BLASTX nr result
ID: Coptis21_contig00016777
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis21_contig00016777
(1100 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002270244.2| PREDICTED: RNA-binding protein 40-like [Viti... 245 2e-62
ref|XP_003632078.1| PREDICTED: LOW QUALITY PROTEIN: RNA-binding ... 241 2e-61
emb|CBI36672.3| unnamed protein product [Vitis vinifera] 241 2e-61
emb|CAN75157.1| hypothetical protein VITISV_042644 [Vitis vinifera] 241 2e-61
ref|XP_002525464.1| RNA binding protein, putative [Ricinus commu... 232 1e-58
>ref|XP_002270244.2| PREDICTED: RNA-binding protein 40-like [Vitis vinifera]
gi|298205172|emb|CBI17231.3| unnamed protein product
[Vitis vinifera]
Length = 463
Score = 245 bits (625), Expect = 2e-62
Identities = 122/169 (72%), Positives = 145/169 (85%)
Frame = -2
Query: 562 EAIVGPAVNKDVAHEDVGLKPATLAPKEMPMIKKNNPVLQIKLAAKPIHNEDKYDVDNMN 383
EAIVGP V+KDVAHE VG+KPATL PKE+PMIKK NPVLQIK+ K I E K + M
Sbjct: 269 EAIVGPGVDKDVAHEAVGVKPATLVPKEIPMIKKKNPVLQIKIVPKVI-TEHKDECSIMK 327
Query: 382 KSEEAGKEGMELKPFATTEDIERGKLPPEEILSLPMFKNYSAGSSATVLYIKNLSKDVIT 203
+SE++ KE +LKP+AT E+++ GKLPPEEILSLPMFKNY+AG+ A VLYIKNL+KDV+
Sbjct: 328 ESEDSEKEDFDLKPYATLEELKSGKLPPEEILSLPMFKNYTAGNPAPVLYIKNLAKDVVV 387
Query: 202 DDFYFIFGSLFGTLEAAKSGLSIKLMQEGRMRGQAFVTFPSVDLSHRAL 56
DDFYFIFGSLFG+++AAKSGLS+KLMQEGRMRGQAFVTFPSV+L+H AL
Sbjct: 388 DDFYFIFGSLFGSVDAAKSGLSVKLMQEGRMRGQAFVTFPSVELAHHAL 436
Score = 130 bits (328), Expect = 4e-28
Identities = 71/122 (58%), Positives = 81/122 (66%), Gaps = 11/122 (9%)
Frame = -2
Query: 1099 RFLGKVLLVERATTNPPLLNNQQQHSXXXXXXXAN-----------KDSTSSLLNHPDTD 953
RFLGKVLLVERA N P +++Q+ +D L +
Sbjct: 82 RFLGKVLLVERA--NKPTEDDKQKSEALFGKDLTKPVSLIKDFTMARDLDEGLKSSSLPA 139
Query: 952 AQPIAPSLGIQYPYPPHLQYAYPPPDGNILTNIVNALIAVPRFYTQVLHLMNKMNIPAPF 773
++PIA LGI YP+PPHL+YAYPPPDGNILTNIVNALIAVPRFY QVLHLMNKMNIPAPF
Sbjct: 140 SEPIAARLGIDYPFPPHLEYAYPPPDGNILTNIVNALIAVPRFYVQVLHLMNKMNIPAPF 199
Query: 772 RM 767
RM
Sbjct: 200 RM 201
>ref|XP_003632078.1| PREDICTED: LOW QUALITY PROTEIN: RNA-binding protein 40-like [Vitis
vinifera]
Length = 463
Score = 241 bits (616), Expect = 2e-61
