BLASTX nr result

ID: Coptis21_contig00016062 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00016062
         (521 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003530557.1| PREDICTED: ABC transporter B family member 2...   233   9e-60
gb|AAF23176.1|AF216497_1 P-glycoprotein [Gossypium hirsutum]          224   6e-57
ref|XP_002892589.1| P-glycoprotein 10 [Arabidopsis lyrata subsp....   223   1e-56
ref|XP_002277547.1| PREDICTED: ABC transporter B family member 2...   223   1e-56
ref|XP_003612850.1| ABC transporter B family member [Medicago tr...   221   6e-56

>ref|XP_003530557.1| PREDICTED: ABC transporter B family member 2-like [Glycine max]
          Length = 1247

 Score =  233 bits (595), Expect = 9e-60
 Identities = 112/135 (82%), Positives = 126/135 (93%)
 Frame = -3

Query: 405 VPFLKLFSFADSLDCILMAAGSLGACVHGVSVPVFFIFFGKLINVIGIAYLDPSSASHKV 226
           VPFLKLFSFAD  DC+LMA G++GACVHG SVPVFF+FFGK+INVIG+AYL P  ASH+V
Sbjct: 20  VPFLKLFSFADFYDCVLMAIGTVGACVHGASVPVFFVFFGKIINVIGLAYLFPKEASHEV 79

Query: 225 SKYALDFVYLSIAMLFSSWTEVACWMYTGERQASKMRMAYLRSMLNQDISLFDTESSKGE 46
           SKYALDFVYLSIA+LFSSWTEVACWM+TGERQA+KMRMAYLRSMLNQDISLFDTE+S GE
Sbjct: 80  SKYALDFVYLSIAILFSSWTEVACWMHTGERQAAKMRMAYLRSMLNQDISLFDTEASTGE 139

Query: 45  VTAAITSDIIVIQDA 1
           V ++ITSDIIV+QDA
Sbjct: 140 VISSITSDIIVVQDA 154


>gb|AAF23176.1|AF216497_1 P-glycoprotein [Gossypium hirsutum]
          Length = 1249

 Score =  224 bits (571), Expect = 6e-57
 Identities = 109/135 (80%), Positives = 122/135 (90%)
 Frame = -3

Query: 405 VPFLKLFSFADSLDCILMAAGSLGACVHGVSVPVFFIFFGKLINVIGIAYLDPSSASHKV 226
           VP LKLFSFAD  D +LM  GSLGACVHG SVPVFFIFFGKLIN+IG+AYL P  ASHKV
Sbjct: 28  VPLLKLFSFADFYDHVLMGLGSLGACVHGASVPVFFIFFGKLINIIGMAYLFPKEASHKV 87

Query: 225 SKYALDFVYLSIAMLFSSWTEVACWMYTGERQASKMRMAYLRSMLNQDISLFDTESSKGE 46
           +KY+LDFVYLS+A+LFSSW EVACWM+TGERQA+KMRMAYL+SMLNQDISLFDTE+S GE
Sbjct: 88  AKYSLDFVYLSVAILFSSWIEVACWMHTGERQAAKMRMAYLKSMLNQDISLFDTEASTGE 147

Query: 45  VTAAITSDIIVIQDA 1
           V +AITSDIIV+QDA
Sbjct: 148 VISAITSDIIVVQDA 162


>ref|XP_002892589.1| P-glycoprotein 10 [Arabidopsis lyrata subsp. lyrata]
           gi|297338431|gb|EFH68848.1| P-glycoprotein 10
           [Arabidopsis lyrata subsp. lyrata]
          Length = 1229

 Score =  223 bits (569), Expect = 1e-56
 Identities = 106/135 (78%), Positives = 122/135 (90%)
 Frame = -3

