BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00016423
         (1549 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABN09154.1| RNA-directed DNA polymerase (Reverse transcriptas...   219   8e-58
gb|ABE87589.2| RNA-directed DNA polymerase (Reverse transcriptas...   198   2e-53
gb|ABD28670.2| RNA-directed DNA polymerase (Reverse transcriptas...   199   1e-48
gb|EEE66599.1| hypothetical protein OsJ_23164 [Oryza sativa Japo...   167   1e-41
gb|EAZ45328.1| hypothetical protein OsJ_29974 [Oryza sativa Japo...   168   2e-41

>gb|ABN09154.1| RNA-directed DNA polymerase (Reverse transcriptase) [Medicago
            truncatula]
          Length = 528

 Score =  219 bits (559), Expect(2) = 8e-58
 Identities = 110/218 (50%), Positives = 148/218 (67%)
 Frame = +1

Query: 778  FGIEPTTKPTTDRFQGHFYHHCWSIIKVDVCIAVQSFFKDTTVPEGLNANFITLIPKCTK 957
            F +   + P  D F   FY   W I+K DV  AV  FF    +    NAN + LIPK   
Sbjct: 126  FSLNNDSAPGPDGFGSCFYQIYWDIVKEDVIKAVLQFFNTGWILPNFNANTLILIPKTQN 185

Query: 958  AKKLNQFRPICMGNFLMKIISKVLQRRLNGVMHKLVSKEQYGFIKGKCVQSSIGLASELM 1137
            A  ++QFRPI M NF  KIISK+L  RL  +M  +VS+EQ GFI+G+ ++  + LASE +
Sbjct: 186  ADSMDQFRPIAMANFKFKIISKILADRLAQIMPNIVSQEQRGFIQGRNIKDCVCLASEAI 245

Query: 1138 NELNKKSFGGSAAIKVDISQAFDTMSWEFVCQVMSKMGFSLTWINWIRAIMESAKMSVLL 1317
            N L++KSFGG+ A KVDIS+AFDT++W+F+ +V+ + GFS T+ NWI AI++SAK+S+ +
Sbjct: 246  NMLDQKSFGGNLAFKVDISKAFDTLNWKFLLKVLKQFGFSETFCNWIDAILQSAKLSICI 305

Query: 1318 NGGPVGYFSVGRGLKQGDPLSPLLFALAEDCLSRGINE 1431
            NG   GYFS  RG++QGDPLSPLLF LAED LSR + +
Sbjct: 306  NGSQQGYFSCSRGVRQGDPLSPLLFCLAEDVLSRSLTK 343



 Score = 32.3 bits (72), Expect(2) = 8e-58
 Identities = 13/18 (72%), Positives = 16/18 (88%)
 Frame = +2

Query: 1478 PSHLLFADDIIIFTNGQI 1531
            PSH+L+ADDI+IF NG I
Sbjct: 362  PSHILYADDIMIFCNGGI 379


>gb|ABE87589.2| RNA-directed DNA polymerase (Reverse transcriptase); Ribonuclease H;
            Endonuclease/exonuclease/phosphatase [Medicago
            truncatula]
          Length = 1246

 Score =  198 bits (504), Expect(2) = 2e-53
 Identities = 93/209 (44%), Positives = 139/209 (66%)
 Frame = +1

Query: 802  PTTDRFQGHFYHHCWSIIKVDVCIAVQSFFKDTTVPEGLNANFITLIPKCTKAKKLNQFR 981
            P  + F GHFY   W I+  DV  +VQ FF    + + +N+N I LIPK   A+ +  +R
Sbjct: 460  PGPNGFGGHFYQTYWDIVGADVIQSVQDFFISGQLAQNINSNLIVLIPKVPGARVMGDYR 519

Query: 982  PICMGNFLMKIISKVLQRRLNGVMHKLVSKEQYGFIKGKCVQSSIGLASELMNELNKKSF 1161
            PI + NF  KIISK+L  RL  +  +++S EQ GFI+ + +   + LASE +N L K+ +
Sbjct: 520  PIALANFQFKIISKILADRLADITMRIISVEQRGFIRDRDISKCVILASEAINLLEKRQY 579

