BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00016543
         (393 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002331075.1| predicted protein [Populus trichocarpa] gi|2...    99   5e-19
gb|AAC63678.1| putative non-LTR retroelement reverse transcripta...    94   9e-18
gb|AAC95175.1| putative non-LTR retroelement reverse transcripta...    92   6e-17
gb|ABW81051.1| tn7 reverse transcriptase [Arabidopsis lyrata sub...    91   1e-16
dbj|BAF01687.1| hypothetical protein [Arabidopsis thaliana]            88   6e-16

>ref|XP_002331075.1| predicted protein [Populus trichocarpa] gi|222873039|gb|EEF10170.1|
           predicted protein [Populus trichocarpa]
          Length = 517

 Score = 98.6 bits (244), Expect = 5e-19
 Identities = 45/118 (38%), Positives = 65/118 (55%), Gaps = 1/118 (0%)
 Frame = +3

Query: 3   GPTMTRKMHQASWYTVCLAKEEGGLNIMDLHRWNKAAYCGLVYRVASKQE-SVWVQWTYE 179
           G  M     + +W  VCL K+EGGL I  +  WNK A    ++ + +  + S+W  W   
Sbjct: 137 GSDMRTTGAKVAWDQVCLPKKEGGLGIKSIKEWNKIALLKHIWNLCNDSDGSIWSTWIRS 196

Query: 180 QLIKNKHFWTMPIPQDCSWAWRHLLRTRKLAGNYIRTRIADGTTTYLWHDLWCTSEPL 353
            L++ ++FWT+  PQ+CSWAW  +L+ R LA   ++  I DG TT LW D W    PL
Sbjct: 197 NLLRGRNFWTIKTPQNCSWAWGKILKLRSLAWPKMKYIIGDGMTTSLWFDNWHPHSPL 254


>gb|AAC63678.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
           thaliana]
          Length = 1216

 Score = 94.4 bits (233), Expect = 9e-18
 Identities = 42/119 (35%), Positives = 67/119 (56%), Gaps = 1/119 (0%)
 Frame = +3

Query: 3   GPTMTRKMHQASWYTVCLAKEEGGLNIMDLHRWNKAAYCGLVYRVASKQESVWVQWTYEQ 182
           GP +  K  + SW  +C  K+EGGL +  L   NK +   L++R+ S Q+S+WV+WT   
Sbjct: 571 GPELNPKKAKVSWDEICKPKKEGGLGLQSLREANKVSSLKLIWRLLSCQDSLWVKWTRMN 630

Query: 183 LIKNKHFWTMPIPQDC-SWAWRHLLRTRKLAGNYIRTRIADGTTTYLWHDLWCTSEPLL 356
           L+K + FW++       SW WR LL+ R++A ++ +  + +G  T  W D W    PL+
Sbjct: 631 LLKKESFWSIGTHSTLGSWIWRRLLKHREVAKSFCKIEVNNGVNTSFWFDNWSEKGPLI 689


>gb|AAC95175.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1352

 Score = 91.7 bits (226), Expect = 6e-17
 Identities = 41/113 (36%), Positives = 63/113 (55%), Gaps = 1/113 (0%)
 Frame = +3

Query: 3    GPTMTRKMHQASWYTVCLAKEEGGLNIMDLHRWNKAAYCGLVYRVASKQESVWVQWTYEQ 182
            GP +  K  + +W  VC  KEEGGL +  L   N+ +   L++R+ S ++S+WV+W  + 
Sbjct: 997  GPDLNTKKAKIAWSEVCKLKEEGGLGLKPLKEANEVSLLKLIWRILSARDSLWVKWVNKH 1056

Query: 183  LIKNKHFWTMPIPQDC-SWAWRHLLRTRKLAGNYIRTRIADGTTTYLWHDLWC 338
            LI+ + FW++       SW WR +L+ R  A  + R  +  GT T  WHD WC
Sbjct: 1057 LIRKETFWSVKENTGLGSWLWRKILKQRDKARLFHRMEVRSGTFTSFWHDHWC 1109


>gb|ABW81051.1| tn7 reverse transcriptase [Arabidopsis lyrata subsp. lyrata]
          Length = 441

 Score = 90.9 bits (224), Expect = 1e-16
 Identities = 45/119 (37%), Positives = 63/119 (52%), Gaps = 1/119 (0%)
 Frame = +3

Query: 3   GPTMTRKMHQASWYTVCLAKEEGGLNIMDLHRWNKAAYCGLVYRVASKQESVWVQWTYEQ 182
           GP + RK  + SW  VC+ KEEGGL +  L   NK     L++R+ S   S+WVQW  + 
Sbjct: 70  GPELNRKKAKVSWNDVCMPKEEGGLGLRSLTEANKVCCLKLIWRLLS-SSSLWVQWLRQY 128

Query: 183 LIKNKHFWTMPIPQDC-SWAWRHLLRTRKLAGNYIRTRIADGTTTYLWHDLWCTSEPLL 356
           +I+   FW++       SW WR LL+ R LA  + +  I +G     WHD W    PL+
Sbjct: 129 VIRKGSFWSLRDTSTLGSWMWRKLLKYRHLASGFTQYEIRNGKGVSFWHDNWSPLGPLI 187


>dbj|BAF01687.1| hypothetical protein [Arabidopsis thaliana]
          Length = 1072

 Score = 88.2 bits (217), Expect = 6e-16
 Identities = 38/114 (33%), Positives = 55/114 (48%)
 Frame = +3

Query: 18   RKMHQASWYTVCLAKEEGGLNIMDLHRWNKAAYCGLVYRVASKQESVWVQWTYEQLIKNK 197
            RK  + SW   CL K EGGL       WNK     L++ +  +  S+W QW     + + 
Sbjct: 708  RKSSKVSWVDCCLPKSEGGLGFRSFGEWNKTLLLRLIWVLFDRDTSLWAQWQRHHRLGHA 767

Query: 198  HFWTMPIPQDCSWAWRHLLRTRKLAGNYIRTRIADGTTTYLWHDLWCTSEPLLK 359
             FW +   Q   W W+ LL  R LA  +I+ ++ +G T   W D W +  PL+K
Sbjct: 768  SFWQVNALQTDPWTWKMLLNLRPLAEKFIKAKVGNGGTVSFWFDCWTSLGPLIK 821