positives = 154/213 (72%)
Frame = -1
Query: 1317 GFFPTVCTFEYLIAGSTKAQEFDSADKFYEEMLQLGIAPNMCMLQNMLDNTCQQKQYSKV 1138
GF + T+E LI+G +++ FD AD+FYEEM+ GI PN +L+N+L C+Q+ SKV
Sbjct: 206 GFSADLRTYESLISGCVRSRNFDCADRFYEEMMLSGIMPNGQILENILRGLCEQRSISKV 265
Query: 1137 KEFLKFVLDGGSKLSGQMAKKLMEIYSEVWKVEEMEELLLIVTRTNQDLGVLSQVHCGII 958
++ LKF++DG +++ MA+KLM +Y E VE+MEELLL + +NQ VL QVHCGII
Sbjct: 266 EQLLKFMMDGEWEINVSMAEKLMGLYFEHGTVEKMEELLLNLMNSNQSFAVLQQVHCGII 325
Query: 957 MMYALSDRLDDLEFSVGRMLEQGISFTCPDDVEKAICSYFRRATYXXXXXXXXXXXESYR 778
M+A+ DRLDD+E+SVGRML+QG+SF CPDD+EK +C+YFRR Y SY+
Sbjct: 326 RMHAMLDRLDDMEYSVGRMLKQGMSFRCPDDIEKVVCAYFRREAYERLDLFLGHIKGSYK 385
Query: 777 LTRSTYDLLVVGYRRAGMSEKLDLVVKEMILTG 679
LT+STYDLLV GYRRAG+SEKLDLV+ M L G
Sbjct: 386 LTKSTYDLLVAGYRRAGLSEKLDLVMDGMKLAG 418
Score = 22.3 bits (46), Expect(2) = 2e-59
Identities = 9/13 (69%), Positives = 9/13 (69%)
Frame = -2
Query: 1352 AMQVWYLASKIPG 1314
AMQ WYLA K G
Sbjct: 194 AMQAWYLAQKGAG 206
>emb|CAN61515.1| hypothetical protein VITISV_033964 [Vitis vinifera]
Length = 1331
Score = 234 bits (596), Expect(2) = 5e-59
Identities = 115/213 (53%), Positives = 154/213 (72%)
Frame = -1
Query: 1317 GFFPTVCTFEYLIAGSTKAQEFDSADKFYEEMLQLGIAPNMCMLQNMLDNTCQQKQYSKV 1138
GF + T+E LI+G +++ FD AD+FYEEM+ GI P+ +L+N+L C+Q+ SKV
Sbjct: 1117 GFSADLRTYESLISGCXRSRNFDCADRFYEEMMLSGIMPBGQILENILRGLCEQRSISKV 1176
Query: 1137 KEFLKFVLDGGSKLSGQMAKKLMEIYSEVWKVEEMEELLLIVTRTNQDLGVLSQVHCGII 958
++ LKF++DG +++ MA+KLM +Y E VE+MEELLL + +NQ VL QVHCGII
Sbjct: 1177 EQLLKFMMDGEWEINVSMAEKLMGLYFEHGTVEKMEELLLNLMNSNQSFAVLQQVHCGII 1236
Query: 957 MMYALSDRLDDLEFSVGRMLEQGISFTCPDDVEKAICSYFRRATYXXXXXXXXXXXESYR 778
M+A+ DRLDD+E+SVGRML+QG+SF CPDD+EK +C+YFRR Y SY+
Sbjct: 1237 RMHAMLDRLDDMEYSVGRMLKQGMSFRCPDDIEKVVCAYFRREAYERLDLFLGHIKGSYK 1296
Query: 777 LTRSTYDLLVVGYRRAGMSEKLDLVVKEMILTG 679
LT+STYDLLV GYRRAG+SEKLDLV+ M L G
Sbjct: 1297 LTKSTYDLLVAGYRRAGLSEKLDLVMDGMKLAG 1329
Score = 21.9 bits (45), Expect(2) = 5e-59
Identities = 9/13 (69%), Positives = 9/13 (69%)
Frame = -2
Query: 1352 AMQVWYLASKIPG 1314
AMQ WYLA K G
Sbjct: 1105 AMQAWYLAXKGAG 1117
>ref|XP_002309567.1| predicted protein [Populus trichocarpa] gi|222855543|gb|EEE93090.1|
predicted protein [Populus trichocarpa]
Length = 424
Score = 207 bits (527), Expect = 5e-51
Identities = 104/220 (47%), Positives = 151/220 (68%)
Frame = -1
Query: 1335 LGK*DTGFFPTVCTFEYLIAGSTKAQEFDSADKFYEEMLQLGIAPNMCMLQNMLDNTCQQ 1156
+GK GF ++ +E LI+G KA++FD+AD+ YEEM+ LGI P++ +++ +L+ C++
Sbjct: 205 VGKRAAGFSASLQNYECLISGCVKARDFDTADRLYEEMMSLGIMPSLHIMEWVLEGHCKR 264
