BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00016564
         (627 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003633340.1| PREDICTED: pentatricopeptide repeat-containi...   166   3e-39
ref|XP_002533966.1| pentatricopeptide repeat-containing protein,...   155   7e-36
ref|XP_004137583.1| PREDICTED: pentatricopeptide repeat-containi...   154   1e-35
emb|CBI22243.3| unnamed protein product [Vitis vinifera]              153   3e-35
ref|XP_002283796.1| PREDICTED: pentatricopeptide repeat-containi...   153   3e-35

>ref|XP_003633340.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 679

 Score =  166 bits (420), Expect = 3e-39
 Identities = 78/187 (41%), Positives = 118/187 (63%)
 Frame = +2

Query: 65  NTMNYARHLFDKLHHPKLFFYNAMIKGYSLNDFHQDALTLYTLMRYRSVACDSFTFPVVL 244
           N + YAR +FD++    L  +N +IK Y  N F  D + L+  + +  +  D+FT P V+
Sbjct: 61  NDLGYARSIFDRIQRRSLIHWNTIIKCYVENQFSHDGIVLFHELVHEYLP-DNFTLPCVI 119

Query: 245 RSVSTLGKIHIGKELHGLVLKMGCAERLIVQTALIDMYCACGLSSYGRWVFDKIVDKDVI 424
           +  + LG +  GK++HGL LK+G    + VQ +L++MY  CG     R VFD ++DKDV+
Sbjct: 120 KGCARLGVVQEGKQIHGLALKIGFGSDVFVQGSLVNMYSKCGEIDCARKVFDGMIDKDVV 179

Query: 425 CWNTMIAGYIKCGEHGYAKEVFELMPVRNVSSWNTIVDMYCKCGDMEMARKLFEDMPEKD 604
            WN++I GY +CGE   A ++FE MP R+  SW  +VD   KCG +E ARKLF+ MP ++
Sbjct: 180 LWNSLIDGYARCGEIDIALQLFEEMPERDAFSWTVLVDGLSKCGKVESARKLFDQMPCRN 239

Query: 605 VISWNAL 625
           ++SWNA+
Sbjct: 240 LVSWNAM 246



 Score = 60.1 bits (144), Expect = 3e-07
 Identities = 58/232 (25%), Positives = 90/232 (38%), Gaps = 44/232 (18%)
 Frame = +2

Query: 62  SNTMNYARHLFDKLHHPKLFFYNAMIKGYSLNDFHQDALTLYTLMRYRSVACDSFTFPVV 241
           S   + A  LF ++    L  +N MI GY LN    DA+ ++ +M          T   V
Sbjct: 253 SGDFDSALELFYQMPIWDLVTWNLMIAGYELNGQFMDAVKMFFMMLKLGSRPSHATLVSV 312

Query: 242 LRSVSTLGKIHIGKELHGLVLKMGCAERLIVQTALIDMYCACGLSSYGRWVFDKIVDKDV 421
           L +VS L  +  G+ +H  + K G     I+ T+LI+MY  CG       VF  I  K V
Sbjct: 313 LSAVSGLAVLGKGRWIHSYMEKNGFELDGILGTSLIEMYAKCGCIESALTVFRAIQKKKV 372

Query: 422 ICWNTMIAGYIKCGEHGYA--------------------------------------KEV 487
             W  +I G    G HG A                                      ++ 
Sbjct: 373 GHWTAIIVG---LGIHGMANHALALFLEMCKTGLKPNAIIFIGVLNACNHAGLVDDGRQY 429

Query: 488 FELMPVR-----NVSSWNTIVDMYCKCGDMEMARKLFEDMP-EKDVISWNAL 625
           F++M         +  +  +VD+ C+ G +E A+   E+MP   + + W +L
Sbjct: 430 FDMMMNEYKIEPTLEHYGCLVDILCRAGHLEEAKNTIENMPISPNKVIWMSL 481


>ref|XP_002533966.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223526049|gb|EEF28413.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 515

 Score =  155 bits (391), Expect = 7e-36
 Identities = 75/206 (36%), Positives = 121/206 (58%)
 Frame = +2

