BLASTX nr result

ID: Coptis21_contig00016807 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00016807
         (1206 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002323541.1| predicted protein [Populus trichocarpa] gi|2...   129   1e-27
ref|XP_002453394.1| hypothetical protein SORBIDRAFT_04g005220 [S...    80   1e-12
emb|CBI26021.3| unnamed protein product [Vitis vinifera]               78   4e-12
emb|CAN81149.1| hypothetical protein VITISV_020815 [Vitis vinifera]    78   4e-12
ref|XP_002338928.1| predicted protein [Populus trichocarpa] gi|2...    74   6e-11

>ref|XP_002323541.1| predicted protein [Populus trichocarpa] gi|222868171|gb|EEF05302.1|
           predicted protein [Populus trichocarpa]
          Length = 426

 Score =  129 bits (325), Expect = 1e-27
 Identities = 82/214 (38%), Positives = 127/214 (59%), Gaps = 1/214 (0%)
 Frame = +2

Query: 314 LDRSAFDSLFSGCINLECMRLCECRLPESLFIRGNLLYLKSLVLDRCYGPMEVEVSSIYL 493
           LD+S  D + S C  L  +R+  C LP+ + I G LL LK+L++      + VE+ SI L
Sbjct: 173 LDQSGLDIITSACPKLTLLRMIGCGLPKIVCIHGQLLCLKTLIIHDSL--ISVELKSINL 230

Query: 494 TSFQYIGMTKHLRFVGAVSIEKVHLWFLSPFRRGTYYMFGGLAKELPDLQVLSLVLYTRQ 673
             F++ G  + L FV    ++K  +  L  +RR T  +   LAK+LP LQ LSL++   +
Sbjct: 231 EIFEFFGHPRKLTFVDVPHLKKALVRSLFIYRR-TSPICNALAKDLPQLQFLSLIVKD-E 288

Query: 674 VVPIPANMTKFSHLKELELVVFLSSDFDLLSIASVLNASPCLQKFHLSL-QHGGFRVPRV 850
           V+P+PA   KF  LK+L+L+++   D DLL++  +LNASP L+   L + + G  R    
Sbjct: 289 VLPLPATSPKFISLKQLDLLIWPFIDSDLLTVIYLLNASPLLEILQLKIGRQGEGRSNGE 348

Query: 851 ERDYSKQLYYQLKEVEISGFHDRCDSFELAIHLL 952
            R+YS+  +  LKEV++ GF D+ ++ ELAI+LL
Sbjct: 349 RREYSRHTHSHLKEVKMEGFRDKWNAMELAIYLL 382



 Score = 80.9 bits (198), Expect = 6e-13
 Identities = 35/54 (64%), Positives = 40/54 (74%)
 Frame = +3

Query: 3   DRWISFALRMQVEKIDLEFSCIPGGCENYKFPCHLLPHGKASHLKHLSLQSCVL 164
           DRW+SF+  MQVEKI  +FSC P  C +Y FPCH+LP  KASHLKHL L SC L
Sbjct: 97  DRWVSFSSAMQVEKIAFDFSCSPKSCGSYNFPCHILPADKASHLKHLCLVSCTL 150


>ref|XP_002453394.1| hypothetical protein SORBIDRAFT_04g005220 [Sorghum bicolor]
           gi|241933225|gb|EES06370.1| hypothetical protein
           SORBIDRAFT_04g005220 [Sorghum bicolor]
          Length = 494

 Score = 79.7 bits (195), Expect = 1e-12
 Identities = 63/214 (29%), Positives = 102/214 (47%), Gaps = 9/214 (4%)
 Frame = +2

Query: 338 LFSGCINLECMRLCECRLPESLFIRGNLLYLKSLVLDRCYGPMEVEVSSIYLTSFQYIGM 517
           + S C  LE + +  C +  S+ +   L  L  LV+D C    E+E++   LT+FQY G 
Sbjct: 197 ILSTCNLLEFLEISYCSMVTSIRMLHPLDRLMHLVVDICRKLQEIELNCS-LTTFQYSGR 255

Query: 518 TKHLRFVGAVSIEKVHLWFLSPFRRGTYYMFGGLAKELPDLQVLSLVLYTRQVVPIPANM 697
           T  L+F     +  +++ FL+  +    YM  G     P L+ L+L  Y  +   +P   
Sbjct: 256 TVPLKFASTSRLTNINVVFLTD-QSALSYMVTGFPSTSPRLETLTLYCYEHERTLVPEGP 314

Query: 698 TKFSHLKELEL-VVFLSS---DFDLLSIASVLNASPCLQKFHLSLQHGGFRVPRVERDYS 865
            KF+ L++L L +VF      + D+L  A +L  +P ++K  L +       P  + D  
Sbjct: 315 FKFTCLRDLRLDLVFAGKGTRNVDVLDYAYLLEIAPFMEKMELRMWIRWHHQPYCKEDGE 374