Query: 1155 KQYSKVKEFLKFVLDGGSKLSGQMAKKLMEIYSEVWKVEEMEELLLIVTRTNQDLGVLSQ 976
KVKEFL F+L+ +++G M + ++ +YSE+ KV+EME LL ++ NQ L Q
Sbjct: 265 GSCDKVKEFLNFLLECKFEINGNMIENVVRLYSELGKVDEMEMLLEMLMEFNQVGEALLQ 324
Query: 975 VHCGIIMMYALSDRLDDLEFSVGRMLEQGISFTCPDDVEKAICSYFRRATYXXXXXXXXX 796
+HCGII YA+ D+LDD+EFSVGRM+ QG+SF P DVEK I SYFR+ Y
Sbjct: 325 LHCGIIRFYAMLDKLDDVEFSVGRMMSQGMSFKSPSDVEKVISSYFRQEAYERLDLFLEH 384
Query: 795 XXESYRLTRSTYDLLVVGYRRAGMSEKLDLVVKEMILTGL 676
Y+LTRSTYDLLV GYRR G+ EKL+L++++M L G+
Sbjct: 385 IKSYYKLTRSTYDLLVAGYRRVGLMEKLNLLMEDMKLAGV 424
>ref|XP_003588542.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355477590|gb|AES58793.1| Pentatricopeptide
repeat-containing protein [Medicago truncatula]
Length = 428
Score = 202 bits (513), Expect = 2e-49
Identities = 105/215 (48%), Positives = 140/215 (65%)
Frame = -1
Query: 1320 TGFFPTVCTFEYLIAGSTKAQEFDSADKFYEEMLQLGIAPNMCMLQNMLDNTCQQKQYSK 1141
TG P + TFE +I+G ++ ++ AD+ +EEM + PN+ +L++ML C QK +
Sbjct: 202 TGLGPDLQTFESVISGCVNSKNYEIADRVFEEMKISEMIPNVTILESMLKGFCSQKSLCR 261
Query: 1140 VKEFLKFVLDGGSKLSGQMAKKLMEIYSEVWKVEEMEELLLIVTRTNQDLGVLSQVHCGI 961
EF KFVLD ++S MA L+ +Y E +VE+MEELL +T D GVLSQ+HCGI
Sbjct: 262 ANEFFKFVLDNRWQISETMAAMLVVLYHEQGQVEKMEELLETITSYPIDSGVLSQIHCGI 321
Query: 960 IMMYALSDRLDDLEFSVGRMLEQGISFTCPDDVEKAICSYFRRATYXXXXXXXXXXXESY 781
+ MYA+ DRLD++E SVGRML+QG+SFT DDVEK ICSYFR+ Y Y
Sbjct: 322 VTMYAMLDRLDEVELSVGRMLKQGMSFTSSDDVEKVICSYFRKEAYDRLDIFLECIKNCY 381
Query: 780 RLTRSTYDLLVVGYRRAGMSEKLDLVVKEMILTGL 676
TRSTYDLL+ GYRRA + EK+DLV+ +M GL
Sbjct: 382 VHTRSTYDLLISGYRRANLHEKVDLVLADMESVGL 416
>ref|XP_002516576.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223544396|gb|EEF45917.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 416
Score = 192 bits (487), Expect = 2e-46
Identities = 95/211 (45%), Positives = 141/211 (66%)
Frame = -1
Query: 1317 GFFPTVCTFEYLIAGSTKAQEFDSADKFYEEMLQLGIAPNMCMLQNMLDNTCQQKQYSKV 1138
G+ V +E LI+ K ++ D AD+ ++EM+ +G+ P+ +L+ +L+ C+++ +V
Sbjct: 204 GYTANVQNYECLISTCVKTKDLDKADRLFDEMMSMGVMPSAAILEWVLEGLCKRRDCDRV 263
Query: 1137 KEFLKFVLDGGSKLSGQMAKKLMEIYSEVWKVEEMEELLLIVTRTNQDLGVLSQVHCGII 958
+ FL F+L+ + +G M +K++E+YSE+ KV+EME+LL I NQ LS++HCGII
Sbjct: 264 RGFLNFLLECRFEFNGNMIEKIVELYSELGKVDEMEKLLDICAEFNQVGETLSRLHCGII 323
Query: 957 MMYALSDRLDDLEFSVGRMLEQGISFTCPDDVEKAICSYFRRATYXXXXXXXXXXXESYR 778
YA +DRLDD+E+SVGRM G+ F PDDVEK I SYFR+ Y ++
Sbjct: 324 RFYAKADRLDDVEYSVGRMTSSGMLFRSPDDVEKVISSYFRKEAYDRLDLFLEHVKGYHK 383
Query: 777 LTRSTYDLLVVGYRRAGMSEKLDLVVKEMIL 685
LTRSTYDLLV GYRRAG++EKL+LV+ +M L
Sbjct: 384 LTRSTYDLLVAGYRRAGLAEKLELVMLDMKL 414