BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00016758
         (1290 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_001063775.1| Os09g0534800 [Oryza sativa Japonica Group] g...   570   e-160
dbj|BAK05040.1| predicted protein [Hordeum vulgare subsp. vulgare]    570   e-160
ref|XP_003578512.1| PREDICTED: transcription initiation factor I...   570   e-160
ref|XP_002460572.1| hypothetical protein SORBIDRAFT_02g031020 [S...   568   e-159
ref|NP_001149721.1| transcription initiation factor IIB [Zea may...   562   e-158

>ref|NP_001063775.1| Os09g0534800 [Oryza sativa Japonica Group]
            gi|21362998|sp|Q8W0W3.1|TF2B_ORYSJ RecName:
            Full=Transcription initiation factor IIB; AltName:
            Full=General transcription factor TFIIB
            gi|18481632|gb|AAL73491.1|AF464908_1 general
            transcription factor TFIIB [Oryza sativa]
            gi|50725809|dbj|BAD33339.1| Transcription initiation
            factor IIB [Oryza sativa Japonica Group]
            gi|50726577|dbj|BAD34211.1| Transcription initiation
            factor IIB [Oryza sativa Japonica Group]
            gi|113632008|dbj|BAF25689.1| Os09g0534800 [Oryza sativa
            Japonica Group] gi|125564497|gb|EAZ09877.1| hypothetical
            protein OsI_32170 [Oryza sativa Indica Group]
            gi|125606444|gb|EAZ45480.1| hypothetical protein
            OsJ_30135 [Oryza sativa Japonica Group]
            gi|347737122|gb|AEP20532.1| transcription factor [Oryza
            sativa Japonica Group]
          Length = 312

 Score =  570 bits (1469), Expect = e-160
 Identities = 281/310 (90%), Positives = 298/310 (96%)
 Frame = +3

Query: 108  MADMFCPECKKSTEVVLDHSAGDTVCFECGLVLEAHSIDETSEWRTFANESGENDPVRVG 287
            M+D FCP+CKK TEV  DHSAGDTVC ECGLVLEAHS+DETSEWRTFANES +NDPVRVG
Sbjct: 1    MSDSFCPDCKKHTEVAFDHSAGDTVCTECGLVLEAHSVDETSEWRTFANESSDNDPVRVG 60

Query: 288  GPSNPLLTDGGLSTVISKPNGASGDFLSSSLGRWQNRGSNPDRSLIQAFKTIAIMCDRLG 467
            GP+NPLLTDGGLSTVI+KPNGA G+FLSSSLGRWQNRGSNPDRSLI AF+TIA M DRLG
Sbjct: 61   GPTNPLLTDGGLSTVIAKPNGAQGEFLSSSLGRWQNRGSNPDRSLILAFRTIANMADRLG 120

Query: 468  LVATIKDRANEIYKKVEDLKSIRGRNQDAILAACLYIACRQEDRPRTVKEICSVANGATK 647
            LVATIKDRANEIYKKVEDLKSIRGRNQDAILAACLYIACRQEDRPRTVKEICSVANGATK
Sbjct: 121  LVATIKDRANEIYKKVEDLKSIRGRNQDAILAACLYIACRQEDRPRTVKEICSVANGATK 180

Query: 648  KEVGRAKEFIVKQLEVEMGQSMEMGTIHAGDFLRRFCSHLGMNNAAIKAAQEAVQKSEEL 827
            KE+GRAKEFIVKQLEVEMGQSMEMGTIHAGDFLRRFCS LGMNN A+KAAQEAVQ+SEEL
Sbjct: 181  KEIGRAKEFIVKQLEVEMGQSMEMGTIHAGDFLRRFCSTLGMNNQAVKAAQEAVQRSEEL 240