Query: 1162 GGSAAIKVDISQAFDTMSWEFVCQVMSKMGFSLTWINWIRAIMESAKMSVLLNGGPVGYF 1341
            GG+ A+KVDI++AFDT+ W F+  V+ + GF   +++WI  I++SA++SVL+NG  VG+F
Sbjct: 580  GGNVALKVDIAKAFDTLDWNFLLAVLQRFGFDEKFVHWILVILQSARLSVLVNGKAVGFF 639

Query: 1342 SVGRGLKQGDPLSPLLFALAEDCLSRGIN 1428
            +   G++QGDPLSPLLF L E+ LSR ++
Sbjct: 640  TCSHGVRQGDPLSPLLFCLVEEVLSRALS 668



 Score = 38.9 bits (89), Expect(2) = 2e-53
 Identities = 14/34 (41%), Positives = 25/34 (73%)
 Frame = +2

Query: 1442 IMPMLYVKGMPAPSHLLFADDIIIFTNGQIRYLK 1543
            ++PM Y +G+  P+H+L+ADD++IF  G  R ++
Sbjct: 676  LIPMSYCRGVSFPTHILYADDVLIFCTGTKRNIR 709


>gb|ABD28670.2| RNA-directed DNA polymerase (Reverse transcriptase) [Medicago
            truncatula]
          Length = 642

 Score =  199 bits (507), Expect = 1e-48
 Identities = 96/217 (44%), Positives = 143/217 (65%)
 Frame = +1

Query: 778  FGIEPTTKPTTDRFQGHFYHHCWSIIKVDVCIAVQSFFKDTTVPEGLNANFITLIPKCTK 957
            F +     P  D F   F+   W+I+K DV  AV  FFK+  +P   NAN I LIPK   
Sbjct: 187  FDLNSDDAPGPDVFGACFFQIYWNIVKKDVYEAVLDFFKNGWLPNNFNANSIILIPKTPN 246

Query: 958  AKKLNQFRPICMGNFLMKIISKVLQRRLNGVMHKLVSKEQYGFIKGKCVQSSIGLASELM 1137
            A  ++Q+R I + NF  KII+KVL  RL  ++  ++SKEQ GF++G+ ++  I L SE +
Sbjct: 247  ADSVDQYRTIALVNFKFKIINKVLADRLAKILPSIISKEQRGFVQGRNIRDCIALTSEAI 306

Query: 1138 NELNKKSFGGSAAIKVDISQAFDTMSWEFVCQVMSKMGFSLTWINWIRAIMESAKMSVLL 1317
            N L+ KSFGG+ A+K+D+++AFDT++W+F+  V+   GF+  + NWI+ I+ S+KM + +
Sbjct: 307  NVLDNKSFGGNLALKIDVTKAFDTLNWDFLLLVLKTFGFNELFCNWIKTILHSSKMFISM 366

Query: 1318 NGGPVGYFSVGRGLKQGDPLSPLLFALAEDCLSRGIN 1428
            NG   G+F+  RG++QGDPLSPLLF + E+ LSR I+
Sbjct: 367  NGAQHGFFNCNRGVRQGDPLSPLLFCIVEEVLSRSIS 403


>gb|EEE66599.1| hypothetical protein OsJ_23164 [Oryza sativa Japonica Group]
          Length = 813

 Score =  167 bits (422), Expect(2) = 1e-41
 Identities = 88/221 (39%), Positives = 127/221 (57%), Gaps = 2/221 (0%)
 Frame = +1

Query: 778  FGIEPTTKPTTDRFQGHFYHHCWSIIKVDVCIAVQSFFKDTTVPEGLNANFITLIPKCTK 957
            F I P   P  D F   F+   W  IK DV  AV+SFF+ + +PEG+N   I LIPK  +
Sbjct: 512  FQIGPIKAPGPDGFPARFFQRNWDAIKKDVVSAVKSFFETSIMPEGVNDTAIVLIPKVDQ 571

