BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00016456
         (312 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_201453.1| pentatricopeptide repeat-containing protein [Ar...   115   3e-24
emb|CBI27471.3| unnamed protein product [Vitis vinifera]              114   6e-24
ref|XP_002272744.1| PREDICTED: pentatricopeptide repeat-containi...   114   6e-24
emb|CAN66581.1| hypothetical protein VITISV_030261 [Vitis vinifera]   114   6e-24
gb|ADQ43217.1| pentatricopeptide repeat [Eutrema parvulum]            112   3e-23

>ref|NP_201453.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|75171133|sp|Q9FJY7.1|PP449_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At5g66520 gi|10177533|dbj|BAB10928.1| selenium-binding
           protein-like [Arabidopsis thaliana]
           gi|332010841|gb|AED98224.1| pentatricopeptide
           repeat-containing protein [Arabidopsis thaliana]
          Length = 620

 Score =  115 bits (289), Expect = 3e-24
 Identities = 55/103 (53%), Positives = 71/103 (68%)
 Frame = -2

Query: 311 VDDVLGASLIDMYTKCGLLRGAISLFETIKTKGVSSWTSLIYGYAIHGHSLEALELFSEM 132
           +D VLG  LIDMY KCG +  A+ +F+ IK K V +WT+LI GYA HGH  EA+  F EM
Sbjct: 280 MDSVLGCVLIDMYAKCGEMEEALEVFKNIKKKSVQAWTALISGYAYHGHGREAISKFMEM 339

Query: 131 KSIGISPNRITFVAVLRACSHAGLVDRGREIFDEISRVDNIRP 3
           + +GI PN ITF AVL ACS+ GLV+ G+ IF  + R  N++P
Sbjct: 340 QKMGIKPNVITFTAVLTACSYTGLVEEGKLIFYSMERDYNLKP 382



 Score = 64.7 bits (156), Expect = 7e-09
 Identities = 32/96 (33%), Positives = 55/96 (57%)
 Frame = -2

Query: 308 DDVLGASLIDMYTKCGLLRGAISLFETIKTKGVSSWTSLIYGYAIHGHSLEALELFSEMK 129
           DDV   S+I  Y K G +  A++LF  +  K   SWT++I GY     + EAL+LF EM+
Sbjct: 180 DDVSWNSVIKGYVKAGKMDIALTLFRKMAEKNAISWTTMISGYVQADMNKEALQLFHEMQ 239

Query: 128 SIGISPNRITFVAVLRACSHAGLVDRGREIFDEISR 21
           +  + P+ ++    L AC+  G +++G+ I   +++
Sbjct: 240 NSDVEPDNVSLANALSACAQLGALEQGKWIHSYLNK 275


>emb|CBI27471.3| unnamed protein product [Vitis vinifera]
          Length = 574

 Score =  114 bits (286), Expect = 6e-24
 Identities = 51/103 (49%), Positives = 71/103 (68%)
 Frame = -2

Query: 311 VDDVLGASLIDMYTKCGLLRGAISLFETIKTKGVSSWTSLIYGYAIHGHSLEALELFSEM 132
           +D +LG  LIDMY KCG L  AI +F  ++ KGVS WT++I GYAIHG   EALE F +M
Sbjct: 235 IDPILGCVLIDMYAKCGDLEEAIEVFRKMEEKGVSVWTAMISGYAIHGRGREALEWFMKM 294

Query: 131 KSIGISPNRITFVAVLRACSHAGLVDRGREIFDEISRVDNIRP 3
           ++ G+ PN++TF  +L ACSHAGLV   + +F+ + R+   +P
Sbjct: 295 QTAGVEPNQMTFTGILTACSHAGLVHEAKLLFESMERIHGFKP 337


>ref|XP_002272744.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 622

 Score =  114 bits (286), Expect = 6e-24
 Identities = 51/103 (49%), Positives = 71/103 (68%)
 Frame = -2

Query: 311 VDDVLGASLIDMYTKCGLLRGAISLFETIKTKGVSSWTSLIYGYAIHGHSLEALELFSEM 132
           +D +LG  LIDMY KCG L  AI +F  ++ KGVS WT++I GYAIHG   EALE F +M
Sbjct: 283 IDPILGCVLIDMYAKCGDLEEAIEVFRKMEEKGVSVWTAMISGYAIHGRGREALEWFMKM 342

Query: 131 KSIGISPNRITFVAVLRACSHAGLVDRGREIFDEISRVDNIRP 3
           ++ G+ PN++TF  +L ACSHAGLV   + +F+ + R+   +P
Sbjct: 343 QTAGVEPNQMTFTGILTACSHAGLVHEAKLLFESMERIHGFKP 385



