BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00016179
         (716 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ADB85091.1| ribulose 1,5-bisphosphate carboxylase small subun...   271   7e-71
dbj|BAI53119.1| ribulose-1,5-bisphosphate carboxylase/oxygenase ...   271   1e-70
ref|XP_002532149.1| Ribulose bisphosphate carboxylase small chai...   271   1e-70
gb|AFK48034.1| unknown [Lotus japonicus]                              268   6e-70
gb|AAA33866.1| ribulose 1,5-bisphosphate carboxylase small subun...   268   8e-70

>gb|ADB85091.1| ribulose 1,5-bisphosphate carboxylase small subunit [Jatropha
           curcas]
          Length = 181

 Score =  271 bits (694), Expect = 7e-71
 Identities = 126/158 (79%), Positives = 140/158 (88%)
 Frame = +2

Query: 2   SMVAPFTGLKSVSAFPATRKNADITTIANNGGRVSCMKVWPTEGVKKFETLSYLPPLTRE 181
           +MVAPFTGLKS + FPA +   DIT+IA NGGRV CMKVWPT+G+KKFETLSYLPPLTRE
Sbjct: 23  TMVAPFTGLKSTAGFPARKTTNDITSIAGNGGRVQCMKVWPTQGLKKFETLSYLPPLTRE 82

Query: 182 QLIKEVEYLLRSNLIPCLEFELKDGFVYRENNRSPGYYDGRYWTMWKLPMFGCTDAVQVV 361
           QL KEVEYLLRS  +PCLEFEL+ GFVYRENNRSPGYYDGRYWTMWKLPMFGCTDAVQV+
Sbjct: 83  QLAKEVEYLLRSGWVPCLEFELEHGFVYRENNRSPGYYDGRYWTMWKLPMFGCTDAVQVL 142

Query: 362 NELDEAAKAYPTAFIRIIGFDNVRQVQVISFIAHRPPG 475
           NELDEA KA+P  F+RIIGFD+ RQVQ ISFIA++P G
Sbjct: 143 NELDEAIKAHPNGFVRIIGFDSYRQVQCISFIAYKPKG 180


>dbj|BAI53119.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
           [Eucalyptus globulus]
          Length = 181

 Score =  271 bits (692), Expect = 1e-70
 Identities = 123/159 (77%), Positives = 142/159 (89%)
 Frame = +2

Query: 2   SMVAPFTGLKSVSAFPATRKNADITTIANNGGRVSCMKVWPTEGVKKFETLSYLPPLTRE 181
           SMVAPFTGLKS SAFP TRK+ADIT++A+NGGRV CM+VWP  G KKFETLSYLPPL+RE
Sbjct: 23  SMVAPFTGLKSASAFPVTRKSADITSLASNGGRVQCMQVWPPIGKKKFETLSYLPPLSRE 82

Query: 182 QLIKEVEYLLRSNLIPCLEFELKDGFVYRENNRSPGYYDGRYWTMWKLPMFGCTDAVQVV 361
           +L+KE+EYLLR N +PCLEFEL+ GFVYR+N++SPGYYDGRYWTMWKLPMFGCTD +QV 
Sbjct: 83  ELLKEIEYLLRMNWVPCLEFELEKGFVYRDNHKSPGYYDGRYWTMWKLPMFGCTDPLQVF 142

Query: 362 NELDEAAKAYPTAFIRIIGFDNVRQVQVISFIAHRPPGY 478
            ELDEA K YP AF+RIIGFDN RQVQ ISFIA++PPG+
Sbjct: 143 KELDEAIKTYPNAFVRIIGFDNKRQVQCISFIAYKPPGF 181


>ref|XP_002532149.1| Ribulose bisphosphate carboxylase small chain, chloroplast
           precursor, putative [Ricinus communis]
           gi|223528159|gb|EEF30223.1| Ribulose bisphosphate
           carboxylase small chain, chloroplast precursor, putative
           [Ricinus communis]
          Length = 185

 Score =  271 bits (692), Expect = 1e-70
 Identities = 129/160 (80%), Positives = 140/160 (87%), Gaps = 1/160 (0%)
 Frame = +2