Query: 405 VPFLKLFSFADSLDCILMAAGSLGACVHGVSVPVFFIFFGKLINVIGIAYLDPSSASHKV 226
           V FLKLFSFAD  DC+LMA GS+GAC+HG SVPVFFIFFGKLIN+IG+AYL P  ASHKV
Sbjct: 25  VSFLKLFSFADFYDCVLMALGSIGACIHGASVPVFFIFFGKLINIIGLAYLFPQEASHKV 84

Query: 225 SKYALDFVYLSIAMLFSSWTEVACWMYTGERQASKMRMAYLRSMLNQDISLFDTESSKGE 46
           +KY+LDFVYLS+ +LFSSW EVACWM+TGERQA+KMR AYLRSML+QDISLFDTE+S GE
Sbjct: 85  AKYSLDFVYLSVVILFSSWLEVACWMHTGERQAAKMRKAYLRSMLSQDISLFDTETSTGE 144

Query: 45  VTAAITSDIIVIQDA 1
           V +AITSDI+V+QDA
Sbjct: 145 VISAITSDILVVQDA 159


>ref|XP_002277547.1| PREDICTED: ABC transporter B family member 2 [Vitis vinifera]
           gi|297742073|emb|CBI33860.3| unnamed protein product
           [Vitis vinifera]
          Length = 1243

 Score =  223 bits (569), Expect = 1e-56
 Identities = 105/135 (77%), Positives = 124/135 (91%)
 Frame = -3

Query: 405 VPFLKLFSFADSLDCILMAAGSLGACVHGVSVPVFFIFFGKLINVIGIAYLDPSSASHKV 226
           VP LKLF+FAD  DC LMA GS+GAC+HG SVPVFFIFFGKLI++IG+AYL P++ASHKV
Sbjct: 23  VPLLKLFAFADLYDCFLMAVGSVGACIHGASVPVFFIFFGKLIDIIGLAYLFPAAASHKV 82

Query: 225 SKYALDFVYLSIAMLFSSWTEVACWMYTGERQASKMRMAYLRSMLNQDISLFDTESSKGE 46
           +KY+LDFVYLS+ +LFSSW EVACWM+TGERQA+KMRMAY+RSMLNQDISLFDTE++ GE
Sbjct: 83  AKYSLDFVYLSLVILFSSWAEVACWMHTGERQAAKMRMAYVRSMLNQDISLFDTEATTGE 142

Query: 45  VTAAITSDIIVIQDA 1
           V +AITSDIIV+QDA
Sbjct: 143 VISAITSDIIVVQDA 157


>ref|XP_003612850.1| ABC transporter B family member [Medicago truncatula]
           gi|355514185|gb|AES95808.1| ABC transporter B family
           member [Medicago truncatula]
          Length = 1234

 Score =  221 bits (562), Expect = 6e-56
 Identities = 107/135 (79%), Positives = 122/135 (90%)
 Frame = -3

Query: 405 VPFLKLFSFADSLDCILMAAGSLGACVHGVSVPVFFIFFGKLINVIGIAYLDPSSASHKV 226
           V  LKLFSFADS D +LM  GS+GA VHG SVP+FFIFFGKLINVIG+AYL P  ASHKV
Sbjct: 15  VSMLKLFSFADSYDYVLMFIGSIGAIVHGASVPIFFIFFGKLINVIGLAYLFPKEASHKV 74

Query: 225 SKYALDFVYLSIAMLFSSWTEVACWMYTGERQASKMRMAYLRSMLNQDISLFDTESSKGE 46
           +KY+LDFVYLS+A+LFSSWTEVACWM+TGERQA+KMRMAYL+SMLNQDISLFDTE+S GE
Sbjct: 75  AKYSLDFVYLSVAILFSSWTEVACWMHTGERQAAKMRMAYLKSMLNQDISLFDTEASTGE 134

Query: 45  VTAAITSDIIVIQDA 1
           V +AITSDII++QDA
Sbjct: 135 VISAITSDIIIVQDA 149


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