Query: 828  DIRRSPISIAAAVIYMITQLSDEKKPLRDISLATGVAEGTIRNSYKDLYPYASRLIPSSF 1007
            DIRRSPISIAAAVIYMITQLSD+KKPL+DISLATGVAEGTIRNSYKDLYPYASRLIP+++
Sbjct: 241  DIRRSPISIAAAVIYMITQLSDDKKPLKDISLATGVAEGTIRNSYKDLYPYASRLIPNTY 300

Query: 1008 AKEEDLRNLC 1037
            AKEEDL+NLC
Sbjct: 301  AKEEDLKNLC 310


>dbj|BAK05040.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 312

 Score =  570 bits (1469), Expect = e-160
 Identities = 281/310 (90%), Positives = 298/310 (96%)
 Frame = +3

Query: 108  MADMFCPECKKSTEVVLDHSAGDTVCFECGLVLEAHSIDETSEWRTFANESGENDPVRVG 287
            M+D +CP+CKK TEV  DHSAGDTVC ECGLVLEAHS+DETSEWRTFANES +NDPVRVG
Sbjct: 1    MSDTYCPDCKKHTEVAFDHSAGDTVCTECGLVLEAHSVDETSEWRTFANESNDNDPVRVG 60

Query: 288  GPSNPLLTDGGLSTVISKPNGASGDFLSSSLGRWQNRGSNPDRSLIQAFKTIAIMCDRLG 467
            GPSNPLLTDGGLSTVI+KPNGA GDFLSSSLGRWQNRGSNPDRSLI AF+TIA M DRLG
Sbjct: 61   GPSNPLLTDGGLSTVIAKPNGAHGDFLSSSLGRWQNRGSNPDRSLILAFRTIANMADRLG 120

Query: 468  LVATIKDRANEIYKKVEDLKSIRGRNQDAILAACLYIACRQEDRPRTVKEICSVANGATK 647
            LVATIKDRANEIYKKVEDLKSIRGRNQDAILAACLYIACRQEDRPRTVKEICSVANGATK
Sbjct: 121  LVATIKDRANEIYKKVEDLKSIRGRNQDAILAACLYIACRQEDRPRTVKEICSVANGATK 180

Query: 648  KEVGRAKEFIVKQLEVEMGQSMEMGTIHAGDFLRRFCSHLGMNNAAIKAAQEAVQKSEEL 827
            KE+GRAKEFIVKQLEVEMGQSMEMGTIHAGDFLRRFCS LGMNN A+KAAQEAVQ+SEEL
Sbjct: 181  KEIGRAKEFIVKQLEVEMGQSMEMGTIHAGDFLRRFCSTLGMNNTAVKAAQEAVQRSEEL 240

Query: 828  DIRRSPISIAAAVIYMITQLSDEKKPLRDISLATGVAEGTIRNSYKDLYPYASRLIPSSF 1007
            DIRRSPISIAAAVIYMITQLS++KKPL+DISLATGVAEGTIRNSYKDLYPYA+RLIP+S+
Sbjct: 241  DIRRSPISIAAAVIYMITQLSEDKKPLKDISLATGVAEGTIRNSYKDLYPYAARLIPNSY 300

Query: 1008 AKEEDLRNLC 1037
            AKEEDL+NLC
Sbjct: 301  AKEEDLKNLC 310


>ref|XP_003578512.1| PREDICTED: transcription initiation factor IIB-like [Brachypodium
            distachyon]
          Length = 312

 Score =  570 bits (1468), Expect = e-160
 Identities = 281/310 (90%), Positives = 298/310 (96%)
 Frame = +3

Query: 108  MADMFCPECKKSTEVVLDHSAGDTVCFECGLVLEAHSIDETSEWRTFANESGENDPVRVG 287
            M+D FCP+CKK TEV  DHSAGDTVC ECGLVLEAHS+DETSEWRTFANES +NDPVRVG
Sbjct: 1    MSDTFCPDCKKHTEVAFDHSAGDTVCTECGLVLEAHSVDETSEWRTFANESNDNDPVRVG 60