Query: 8   GLTQNDLVFGQLFLCCSISNTMNYARHLFDKLHHPKLFFYNAMIKGYSLNDFHQDALTLY 187
           GL  ND +  ++    ++   M +A  LFD++  P +  +NAM+KGYSLND H++ + L+
Sbjct: 93  GLQFNDYITPKIITSFALFKRMRHAHKLFDQIPEPNVSNWNAMLKGYSLNDSHREVIVLF 152

Query: 188 TLMRYRSVACDSFTFPVVLRSVSTLGKIHIGKELHGLVLKMGCAERLIVQTALIDMYCAC 367
             M    +  + F+FP+V++S   +     G+ELH  V+K GC     V T LID+Y + 
Sbjct: 153 RKMISMDILPNCFSFPIVIKSSVKINAFKEGEELHCFVIKSGCRANPFVGTMLIDLYSSG 212

Query: 368 GLSSYGRWVFDKIVDKDVICWNTMIAGYIKCGEHGYAKEVFELMPVRNVSSWNTIVDMYC 547
            +      VF ++++++V+ W +MI G+I C +   A+ +FEL P R+V  WN ++  Y 
Sbjct: 213 RMIVSAYRVFGEMIERNVVAWTSMIKGFILCNDIETARRLFELAPQRDVVLWNIMISGYI 272

Query: 548 KCGDMEMARKLFEDMPEKDVISWNAL 625
             GD+  A++LF  MP KDV+SWN L
Sbjct: 273 DIGDLVRAQELFHKMPNKDVMSWNTL 298



 Score = 63.5 bits (153), Expect = 3e-08
 Identities = 44/160 (27%), Positives = 70/160 (43%), Gaps = 2/160 (1%)
 Frame = +2

Query: 89  LFDKLHHPKLFFYNAMIKGYSLNDFHQDALTLYTLMRYRSVAC-DSFTFPVVLRSVSTLG 265
           LF+++    +F +N +I GY+ +    + L+ +  M    +   +  T   VL + + LG
Sbjct: 314 LFEEMPERNVFSWNGLIGGYAHHGCFLEVLSSFKRMLVDGIVVPNDATLVTVLSACARLG 373

Query: 266 KIHIGKELHGLVLKMGCAERLIVQTALIDMYCACGLSSYGRWVFDKIVDKDVICWNTMIA 445
            + +GK +H      G    + +  ALIDMY  CG       VF  +  KD+I WNT+I 
Sbjct: 374 ALDLGKWVHMYAQSNGYKGNVYIGNALIDMYAKCGNVENAIVVFKSLDKKDLISWNTLIG 433

Query: 446 GYIKCGEHGYAKEVFELM-PVRNVSSWNTIVDMYCKCGDM 562
           G    G    A  +F  M          T + + C C  M
Sbjct: 434 GLAVHGRAADALYLFSRMKDAGEKPDGITFLGVLCACTHM 473


>ref|XP_004137583.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g74630-like [Cucumis sativus]
           gi|449487109|ref|XP_004157499.1| PREDICTED:
           pentatricopeptide repeat-containing protein
           At1g74630-like [Cucumis sativus]
          Length = 642

 Score =  154 bits (390), Expect = 1e-35
 Identities = 78/211 (36%), Positives = 130/211 (61%), Gaps = 3/211 (1%)
 Frame = +2

Query: 2   KTGLTQNDLVFGQLFLCCSIS--NTMNYARHLFDKLHHPKLFFYNAMIKGYSLNDFHQDA 175
           KT L    LV G+L L C+++  ++++YAR LF  + +P +F YN +I+G S +D   +A
Sbjct: 30  KTCLNSYPLVSGKLLLHCAVTLPDSLHYARRLFLDIRNPDVFMYNTLIRGLSDSDTPSNA 89

Query: 176 LTLYTLMRYRSVAC-DSFTFPVVLRSVSTLGKIHIGKELHGLVLKMGCAERLIVQTALID 352
           L L+  MR +SVA  DSF+F  +L++ +    +  G +LH L +  G    L V T LI 
Sbjct: 90  LQLFVEMRRKSVALPDSFSFAFLLKAAANCRALTNGLQLHCLAVGYGLDSHLFVGTTLIS 149