Identities = 121/169 (71%), Positives = 144/169 (85%)
Frame = -2
Query: 562 EAIVGPAVNKDVAHEDVGLKPATLAPKEMPMIKKNNPVLQIKLAAKPIHNEDKYDVDNMN 383
EAI GP V+KDVAHE VG+KPATL PKE+PMIKK NPVLQIK+A K I E K + M
Sbjct: 269 EAIAGPGVDKDVAHEAVGVKPATLVPKEIPMIKKKNPVLQIKIAPKVI-TEHKDECSIMK 327
Query: 382 KSEEAGKEGMELKPFATTEDIERGKLPPEEILSLPMFKNYSAGSSATVLYIKNLSKDVIT 203
+SE++ KE +LK +AT E+++ GKLPPEEILSLPMFKNY+AG+ A VLYIKNL+KDV+
Sbjct: 328 ESEDSEKEDFDLKHYATLEELKSGKLPPEEILSLPMFKNYAAGNPAPVLYIKNLAKDVVV 387
Query: 202 DDFYFIFGSLFGTLEAAKSGLSIKLMQEGRMRGQAFVTFPSVDLSHRAL 56
DDFYFIFGSLFG+++AAKSGLS+KLMQEGRMRGQAFVTFPSV+L+H AL
Sbjct: 388 DDFYFIFGSLFGSVDAAKSGLSVKLMQEGRMRGQAFVTFPSVELAHHAL 436
Score = 119 bits (298), Expect = 1e-24
Identities = 67/122 (54%), Positives = 77/122 (63%), Gaps = 11/122 (9%)
Frame = -2
Query: 1099 RFLGKVLLVERATTNPPLLNNQQQHSXXXXXXXAN-----------KDSTSSLLNHPDTD 953
RFLGKVLLVERA N P +++Q+ +D L +
Sbjct: 82 RFLGKVLLVERA--NKPTEDDKQKSEALFGKDLTKPASLIKDFTMARDLGEGLKSSSLPA 139
Query: 952 AQPIAPSLGIQYPYPPHLQYAYPPPDGNILTNIVNALIAVPRFYTQVLHLMNKMNIPAPF 773
++PIA LGI YP+PPHL+Y PDGNILTNIVNALIAVPRFY QVLHLMNKMNIPAPF
Sbjct: 140 SEPIAARLGIDYPFPPHLEYVXSHPDGNILTNIVNALIAVPRFYVQVLHLMNKMNIPAPF 199
Query: 772 RM 767
RM
Sbjct: 200 RM 201
>emb|CBI36672.3| unnamed protein product [Vitis vinifera]
Length = 263
Score = 241 bits (616), Expect = 2e-61
Identities = 121/169 (71%), Positives = 144/169 (85%)
Frame = -2
Query: 562 EAIVGPAVNKDVAHEDVGLKPATLAPKEMPMIKKNNPVLQIKLAAKPIHNEDKYDVDNMN 383
EAI GP V+KDVAHE VG+KPATL PKE+PMIKK NPVLQIK+A K I E K + M
Sbjct: 69 EAIAGPGVDKDVAHEAVGVKPATLVPKEIPMIKKKNPVLQIKIAPKVI-TEHKDECSIMK 127
Query: 382 KSEEAGKEGMELKPFATTEDIERGKLPPEEILSLPMFKNYSAGSSATVLYIKNLSKDVIT 203
+SE++ KE +LK +AT E+++ GKLPPEEILSLPMFKNY+AG+ A VLYIKNL+KDV+
Sbjct: 128 ESEDSEKEDFDLKHYATLEELKSGKLPPEEILSLPMFKNYAAGNPAPVLYIKNLAKDVVV 187
Query: 202 DDFYFIFGSLFGTLEAAKSGLSIKLMQEGRMRGQAFVTFPSVDLSHRAL 56
DDFYFIFGSLFG+++AAKSGLS+KLMQEGRMRGQAFVTFPSV+L+H AL
Sbjct: 188 DDFYFIFGSLFGSVDAAKSGLSVKLMQEGRMRGQAFVTFPSVELAHHAL 236
>emb|CAN75157.1| hypothetical protein VITISV_042644 [Vitis vinifera]
Length = 408
Score = 241 bits (616), Expect = 2e-61