Query: 866 KQL-----YYQLKEVEISGFHDRCDSFELAIHLL 952
            ++     +  LK V ISGF    D  ELA+H+L
Sbjct: 375 LRIGLPHQHAHLKYVRISGFFGHKDQVELALHIL 408


>emb|CBI26021.3| unnamed protein product [Vitis vinifera]
          Length = 487

 Score = 78.2 bits (191), Expect = 4e-12
 Identities = 62/212 (29%), Positives = 98/212 (46%), Gaps = 6/212 (2%)
 Frame = +2

Query: 338 LFSGCINLECMRLCECRLPESLFIRGNLLYLKSLVLDRCYGPMEVEVSSIYLTSFQYIGM 517
           L S C +LE + LC C    +L      L LK L +  C+    +E+ +  L +F+Y G 
Sbjct: 221 LLSTCSHLEWLSLCVCNGLVNLSFSALNLQLKFLSIKNCFRLETIEIHAADLVTFKYGGH 280

Query: 518 TKHLRFVGAVSIEKVHLWFL--SPFRRGTYYMFGGLAKELPDLQVLSLV-LYTRQVVPIP 688
                F     + K  L F   S    G  Y      ++LP L+ L L+ + T + + +P
Sbjct: 281 LPSFSFKNVPKLAKASLEFFIKSSRTEGVMYALTRFPQDLPQLETLKLLSVLTLKKLQLP 340

Query: 689 ANMTKFSHLKELELVVF-LSSDFDLLSIASVLNASPCLQKFHLSLQHGGF--RVPRVERD 859
            N   F+++K+ EL VF    D DL  I  +L A P LQK  L+L    F  +   +ER 
Sbjct: 341 ENGPTFTNVKQFELTVFPFDDDDDLSWIGYILKAFPLLQKLELNLFSPSFTKQPKEIERF 400

Query: 860 YSKQLYYQLKEVEISGFHDRCDSFELAIHLLN 955
             +  +  L  ++I+GF+      +L  +LL+
Sbjct: 401 LPECPHRHLSILQINGFYGNQHEVDLLKYLLH 432


>emb|CAN81149.1| hypothetical protein VITISV_020815 [Vitis vinifera]
          Length = 1789

 Score = 78.2 bits (191), Expect = 4e-12
 Identities = 62/212 (29%), Positives = 98/212 (46%), Gaps = 6/212 (2%)
 Frame = +2

Query: 338  LFSGCINLECMRLCECRLPESLFIRGNLLYLKSLVLDRCYGPMEVEVSSIYLTSFQYIGM 517
            L S C +LE + LC C    +L      L LK L +  C+    +E+ +  L +F+Y G 
Sbjct: 1523 LLSTCSHLERLSLCVCNGLVNLSFSALNLQLKFLSIKNCFRLETIEIHAADLVTFKYGGH 1582

Query: 518  TKHLRFVGAVSIEKVHLWFL--SPFRRGTYYMFGGLAKELPDLQVLSLV-LYTRQVVPIP 688
                 F     + K  L F   S    G  Y      ++LP L+ L L+ + T + + +P
Sbjct: 1583 LPSFSFKNVPKLAKASLEFFIKSSRTEGVMYALTRFPQDLPQLETLKLLSVLTLKKLQLP 1642

Query: 689  ANMTKFSHLKELELVVF-LSSDFDLLSIASVLNASPCLQKFHLSLQHGGF--RVPRVERD 859
             N   F+++K+ EL VF    D DL  I  +L A P LQK  L+L    F  +   +ER 
Sbjct: 1643 ENGPTFTNIKQFELTVFPFDDDDDLSWIGYILKAFPLLQKLELNLFSPSFTKQPKEIERF 1702

Query: 860  YSKQLYYQLKEVEISGFHDRCDSFELAIHLLN 955
              +  +  L  ++I+GF+      +L  +LL+
Sbjct: 1703 LPECPHRHLSILQINGFYGNQHEVDLLKYLLH 1734


>ref|XP_002338928.1| predicted protein [Populus trichocarpa] gi|222873948|gb|EEF11079.1|
           predicted protein [Populus trichocarpa]
          Length = 138

 Score = 74.3 bits (181), Expect = 6e-11
 Identities = 40/94 (42%), Positives = 61/94 (64%), Gaps = 1/94 (1%)
 Frame = +2

Query: 674 VVPIPANMTKFSHLKELELVVFLSSDFDLLSIASVLNASPCLQKFHLSLQH-GGFRVPRV 850
           V+P+PA   KF  LK+L+L+++   D DLL++  +LNASP L+   L + H G  R    
Sbjct: 1   VLPLPATSPKFISLKQLDLLIWPFIDSDLLTVIYLLNASPLLEILQLKIGHQGEGRSNGE 60

Query: 851 ERDYSKQLYYQLKEVEISGFHDRCDSFELAIHLL 952
            R+YS+  +  LKEV++ GF D+ ++ ELAI+LL
Sbjct: 61  RREYSRHTHSHLKEVKMEGFRDKWNAMELAIYLL 94


Top