Query: 353 MYCACGLSSYGRWVFDKIVDKDVICWNTMIAGYIKCGEHGYAKEVFELMPVRNVSSWNTI 532
           MY  C    + R VFD++++ +++ WN ++A   +C     A++VF  MP+RN++SWN +
Sbjct: 150 MYAECACLVFARKVFDEMIEPNIVAWNAIVAACFRCEGVKDAEQVFRCMPIRNLTSWNIM 209

Query: 533 VDMYCKCGDMEMARKLFEDMPEKDVISWNAL 625
           +  Y K G++++AR++F  MP KD +SW+ +
Sbjct: 210 LAGYTKAGELQLAREVFMKMPLKDDVSWSTM 240



 Score = 72.0 bits (175), Expect = 8e-11
 Identities = 43/142 (30%), Positives = 65/142 (45%)
 Frame = +2

Query: 71  MNYARHLFDKLHHPKLFFYNAMIKGYSLNDFHQDALTLYTLMRYRSVACDSFTFPVVLRS 250
           +  AR +F K+       ++ MI G++ N    DA   +  +R   +  +  +   VL +
Sbjct: 219 LQLAREVFMKMPLKDDVSWSTMIVGFAHNGNFNDAFAFFREVRREGMRPNEVSLTGVLSA 278

Query: 251 VSTLGKIHIGKELHGLVLKMGCAERLIVQTALIDMYCACGLSSYGRWVFDKIVDKDVICW 430
            +  G    G+ LHG V K G  + + V  ALID Y  CG     R VFD ++ +  + W
Sbjct: 279 CAQAGAFEFGRILHGFVEKSGFLQIISVNNALIDTYSKCGNLDMARLVFDNMLRRSAVSW 338

Query: 431 NTMIAGYIKCGEHGYAKEVFEL 496
             MIAG      HGY +E   L
Sbjct: 339 TAMIAG---MAMHGYGEEAIRL 357


>emb|CBI22243.3| unnamed protein product [Vitis vinifera]
          Length = 526

 Score =  153 bits (386), Expect = 3e-35
 Identities = 77/208 (37%), Positives = 122/208 (58%), Gaps = 2/208 (0%)
 Frame = +2

Query: 8   GLTQNDLVFGQLFLCCSI--SNTMNYARHLFDKLHHPKLFFYNAMIKGYSLNDFHQDALT 181
           G   N     +L    SI  S TM YA  LF  +  P  F +N MI+G + +    +A++
Sbjct: 5   GFNSNTSALRELIYASSIAISGTMAYAHQLFPHITEPDTFMWNTMIRGSAQSPSPLNAIS 64

Query: 182 LYTLMRYRSVACDSFTFPVVLRSVSTLGKIHIGKELHGLVLKMGCAERLIVQTALIDMYC 361
           LY+ M    V  D FTFP VL++ + L  + +G  +HG V ++G      V+  LI  + 
Sbjct: 65  LYSQMENGCVRPDKFTFPFVLKACTRLCWVKMGFGVHGRVFRLGFESNTFVRNTLIYFHA 124

Query: 362 ACGLSSYGRWVFDKIVDKDVICWNTMIAGYIKCGEHGYAKEVFELMPVRNVSSWNTIVDM 541
            CG  +  R +FD    +DV+ W+ + AGY + GE G A+++F+ MPV+++ SWN ++  
Sbjct: 125 NCGDLAVARALFDGSAKRDVVAWSALTAGYARRGELGVARQLFDEMPVKDLVSWNVMITG 184

Query: 542 YCKCGDMEMARKLFEDMPEKDVISWNAL 625
           Y K G+ME ARKLF+++P++DV++WNA+
Sbjct: 185 YAKRGEMESARKLFDEVPKRDVVTWNAM 212



 Score = 73.6 bits (179), Expect = 3e-11
 Identities = 47/143 (32%), Positives = 74/143 (51%), Gaps = 1/143 (0%)
 Frame = +2