Query: 2   SMVAPFTGLKSVSAFPATRK-NADITTIANNGGRVSCMKVWPTEGVKKFETLSYLPPLTR 178
           SMVAPFTGLKS SAFP TRK N DITT+ANNGGRV CM+VWP  G KKFETLSYLP LTR
Sbjct: 23  SMVAPFTGLKSTSAFPVTRKTNTDITTLANNGGRVQCMQVWPPLGKKKFETLSYLPDLTR 82

Query: 179 EQLIKEVEYLLRSNLIPCLEFELKDGFVYRENNRSPGYYDGRYWTMWKLPMFGCTDAVQV 358
           EQL KEVEYLLR   +PCLEFEL+ GFVYREN RSPGYYDGRYWTMWKLPMFGC+DAVQV
Sbjct: 83  EQLAKEVEYLLRKGWVPCLEFELEHGFVYRENARSPGYYDGRYWTMWKLPMFGCSDAVQV 142

Query: 359 VNELDEAAKAYPTAFIRIIGFDNVRQVQVISFIAHRPPGY 478
           + ELDEA KAYP +F+RIIGFDNVRQVQ ISFIA++PP +
Sbjct: 143 LKELDEAIKAYPNSFVRIIGFDNVRQVQCISFIAYKPPSF 182


>gb|AFK48034.1| unknown [Lotus japonicus]
          Length = 181

 Score =  268 bits (686), Expect = 6e-70
 Identities = 124/159 (77%), Positives = 138/159 (86%)
 Frame = +2

Query: 2   SMVAPFTGLKSVSAFPATRKNADITTIANNGGRVSCMKVWPTEGVKKFETLSYLPPLTRE 181
           +MVAPFTGLKS++ FP  + N DIT+IANNGGRV CM+VWP  G KKFETLSYLPPLT E
Sbjct: 23  NMVAPFTGLKSMAGFPVRKVNNDITSIANNGGRVQCMQVWPPIGKKKFETLSYLPPLTTE 82

Query: 182 QLIKEVEYLLRSNLIPCLEFELKDGFVYRENNRSPGYYDGRYWTMWKLPMFGCTDAVQVV 361
           QL+KEVEYLLR   +PCLEFE + GFVYREN++SPGYYDGRYWTMWKLPMFGC+DA QV+
Sbjct: 83  QLLKEVEYLLRKGWVPCLEFETEKGFVYRENHKSPGYYDGRYWTMWKLPMFGCSDATQVL 142

Query: 362 NELDEAAKAYPTAFIRIIGFDNVRQVQVISFIAHRPPGY 478
            ELDEA KAYP AF+RIIGFDNVRQVQ ISFIAHRP GY
Sbjct: 143 KELDEAVKAYPNAFVRIIGFDNVRQVQCISFIAHRPAGY 181


>gb|AAA33866.1| ribulose 1,5-bisphosphate carboxylase small subunit [Malus x
           domestica x Pyrus communis]
          Length = 179

 Score =  268 bits (685), Expect = 8e-70
 Identities = 125/157 (79%), Positives = 140/157 (89%)
 Frame = +2

Query: 5   MVAPFTGLKSVSAFPATRKNADITTIANNGGRVSCMKVWPTEGVKKFETLSYLPPLTREQ 184
           MVAPFTGLKS SAFP TRK+ DIT+IA+NGGRV CM+VWP  G+KKFETLSYLPPL+ E 
Sbjct: 22  MVAPFTGLKSSSAFPVTRKSNDITSIASNGGRVQCMQVWPPLGLKKFETLSYLPPLSTES 81

Query: 185 LIKEVEYLLRSNLIPCLEFELKDGFVYRENNRSPGYYDGRYWTMWKLPMFGCTDAVQVVN 364
           L KEV+YLLR N +PCLEFEL+ GFVYRENNRSPGYYDGRYWTMWKLPMFGCTD+ QV+ 
Sbjct: 82  LAKEVDYLLRKNWVPCLEFELEHGFVYRENNRSPGYYDGRYWTMWKLPMFGCTDSSQVLK 141

Query: 365 ELDEAAKAYPTAFIRIIGFDNVRQVQVISFIAHRPPG 475
           EL+EA KAYP +FIRIIGFDNVRQVQ ISFIA++PPG
Sbjct: 142 ELEEAKKAYPQSFIRIIGFDNVRQVQCISFIAYKPPG 178