BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00016161
         (808 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI20759.3| unnamed protein product [Vitis vinifera]              364   1e-98
ref|XP_002280516.1| PREDICTED: pentatricopeptide repeat-containi...   364   1e-98
ref|XP_002515341.1| pentatricopeptide repeat-containing protein,...   347   2e-93
ref|XP_003545545.1| PREDICTED: pentatricopeptide repeat-containi...   338   8e-91
ref|XP_003588656.1| Pentatricopeptide repeat-containing protein ...   335   9e-90

>emb|CBI20759.3| unnamed protein product [Vitis vinifera]
          Length = 570

 Score =  364 bits (934), Expect = 1e-98
 Identities = 181/270 (67%), Positives = 219/270 (81%), Gaps = 1/270 (0%)
 Frame = -1

Query: 808  LTYNTLVFACVKSRQMDAAMQLFAEMKIEAQKVTFHYLLPDAVTYTTLLKGFSDANDFIS 629
            LTYNTL+FACVK+ ++D AM+ F EMK  AQK     L PDA+TYTTLLKGF  A D +S
Sbjct: 253  LTYNTLIFACVKTEKLDTAMRYFEEMKENAQKTIDVDLFPDAITYTTLLKGFGHAKDLLS 312

Query: 628  VQKLVIEMKSSENLIIDRIAYTAIVDALLICGSTKGALCIFGEILKLTGVHPYLRPKPHL 449
            VQK+V+EMKSS NL +DR AYTAIVDALL CGS+KGALC+FGEI+K  G +  LRPKPHL
Sbjct: 313  VQKIVMEMKSSNNLFVDRTAYTAIVDALLNCGSSKGALCMFGEIIKRAGQNFNLRPKPHL 372

Query: 448  YLSMMRTFALKGDYHMVKSFHARMWPDTSGTISPALQVEADELLMEAAINDGQVDVAREV 269
            Y+SMM   A +GDY++VKS H RM PD++GTISPA+Q+EAD+LLMEAA+NDGQVD A   
Sbjct: 373  YISMMSALAARGDYNLVKSLHKRMRPDSAGTISPAVQIEADQLLMEAALNDGQVDAATHH 432

Query: 268  LSNVNTKWEEISWTSRGSMAAVRVEALSGFS-TMFSPYLLPQVILDGPIKNIMMPFDEAQ 92
            LSN+ T+W+ I W SRG M AVR+EAL GF+ +MFSPYLLPQV    PI+NIMMPF+EA+
Sbjct: 433  LSNIITRWKGICWRSRGGMVAVRLEALLGFTRSMFSPYLLPQVSPADPIENIMMPFEEAR 492

Query: 91   PLHANLYLEKVVMRFFRDAVVPVIDDWGSC 2
            PL A L L++VVMRF++D+VVPVIDDWGSC
Sbjct: 493  PLLATLDLKRVVMRFYKDSVVPVIDDWGSC 522


>ref|XP_002280516.1| PREDICTED: pentatricopeptide repeat-containing protein At5g10690-like
            [Vitis vinifera]
          Length = 609

 Score =  364 bits (934), Expect = 1e-98
 Identities = 181/270 (67%), Positives = 219/270 (81%), Gaps = 1/270 (0%)
 Frame = -1

Query: 808  LTYNTLVFACVKSRQMDAAMQLFAEMKIEAQKVTFHYLLPDAVTYTTLLKGFSDANDFIS 629
            LTYNTL+FACVK+ ++D AM+ F EMK  AQK     L PDA+TYTTLLKGF  A D +S
Sbjct: 236  LTYNTLIFACVKTEKLDTAMRYFEEMKENAQKTIDVDLFPDAITYTTLLKGFGHAKDLLS 295

Query: 628  VQKLVIEMKSSENLIIDRIAYTAIVDALLICGSTKGALCIFGEILKLTGVHPYLRPKPHL 449
            VQK+V+EMKSS NL +DR AYTAIVDALL CGS+KGALC+FGEI+K  G +  LRPKPHL
Sbjct: 296  VQKIVMEMKSSNNLFVDRTAYTAIVDALLNCGSSKGALCMFGEIIKRAGQNFNLRPKPHL 355