Query: 71  MNYARHLFDKLHHPKLFFYNAMIKGYSLNDFHQDALTLYTLMRYRSVACDSFTFPVVLRS 250
           M  AR LFD++    +  +NAMI GY L   +Q AL ++  MR      D  T   +L +
Sbjct: 191 MESARKLFDEVPKRDVVTWNAMIAGYVLCGSNQQALEMFEEMRSVGELPDEVTMLSLLSA 250

Query: 251 VSTLGKIHIGKELHGLVLKMGCAE-RLIVQTALIDMYCACGLSSYGRWVFDKIVDKDVIC 427
            + LG +  G+ +H  + +MG  +  +++  ALIDMY  CG       VF  + +KDV  
Sbjct: 251 CTDLGDLDAGQRIHCCISEMGFRDLSVLLGNALIDMYAKCGSIVRALEVFQGMREKDVST 310

Query: 428 WNTMIAGYIKCGEHGYAKEVFEL 496
           WN+++ G      HG+A++   L
Sbjct: 311 WNSVLGG---LAFHGHAEKSIHL 330


>ref|XP_002283796.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g15300-like [Vitis vinifera]
          Length = 550

 Score =  153 bits (386), Expect = 3e-35
 Identities = 77/208 (37%), Positives = 122/208 (58%), Gaps = 2/208 (0%)
 Frame = +2

Query: 8   GLTQNDLVFGQLFLCCSI--SNTMNYARHLFDKLHHPKLFFYNAMIKGYSLNDFHQDALT 181
           G   N     +L    SI  S TM YA  LF  +  P  F +N MI+G + +    +A++
Sbjct: 40  GFNSNTSALRELIYASSIAISGTMAYAHQLFPHITEPDTFMWNTMIRGSAQSPSPLNAIS 99

Query: 182 LYTLMRYRSVACDSFTFPVVLRSVSTLGKIHIGKELHGLVLKMGCAERLIVQTALIDMYC 361
           LY+ M    V  D FTFP VL++ + L  + +G  +HG V ++G      V+  LI  + 
Sbjct: 100 LYSQMENGCVRPDKFTFPFVLKACTRLCWVKMGFGVHGRVFRLGFESNTFVRNTLIYFHA 159

Query: 362 ACGLSSYGRWVFDKIVDKDVICWNTMIAGYIKCGEHGYAKEVFELMPVRNVSSWNTIVDM 541
            CG  +  R +FD    +DV+ W+ + AGY + GE G A+++F+ MPV+++ SWN ++  
Sbjct: 160 NCGDLAVARALFDGSAKRDVVAWSALTAGYARRGELGVARQLFDEMPVKDLVSWNVMITG 219

Query: 542 YCKCGDMEMARKLFEDMPEKDVISWNAL 625
           Y K G+ME ARKLF+++P++DV++WNA+
Sbjct: 220 YAKRGEMESARKLFDEVPKRDVVTWNAM 247



 Score = 73.6 bits (179), Expect = 3e-11
 Identities = 47/143 (32%), Positives = 74/143 (51%), Gaps = 1/143 (0%)
 Frame = +2

Query: 71  MNYARHLFDKLHHPKLFFYNAMIKGYSLNDFHQDALTLYTLMRYRSVACDSFTFPVVLRS 250
           M  AR LFD++    +  +NAMI GY L   +Q AL ++  MR      D  T   +L +
Sbjct: 226 MESARKLFDEVPKRDVVTWNAMIAGYVLCGSNQQALEMFEEMRSVGELPDEVTMLSLLSA 285

Query: 251 VSTLGKIHIGKELHGLVLKMGCAE-RLIVQTALIDMYCACGLSSYGRWVFDKIVDKDVIC 427
            + LG +  G+ +H  + +MG  +  +++  ALIDMY  CG       VF  + +KDV  
Sbjct: 286 CTDLGDLDAGQRIHCCISEMGFRDLSVLLGNALIDMYAKCGSIVRALEVFQGMREKDVST 345

Query: 428 WNTMIAGYIKCGEHGYAKEVFEL 496
           WN+++ G      HG+A++   L
Sbjct: 346 WNSVLGG---LAFHGHAEKSIHL 365