Query: 958  AKKLNQFRPICMGNFLMKIISKVLQRRLNGVMHKLVSKEQYGFIKGKCVQSSIGLASELM 1137
              +L  FRPI + N + KI+SK L  RL  ++ +LVS+ Q  F+ G+ +  +  LA E  
Sbjct: 572  PMELKDFRPISLCNVIYKIVSKCLVNRLRPILDELVSQNQSAFVPGRMITDNALLAFECF 631

Query: 1138 N--ELNKKSFGGSAAIKVDISQAFDTMSWEFVCQVMSKMGFSLTWINWIRAIMESAKMSV 1311
            +  + NK +   + A K+D+S+A+D + W F+ Q M K+GF+  WI WI   + S + S+
Sbjct: 632  HFIQRNKNANKAACAYKLDLSKAYDRVDWVFLEQTMCKLGFAPRWIKWIMTCLSSVRYSI 691

Query: 1312 LLNGGPVGYFSVGRGLKQGDPLSPLLFALAEDCLSRGINEQ 1434
              NG  +  F+  RGL+QGDPLSP LF    D  SR + E+
Sbjct: 692  KFNGTLLDTFAPSRGLRQGDPLSPFLFLFVADGFSRLMEER 732



 Score = 31.2 bits (69), Expect(2) = 1e-41
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = +2

Query: 1442 IMPMLYVKGMPAPSHLLFADDIIIF 1516
            I P+   +G P  SHLLFADD ++F
Sbjct: 738  ITPVKICRGAPGISHLLFADDTLLF 762


>gb|EAZ45328.1| hypothetical protein OsJ_29974 [Oryza sativa Japonica Group]
          Length = 469

 Score =  168 bits (426), Expect(2) = 2e-41
 Identities = 88/221 (39%), Positives = 127/221 (57%), Gaps = 2/221 (0%)
 Frame = +1

Query: 778  FGIEPTTKPTTDRFQGHFYHHCWSIIKVDVCIAVQSFFKDTTVPEGLNANFITLIPKCTK 957
            F I P   P  D F   FY   W +IK DV  AV+ FF    +P+G+NA  I LIPK  +
Sbjct: 121  FQIGPLKAPGPDGFPARFYQRNWGLIKSDVVRAVKEFFHTGIMPDGINATAIVLIPKVNQ 180

Query: 958  AKKLNQFRPICMGNFLMKIISKVLQRRLNGVMHKLVSKEQYGFIKGKCVQSSIGLASELM 1137
              +L +FRPI + N + KI+SK L  RL  ++  L+S+ Q  F+ G+ +  +  LA E  
Sbjct: 181  PMELKEFRPISLCNVIYKIVSKCLVNRLRPILDDLISQNQSAFVPGRMITDNALLAFECF 240

Query: 1138 NELNKKSFGGSA--AIKVDISQAFDTMSWEFVCQVMSKMGFSLTWINWIRAIMESAKMSV 1311
            + + +    G A  A K+D+S+A+D + W F+ Q M K+GF+  W++WI   + S + SV
Sbjct: 241  HSIQRNKSPGKAACAYKLDLSKAYDRVDWSFLEQAMYKLGFTHRWVSWIMTCLTSMRYSV 300

Query: 1312 LLNGGPVGYFSVGRGLKQGDPLSPLLFALAEDCLSRGINEQ 1434
             LNG  +  F+  RGL QGDPLSP LF    D LS  ++E+
Sbjct: 301  KLNGTLLSTFAPSRGLHQGDPLSPFLFLFVADGLSLLLDEK 341



 Score = 28.5 bits (62), Expect(2) = 2e-41
 Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
 Frame = +2

Query: 1421 ESMNRRIIMPMLYVKGMPAPSHLLFADDIIIF---TNGQIRYLK 1543
            E + +  I P+   +  P  SHLLF DD ++F    NGQ   ++
Sbjct: 340  EKVLQGAITPVQVCRRAPGISHLLFVDDTLLFFKADNGQANVIR 383