Query: 448  YLSMMRTFALKGDYHMVKSFHARMWPDTSGTISPALQVEADELLMEAAINDGQVDVAREV 269
            Y+SMM   A +GDY++VKS H RM PD++GTISPA+Q+EAD+LLMEAA+NDGQVD A   
Sbjct: 356  YISMMSALAARGDYNLVKSLHKRMRPDSAGTISPAVQIEADQLLMEAALNDGQVDAATHH 415

Query: 268  LSNVNTKWEEISWTSRGSMAAVRVEALSGFS-TMFSPYLLPQVILDGPIKNIMMPFDEAQ 92
            LSN+ T+W+ I W SRG M AVR+EAL GF+ +MFSPYLLPQV    PI+NIMMPF+EA+
Sbjct: 416  LSNIITRWKGICWRSRGGMVAVRLEALLGFTRSMFSPYLLPQVSPADPIENIMMPFEEAR 475

Query: 91   PLHANLYLEKVVMRFFRDAVVPVIDDWGSC 2
            PL A L L++VVMRF++D+VVPVIDDWGSC
Sbjct: 476  PLLATLDLKRVVMRFYKDSVVPVIDDWGSC 505


>ref|XP_002515341.1| pentatricopeptide repeat-containing protein, putative [Ricinus
            communis] gi|223545285|gb|EEF46790.1| pentatricopeptide
            repeat-containing protein, putative [Ricinus communis]
          Length = 600

 Score =  347 bits (889), Expect = 2e-93
 Identities = 173/270 (64%), Positives = 207/270 (76%), Gaps = 1/270 (0%)
 Frame = -1

Query: 808  LTYNTLVFACVKSRQMDAAMQLFAEMKIEAQKVTFHYLLPDAVTYTTLLKGFSDANDFIS 629
            LTYNTL+ ACVKS+ +DAAM  F EMK EA++     L PD VTYTTLLKGF +A D  S
Sbjct: 229  LTYNTLILACVKSKSLDAAMSFFEEMKDEARQTNNVNLYPDVVTYTTLLKGFGNAKDLGS 288

Query: 628  VQKLVIEMKSSENLIIDRIAYTAIVDALLICGSTKGALCIFGEILKLTGVHPYLRPKPHL 449
            V+ +V+EMK   NL IDR  +TA+VDALL  GS KGALCIFGEI+K  GV+P LRPKPHL
Sbjct: 289  VKMIVLEMKLYHNLFIDRTGFTAMVDALLNSGSIKGALCIFGEIIKRAGVNPDLRPKPHL 348

Query: 448  YLSMMRTFALKGDYHMVKSFHARMWPDTSGTISPALQVEADELLMEAAINDGQVDVAREV 269
            YLSMMR FA++GDY MVK+ H R+WPD++GTISPA+Q EAD LLMEAA+N GQVD A E 
Sbjct: 349  YLSMMRAFAVQGDYSMVKNLHKRLWPDSTGTISPAIQQEADHLLMEAALNGGQVDAALEN 408

Query: 268  LSNVNTKWEEISWTSRGSMAAVRVEALSGF-STMFSPYLLPQVILDGPIKNIMMPFDEAQ 92
            L  +  +W  ISWT+RG M AVR+EAL GF  ++FSPYLLPQ+    PI+ IM P +EAQ
Sbjct: 409  LRKIIPRWNGISWTNRGGMVAVRIEALLGFRKSIFSPYLLPQISSSEPIETIMTPLEEAQ 468

Query: 91   PLHANLYLEKVVMRFFRDAVVPVIDDWGSC 2
            PL   L L+KVVMRFFRD VVP++DDWG+C
Sbjct: 469  PLLGTLELKKVVMRFFRDEVVPIMDDWGNC 498


>ref|XP_003545545.1| PREDICTED: pentatricopeptide repeat-containing protein At5g10690-like
            [Glycine max]
          Length = 590

 Score =  338 bits (867), Expect = 8e-91
 Identities = 165/270 (61%), Positives = 207/270 (76%), Gaps = 1/270 (0%)
 Frame = -1

Query: 808  LTYNTLVFACVKSRQMDAAMQLFAEMKIEAQKVTFHYLLPDAVTYTTLLKGFSDANDFIS 629
            LTYNTL+ ACV+S ++DAAMQ F EMK +AQK + H L PD VTYTT+LKGF    D  +
Sbjct: 231  LTYNTLILACVQSGKLDAAMQFFEEMKGKAQKFSNHDLFPDIVTYTTMLKGFGQTKDLAT 290

