BLASTX nr result

ID: Coptis21_contig00016169 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00016169
         (594 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBJ20728.1| hypothetical protein [Beta vulgaris subsp. marit...    61   2e-07
emb|CBI31113.3| unnamed protein product [Vitis vinifera]               56   4e-06
gb|AAM15514.1| hypothetical protein [Arabidopsis thaliana]             55   7e-06
gb|AAR20785.1| At2g07674 [Arabidopsis thaliana]                        55   7e-06
gb|AAM15419.1| hypothetical protein [Arabidopsis thaliana]             55   9e-06

>emb|CBJ20728.1| hypothetical protein [Beta vulgaris subsp. maritima]
          Length = 360

 Score = 60.8 bits (146), Expect = 2e-07
 Identities = 50/146 (34%), Positives = 67/146 (45%), Gaps = 4/146 (2%)
 Frame = -2

Query: 452 HFILRSSFYLTAVFLGNFIGSEGRAIMTTGRNLVLFAXXXXXXXXXFRLHCFRWKKKYGF 273
           HF LR S  L A F G  + SE   IM TG NLVL           +R +  +  +K+G 
Sbjct: 53  HFFLRGSLGLGAFFFGYGLVSEREYIMITGTNLVLIGTFLFFLVFFYRRYSLQLYQKFGK 112

Query: 272 RLVXXXXXXXXXXXXXXXXXLRIYLVSRLGLHLGELFPFL-IFSVGGLPLPDP---GGAS 105
            +V                 LRI++         ELF FL +F V G PLP P     +S
Sbjct: 113 GVVLTIYFSVFFLISIYLSFLRIFICGNALPLFVELFSFLGVFGVLGQPLPLPSPSNSSS 172

Query: 104 NSTSWTEDSFGIGVLLESFPKTTTTE 27
           NS+    ++F +GVLLES  +  TT+
Sbjct: 173 NSSQARWEAFDMGVLLESGSEEGTTD 198


>emb|CBI31113.3| unnamed protein product [Vitis vinifera]
          Length = 405

 Score = 56.2 bits (134), Expect = 4e-06
 Identities = 38/71 (53%), Positives = 45/71 (63%), Gaps = 3/71 (4%)
 Frame = -2

Query: 209 RIYLVSRLGL---HLGELFPFLIFSVGGLPLPDPGGASNSTSWTEDSFGIGVLLESFPKT 39
           RIYLVSRLG    H G     ++ + GG  LP   G S+S+SWTEDSF + VLLE F + 
Sbjct: 63  RIYLVSRLGSCCSHAGLSGLLILCASGGEILPY-SGPSSSSSWTEDSFEMRVLLEPFSE- 120

Query: 38  TTTEGTSVNQP 6
           T  EGTSVN P
Sbjct: 121 TEMEGTSVNPP 131


>gb|AAM15514.1| hypothetical protein [Arabidopsis thaliana]
          Length = 477

 Score = 55.5 bits (132), Expect = 7e-06
 Identities = 53/159 (33%), Positives = 71/159 (44%), Gaps = 7/159 (4%)
 Frame = -2

Query: 464 KNITHFILRSSFYLTAVFLGNFIGSEGRAIMTTGRNLVLFAXXXXXXXXXFRLHCFRWKK 285
           KN+   +L     L   F   F+GSEG AIMTT R +   +         F  H FR K 
Sbjct: 2   KNMVRLLLPLLGALAGSFCARFLGSEGSAIMTTTR-VSFSSILVVSFLFCFHFHSFRLKG 60

Query: 284 KYGFRLVXXXXXXXXXXXXXXXXXLRIYLVSRLGLHLGELFPFLIFSVGGLPLPD--PGG 111
               +++                   I+LV   GL L  L P ++ ++GG  LP   P G
Sbjct: 61  PQK-KIIYLFLVFSMGFVGSLIRIEVIHLVG--GLALPVLGPLVLNAIGGQALPSTGPSG 117

Query: 110 ASNSTSWTEDSFGIGVLLESFPK----TTTTEG-TSVNQ 9
           + +S+ W EDSF +GVL ES       + T EG  SVNQ
Sbjct: 118 SGSSSMWEEDSFELGVLEESDSPPAGGSRTEEGEPSVNQ 156


>gb|AAR20785.1| At2g07674 [Arabidopsis thaliana]
          Length = 324

 Score = 55.5 bits (132), Expect = 7e-06
 Identities = 53/159 (33%), Positives = 71/159 (44%), Gaps = 7/159 (4%)
 Frame = -2

Query: 464 KNITHFILRSSFYLTAVFLGNFIGSEGRAIMTTGRNLVLFAXXXXXXXXXFRLHCFRWKK 285
           KN+   +L     L   F   F+GSEG AIMTT R +   +         F  H FR K 
Sbjct: 2   KNMVRLLLPLLGALAGSFCARFLGSEGSAIMTTTR-VSFSSILVVSFLFCFHFHSFRLKG 60

Query: 284 KYGFRLVXXXXXXXXXXXXXXXXXLRIYLVSRLGLHLGELFPFLIFSVGGLPLPD--PGG 111
               +++                   I+LV   GL L  L P ++ ++GG  LP   P G
Sbjct: 61  PQK-KIIYLFLVFSMGFVGSLIRIEVIHLVG--GLALPVLGPLVLNAIGGQALPSTGPSG 117

Query: 110 ASNSTSWTEDSFGIGVLLESFPK----TTTTEG-TSVNQ 9
           + +S+ W EDSF +GVL ES       + T EG  SVNQ
Sbjct: 118 SGSSSMWEEDSFELGVLEESDSPPAGGSRTEEGEPSVNQ 156


>gb|AAM15419.1| hypothetical protein [Arabidopsis thaliana]
          Length = 301

 Score = 55.1 bits (131), Expect = 9e-06
 Identities = 46/140 (32%), Positives = 63/140 (45%), Gaps = 2/140 (1%)
 Frame = -2

Query: 464 KNITHFILRSSFYLTAVFLGNFIGSEGRAIMTTGRNLVLFAXXXXXXXXXFRLHCFRWKK 285
           KN+   +L     L   F   F+GSEG AIMTT R +   +         F  H FR K 
Sbjct: 2   KNMVRLLLPLLGALAGSFCARFLGSEGSAIMTTTR-VSFSSILVVSFLFCFHFHSFRLKG 60

Query: 284 KYGFRLVXXXXXXXXXXXXXXXXXLRIYLVSRLGLHLGELFPFLIFSVGGLPLPD--PGG 111
               +++                   I+LV   GL L  L P ++ ++GG  LP   P G
Sbjct: 61  PQK-KIIYLFLVFSMGFVGSLIRIEVIHLVG--GLALPVLGPLVLNAIGGQALPSTGPSG 117

Query: 110 ASNSTSWTEDSFGIGVLLES 51
           + +S+ W EDSF +GVL ES
Sbjct: 118 SGSSSMWEEDSFELGVLEES 137


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