Query: 288  GPSNPLLTDGGLSTVISKPNGASGDFLSSSLGRWQNRGSNPDRSLIQAFKTIAIMCDRLG 467
            GPSNPLLTDGGLSTVI+KPNGA G+FLSSSLGRWQNRGSNPDRSLI AF+TIA M DRLG
Sbjct: 61   GPSNPLLTDGGLSTVIAKPNGAHGEFLSSSLGRWQNRGSNPDRSLILAFRTIANMADRLG 120

Query: 468  LVATIKDRANEIYKKVEDLKSIRGRNQDAILAACLYIACRQEDRPRTVKEICSVANGATK 647
            LVATIKDRANEIYKKVEDLKSIRGRNQDAILAACLYIACRQEDRPRTVKEICSVANGATK
Sbjct: 121  LVATIKDRANEIYKKVEDLKSIRGRNQDAILAACLYIACRQEDRPRTVKEICSVANGATK 180

Query: 648  KEVGRAKEFIVKQLEVEMGQSMEMGTIHAGDFLRRFCSHLGMNNAAIKAAQEAVQKSEEL 827
            KE+GRAKEFIVKQLEVEMGQSMEMGTIHAGDFLRRFCS LGMNN A+KAAQEAVQ+SEEL
Sbjct: 181  KEIGRAKEFIVKQLEVEMGQSMEMGTIHAGDFLRRFCSTLGMNNTAVKAAQEAVQRSEEL 240

Query: 828  DIRRSPISIAAAVIYMITQLSDEKKPLRDISLATGVAEGTIRNSYKDLYPYASRLIPSSF 1007
            DIRRSPISIAAAVIYMITQLS++KKPL+DISLATGVAEGTIRNSYKDLYPYASRLIP+++
Sbjct: 241  DIRRSPISIAAAVIYMITQLSEDKKPLKDISLATGVAEGTIRNSYKDLYPYASRLIPNTY 300

Query: 1008 AKEEDLRNLC 1037
            AKEEDL+NLC
Sbjct: 301  AKEEDLKNLC 310


>ref|XP_002460572.1| hypothetical protein SORBIDRAFT_02g031020 [Sorghum bicolor]
            gi|241923949|gb|EER97093.1| hypothetical protein
            SORBIDRAFT_02g031020 [Sorghum bicolor]
          Length = 312

 Score =  568 bits (1463), Expect = e-159
 Identities = 279/310 (90%), Positives = 298/310 (96%)
 Frame = +3

Query: 108  MADMFCPECKKSTEVVLDHSAGDTVCFECGLVLEAHSIDETSEWRTFANESGENDPVRVG 287
            M+D FCP+CKK TEV  DHSAGDTVC ECGLVLEAHS+DETSEWRTFANES +NDPVRVG
Sbjct: 1    MSDSFCPDCKKQTEVAFDHSAGDTVCTECGLVLEAHSVDETSEWRTFANESNDNDPVRVG 60

Query: 288  GPSNPLLTDGGLSTVISKPNGASGDFLSSSLGRWQNRGSNPDRSLIQAFKTIAIMCDRLG 467
            GP+NPLLTDGGLSTVI+KPNGA G+FLSSSLGRWQNRGSNPDRSLI AF+TIA M DRLG
Sbjct: 61   GPTNPLLTDGGLSTVIAKPNGAQGEFLSSSLGRWQNRGSNPDRSLILAFRTIANMADRLG 120

Query: 468  LVATIKDRANEIYKKVEDLKSIRGRNQDAILAACLYIACRQEDRPRTVKEICSVANGATK 647
            LVATIKDRANEIYKKVEDLKSIRGRNQDAILAACLYIACRQEDRPRTVKEICSVANGATK
Sbjct: 121  LVATIKDRANEIYKKVEDLKSIRGRNQDAILAACLYIACRQEDRPRTVKEICSVANGATK 180