Query: 628  VQKLVIEMKSSENLIIDRIAYTAIVDALLICGSTKGALCIFGEILKLTGVHPYLRPKPHL 449
            V K+V+EMKS   L IDR AYTAI+DA L CGS KGALCIFGEILK TG++P L+PKPHL
Sbjct: 291  VLKIVLEMKSHRELYIDRTAYTAIIDAFLKCGSVKGALCIFGEILKQTGLNPELKPKPHL 350

Query: 448  YLSMMRTFALKGDYHMVKSFHARMWPDTSGTISPALQVEADELLMEAAINDGQVDVAREV 269
            YLS+MR FA  GDY++VK  H R+WPD++GTI    Q EAD LLMEAA+N GQV+VA + 
Sbjct: 351  YLSLMRAFAFLGDYYLVKKLHKRIWPDSAGTILLVAQEEADHLLMEAALNAGQVNVAVKT 410

Query: 268  LSNVNTKWEEISWTSRGSMAAVRVEALSGFS-TMFSPYLLPQVILDGPIKNIMMPFDEAQ 92
            L+ + +KW+ ISWTSRG M A R+EAL GFS ++FSP+LLPQV    P++N M+ F+  +
Sbjct: 411  LTEIVSKWKGISWTSRGGMVAYRIEALLGFSKSLFSPHLLPQVSPSEPVENYMIQFEATR 470

Query: 91   PLHANLYLEKVVMRFFRDAVVPVIDDWGSC 2
            PL  ++ L KVVMRFF +AVVP++D+WGSC
Sbjct: 471  PLQGSIKLRKVVMRFFYEAVVPIVDEWGSC 500


>ref|XP_003588656.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
            gi|355477704|gb|AES58907.1| Pentatricopeptide
            repeat-containing protein [Medicago truncatula]
          Length = 627

 Score =  335 bits (858), Expect = 9e-90
 Identities = 168/270 (62%), Positives = 201/270 (74%), Gaps = 1/270 (0%)
 Frame = -1

Query: 808  LTYNTLVFACVKSRQMDAAMQLFAEMKIEAQKVTFHYLLPDAVTYTTLLKGFSDANDFIS 629
            LTYNTL+ ACV+S ++D AMQLF EMK +AQ+     L PD VTYTTLLKG   A D +S
Sbjct: 211  LTYNTLILACVQSEKLDVAMQLFGEMKEKAQEFIHDDLFPDIVTYTTLLKGLGQAKDLVS 270

Query: 628  VQKLVIEMKSSENLIIDRIAYTAIVDALLICGSTKGALCIFGEILKLTGVHPYLRPKPHL 449
            V ++V+EMKS   L IDR AYTAIVDALL CGS KGALCIFGEI K  G +P LRPKPHL
Sbjct: 271  VMQIVLEMKSCSQLYIDRTAYTAIVDALLKCGSVKGALCIFGEIQKQVGWNPELRPKPHL 330

Query: 448  YLSMMRTFALKGDYHMVKSFHARMWPDTSGTISPALQVEADELLMEAAINDGQVDVAREV 269
            YLSMMR FA +GDY +VK+ H R+ PDTSGTI P  Q EAD LLMEAA+N GQVDVA + 
Sbjct: 331  YLSMMRAFAFRGDYDLVKNLHKRILPDTSGTILPVSQEEADHLLMEAALNAGQVDVATKT 390

Query: 268  LSNVNTKWEEISWTSRGSMAAVRVEALSGFS-TMFSPYLLPQVILDGPIKNIMMPFDEAQ 92
            L  + ++W+ ISWTS G M A R+EALSGFS ++F+P+LLPQV    PI+  MMPF   +
Sbjct: 391  LMYIVSRWKGISWTSHGGMVASRIEALSGFSASLFNPFLLPQVSPSEPIEGFMMPFKATR 450

Query: 91   PLHANLYLEKVVMRFFRDAVVPVIDDWGSC 2
            PL   + L+ VV RFF DAVVP++D+WGSC
Sbjct: 451  PLLGTIKLKDVVSRFFNDAVVPIVDEWGSC 480