 Score = 69.7 bits (169), Expect = 2e-10
 Identities = 36/96 (37%), Positives = 55/96 (57%)
 Frame = -2

Query: 308 DDVLGASLIDMYTKCGLLRGAISLFETIKTKGVSSWTSLIYGYAIHGHSLEALELFSEMK 129
           D V   S+ID YTKCG +  A  +F  +  + + SWTS+I G    G   EAL LF  M+
Sbjct: 183 DTVSWNSMIDGYTKCGEIEMAYEIFNHMPERNIISWTSMISGCVGAGKPKEALNLFHRMQ 242

Query: 128 SIGISPNRITFVAVLRACSHAGLVDRGREIFDEISR 21
           + GI  + +  V+ L+AC+  G++D+G+ I   I +
Sbjct: 243 TAGIKLDNVALVSTLQACADLGVLDQGKWIHAYIKK 278


>emb|CAN66581.1| hypothetical protein VITISV_030261 [Vitis vinifera]
          Length = 622

 Score =  114 bits (286), Expect = 6e-24
 Identities = 51/103 (49%), Positives = 71/103 (68%)
 Frame = -2

Query: 311 VDDVLGASLIDMYTKCGLLRGAISLFETIKTKGVSSWTSLIYGYAIHGHSLEALELFSEM 132
           +D +LG  LIDMY KCG L  AI +F  ++ KGVS WT++I GYAIHG   EALE F +M
Sbjct: 283 IDPILGCVLIDMYAKCGDLEEAIEVFRKMEEKGVSVWTAMISGYAIHGRGREALEWFMKM 342

Query: 131 KSIGISPNRITFVAVLRACSHAGLVDRGREIFDEISRVDNIRP 3
           ++ G+ PN++TF  +L ACSHAGLV   + +F+ + R+   +P
Sbjct: 343 QTAGVEPNQMTFTGILTACSHAGLVHEAKLLFESMERIHGFKP 385



 Score = 69.7 bits (169), Expect = 2e-10
 Identities = 36/96 (37%), Positives = 55/96 (57%)
 Frame = -2

Query: 308 DDVLGASLIDMYTKCGLLRGAISLFETIKTKGVSSWTSLIYGYAIHGHSLEALELFSEMK 129
           D V   S+ID YTKCG +  A  +F  +  + + SWTS+I G    G   EAL LF  M+
Sbjct: 183 DTVSWNSMIDGYTKCGEIEMAYEIFNHMPERNIISWTSMISGCVGAGKPKEALNLFHRMQ 242

Query: 128 SIGISPNRITFVAVLRACSHAGLVDRGREIFDEISR 21
           + GI  + +  V+ L+AC+  G++D+G+ I   I +
Sbjct: 243 TAGIKLDNVALVSTLQACADLGVLDQGKWIHAYIKK 278


>gb|ADQ43217.1| pentatricopeptide repeat [Eutrema parvulum]
          Length = 616

 Score =  112 bits (280), Expect = 3e-23
 Identities = 52/103 (50%), Positives = 71/103 (68%)
 Frame = -2

Query: 311 VDDVLGASLIDMYTKCGLLRGAISLFETIKTKGVSSWTSLIYGYAIHGHSLEALELFSEM 132
           +D VL   LIDMY KCG +  A+ +F+ +KTK V  WT+LI GYA HG   EA+  F EM
Sbjct: 276 IDSVLCCVLIDMYAKCGEMEEALGVFKNMKTKSVQVWTALISGYAYHGLGREAISKFLEM 335

Query: 131 KSIGISPNRITFVAVLRACSHAGLVDRGREIFDEISRVDNIRP 3
           +++G+ PN ITF AVL ACS+ GLV+ G+ +F+ I R  N++P
Sbjct: 336 QNMGVKPNAITFTAVLTACSYTGLVEEGKSVFNTIERDYNLKP 378



 Score = 61.2 bits (147), Expect = 8e-08
 Identities = 33/91 (36%), Positives = 54/91 (59%), Gaps = 1/91 (1%)
 Frame = -2

Query: 308 DDVLGASLIDMYTKCGLLRGAISLFETIKTKGVS-SWTSLIYGYAIHGHSLEALELFSEM 132
           D V   S+I  Y K G +  A++LF  +  K  + SWT++I GY   G + EAL+LF EM
Sbjct: 175 DAVSWNSVIKGYVKAGEMDMALTLFRKMPEKNNAISWTTMISGYVQAGMNKEALQLFHEM 234

Query: 131 KSIGISPNRITFVAVLRACSHAGLVDRGREI 39
           ++  + P+ ++  + L ACS  G +++G+ I
Sbjct: 235 QNSNVPPDNVSLASALSACSQLGALEQGKWI 265