Query: 648  KEVGRAKEFIVKQLEVEMGQSMEMGTIHAGDFLRRFCSHLGMNNAAIKAAQEAVQKSEEL 827
            KE+GRAKEFIVKQLEVEMGQSMEMGTIHAGDFLRRFCS LGMNN A+KAAQEAVQ+SEEL
Sbjct: 181  KEIGRAKEFIVKQLEVEMGQSMEMGTIHAGDFLRRFCSTLGMNNQAVKAAQEAVQRSEEL 240

Query: 828  DIRRSPISIAAAVIYMITQLSDEKKPLRDISLATGVAEGTIRNSYKDLYPYASRLIPSSF 1007
            DIRRSPISIAAAVIYMITQLS++KKPL+DISLATGVAEGTIRNSYKDLYPYA+RLIP+++
Sbjct: 241  DIRRSPISIAAAVIYMITQLSEDKKPLKDISLATGVAEGTIRNSYKDLYPYAARLIPNTY 300

Query: 1008 AKEEDLRNLC 1037
            AKEEDL+NLC
Sbjct: 301  AKEEDLKNLC 310


>ref|NP_001149721.1| transcription initiation factor IIB [Zea mays]
            gi|195629762|gb|ACG36522.1| transcription initiation
            factor IIB [Zea mays] gi|414590059|tpg|DAA40630.1| TPA:
            transcription initiation factor IIB [Zea mays]
          Length = 312

 Score =  562 bits (1449), Expect = e-158
 Identities = 276/310 (89%), Positives = 296/310 (95%)
 Frame = +3

Query: 108  MADMFCPECKKSTEVVLDHSAGDTVCFECGLVLEAHSIDETSEWRTFANESGENDPVRVG 287
            M+D +CP+CKK TEV  DHSAGDTVC ECGLVLEAHS+DETSEWRTFANES +NDPVRVG
Sbjct: 1    MSDSYCPDCKKHTEVAFDHSAGDTVCTECGLVLEAHSVDETSEWRTFANESNDNDPVRVG 60

Query: 288  GPSNPLLTDGGLSTVISKPNGASGDFLSSSLGRWQNRGSNPDRSLIQAFKTIAIMCDRLG 467
            GPSNPLLTDGGLSTVI+KPNGA GDFLSSSLGRWQNRGSNPDRSLI AF+TIA M DRLG
Sbjct: 61   GPSNPLLTDGGLSTVIAKPNGAQGDFLSSSLGRWQNRGSNPDRSLILAFRTIANMADRLG 120

Query: 468  LVATIKDRANEIYKKVEDLKSIRGRNQDAILAACLYIACRQEDRPRTVKEICSVANGATK 647
            LVATIKDRANEI+KK+EDLKSIRGRNQDAILAACLYIACRQEDRPRTVKEICSVANGATK
Sbjct: 121  LVATIKDRANEIFKKIEDLKSIRGRNQDAILAACLYIACRQEDRPRTVKEICSVANGATK 180

Query: 648  KEVGRAKEFIVKQLEVEMGQSMEMGTIHAGDFLRRFCSHLGMNNAAIKAAQEAVQKSEEL 827
            KE+GRAKEFIVKQLEVEMGQSMEMGTIHAGDFLRRFCS LGM N A+ AA+EAVQ+SEEL
Sbjct: 181  KEIGRAKEFIVKQLEVEMGQSMEMGTIHAGDFLRRFCSTLGMTNQAVNAAKEAVQRSEEL 240

Query: 828  DIRRSPISIAAAVIYMITQLSDEKKPLRDISLATGVAEGTIRNSYKDLYPYASRLIPSSF 1007
            DIRRSPISIAAAVIYMITQLS++KKPL+DISLATGVAEGTIRNSYKDLYPYASRLIP+++
Sbjct: 241  DIRRSPISIAAAVIYMITQLSEDKKPLKDISLATGVAEGTIRNSYKDLYPYASRLIPNTY 300

Query: 1008 AKEEDLRNLC 1037
            AKEEDL+NLC
Sbjct: 301  AKEEDLKNLC 310