Identities = 121/169 (71%), Positives = 144/169 (85%)
Frame = -2
Query: 562 EAIVGPAVNKDVAHEDVGLKPATLAPKEMPMIKKNNPVLQIKLAAKPIHNEDKYDVDNMN 383
EAI GP V+KDVAHE VG+KPATL PKE+PMIKK NPVLQIK+A K I E K + M
Sbjct: 77 EAIAGPGVDKDVAHEAVGVKPATLVPKEIPMIKKKNPVLQIKIAPKVI-TEHKDECSIMK 135
Query: 382 KSEEAGKEGMELKPFATTEDIERGKLPPEEILSLPMFKNYSAGSSATVLYIKNLSKDVIT 203
+SE++ KE +LK +AT E+++ GKLPPEEILSLPMFKNY+AG+ A VLYIKNL+KDV+
Sbjct: 136 ESEDSEKEDFDLKHYATLEELKSGKLPPEEILSLPMFKNYAAGNPAPVLYIKNLAKDVVV 195
Query: 202 DDFYFIFGSLFGTLEAAKSGLSIKLMQEGRMRGQAFVTFPSVDLSHRAL 56
DDFYFIFGSLFG+++AAKSGLS+KLMQEGRMRGQAFVTFPSV+L+H AL
Sbjct: 196 DDFYFIFGSLFGSVDAAKSGLSVKLMQEGRMRGQAFVTFPSVELAHHAL 244
>ref|XP_002525464.1| RNA binding protein, putative [Ricinus communis]
gi|223535277|gb|EEF36954.1| RNA binding protein,
putative [Ricinus communis]
Length = 450
Score = 232 bits (592), Expect = 1e-58
Identities = 114/169 (67%), Positives = 142/169 (84%)
Frame = -2
Query: 562 EAIVGPAVNKDVAHEDVGLKPATLAPKEMPMIKKNNPVLQIKLAAKPIHNEDKYDVDNMN 383
EAIVGP V+KDV HE VGLKP++L PKE+P+IKK NPVLQIK+A K E D+ +M
Sbjct: 256 EAIVGPGVDKDVVHEAVGLKPSSLVPKEIPVIKKKNPVLQIKIAPKVSQTEQTDDI-SMK 314
Query: 382 KSEEAGKEGMELKPFATTEDIERGKLPPEEILSLPMFKNYSAGSSATVLYIKNLSKDVIT 203
+S+E +EG++ KPFAT E++E KL PEEILSLP FKNY+ G+ A+VLYIKNLSKD++
Sbjct: 315 ESDEQDEEGLDHKPFATPEELESNKLAPEEILSLPQFKNYTVGNPASVLYIKNLSKDMVA 374
Query: 202 DDFYFIFGSLFGTLEAAKSGLSIKLMQEGRMRGQAFVTFPSVDLSHRAL 56
DDF++IFGSLFG+L+AAK GLS+KLMQEGRMRGQAFVTFPSV+L+H+AL
Sbjct: 375 DDFFYIFGSLFGSLDAAKVGLSVKLMQEGRMRGQAFVTFPSVELAHQAL 423
Score = 137 bits (345), Expect = 5e-30
Identities = 73/125 (58%), Positives = 84/125 (67%), Gaps = 14/125 (11%)
Frame = -2
Query: 1099 RFLGKVLLVERATTNPPLLNN------QQQHSXXXXXXXANKDSTSSLLNHPDTD----- 953
RFLGKVL E+A N P NN Q +KD+++ + DTD
Sbjct: 70 RFLGKVLAAEKANNNKPNENNVLTQSEAQIRKDHTLPTSVDKDASAMI----DTDGRSKS 125
Query: 952 ---AQPIAPSLGIQYPYPPHLQYAYPPPDGNILTNIVNALIAVPRFYTQVLHLMNKMNIP 782
++PIAP LG+ YP+PPHL+Y YPPPDGNILTNIVNALIAVPRFYTQVLHLMNKMNIP
Sbjct: 126 VPASEPIAPRLGVDYPFPPHLEYTYPPPDGNILTNIVNALIAVPRFYTQVLHLMNKMNIP 185
Query: 781 APFRM 767
APFRM
Sbjct: 186 APFRM 190