BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00015943
         (465 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAN60229.1| hypothetical protein VITISV_042496 [Vitis vinifera]   114   8e-29
ref|XP_002281628.1| PREDICTED: U3 small nucleolar RNA-interactin...   114   8e-29
ref|XP_002281634.1| PREDICTED: U3 small nucleolar RNA-interactin...   110   1e-27
ref|XP_003547323.1| PREDICTED: U3 small nucleolar RNA-interactin...   114   1e-25
ref|XP_003594504.1| Pre-mRNA-processing factor [Medicago truncat...   113   1e-25

>emb|CAN60229.1| hypothetical protein VITISV_042496 [Vitis vinifera]
          Length = 573

 Score =  114 bits (286), Expect(2) = 8e-29
 Identities = 55/82 (67%), Positives = 68/82 (82%), Gaps = 1/82 (1%)
 Frame = +3

Query: 3   ENGSKKVKSY-CTSALSWVGAVTVCRSSDLAASGAGNGVVRLWTVDSDNKRVQPLYDLPL 179
           ENG+   + Y C++A SWV +VTVCRSSDLAASGA NG VRLW + S+ K ++PL++LPL
Sbjct: 467 ENGNHNHEDYNCSTAYSWVSSVTVCRSSDLAASGAANGSVRLWAIGSETKDIRPLFNLPL 526

Query: 180 AGFVNSLAFAKSGRFLVAGVGQ 245
            GFVNSLAF+KSG+FLVAGVGQ
Sbjct: 527 VGFVNSLAFSKSGQFLVAGVGQ 548



 Score = 37.4 bits (85), Expect(2) = 8e-29
 Identities = 14/21 (66%), Positives = 19/21 (90%)
 Frame = +1

Query: 322 LGRWGRIPASKNGVVLQSLSI 384
           LGRWGR+PA++NGV +QSL +
Sbjct: 552 LGRWGRLPAARNGVAVQSLKL 572


>ref|XP_002281628.1| PREDICTED: U3 small nucleolar RNA-interacting protein 2 isoform 1
           [Vitis vinifera] gi|297740813|emb|CBI30995.3| unnamed
           protein product [Vitis vinifera]
          Length = 519

 Score =  114 bits (286), Expect(2) = 8e-29
 Identities = 55/82 (67%), Positives = 68/82 (82%), Gaps = 1/82 (1%)
 Frame = +3

Query: 3   ENGSKKVKSY-CTSALSWVGAVTVCRSSDLAASGAGNGVVRLWTVDSDNKRVQPLYDLPL 179
           ENG+   + Y C++A SWV +VTVCRSSDLAASGA NG VRLW + S+ K ++PL++LPL
Sbjct: 413 ENGNHNHEDYNCSTAYSWVSSVTVCRSSDLAASGAANGSVRLWAIGSETKDIRPLFNLPL 472

Query: 180 AGFVNSLAFAKSGRFLVAGVGQ 245
            GFVNSLAF+KSG+FLVAGVGQ
Sbjct: 473 VGFVNSLAFSKSGQFLVAGVGQ 494



 Score = 37.4 bits (85), Expect(2) = 8e-29
 Identities = 14/21 (66%), Positives = 19/21 (90%)
 Frame = +1

Query: 322 LGRWGRIPASKNGVVLQSLSI 384
           LGRWGR+PA++NGV +QSL +
Sbjct: 498 LGRWGRLPAARNGVAVQSLKL 518


>ref|XP_002281634.1| PREDICTED: U3 small nucleolar RNA-interacting protein 2 isoform 2
           [Vitis vinifera]
          Length = 500

 Score =  110 bits (276), Expect(2) = 1e-27
 Identities = 51/71 (71%), Positives = 62/71 (87%)
 Frame = +3

Query: 33  CTSALSWVGAVTVCRSSDLAASGAGNGVVRLWTVDSDNKRVQPLYDLPLAGFVNSLAFAK 212
           C++A SWV +VTVCRSSDLAASGA NG VRLW + S+ K ++PL++LPL GFVNSLAF+K
Sbjct: 405 CSTAYSWVSSVTVCRSSDLAASGAANGSVRLWAIGSETKDIRPLFNLPLVGFVNSLAFSK 464

Query: 213 SGRFLVAGVGQ 245
           SG+FLVAGVGQ
Sbjct: 465 SGQFLVAGVGQ 475



 Score = 37.4 bits (85), Expect(2) = 1e-27
 Identities = 14/21 (66%), Positives = 19/21 (90%)
 Frame = +1

Query: 322 LGRWGRIPASKNGVVLQSLSI 384
           LGRWGR+PA++NGV +QSL +
Sbjct: 479 LGRWGRLPAARNGVAVQSLKL 499


>ref|XP_003547323.1| PREDICTED: U3 small nucleolar RNA-interacting protein 2-like
           [Glycine max]
          Length = 457

 Score =  114 bits (285), Expect(2) = 1e-25
 Identities = 56/82 (68%), Positives = 67/82 (81%), Gaps = 1/82 (1%)
 Frame = +3

Query: 3   ENGSKKVKSY-CTSALSWVGAVTVCRSSDLAASGAGNGVVRLWTVDSDNKRVQPLYDLPL 179
           ENG    +++ C S  SWV AV+VCR+SDLAASGAGNG VRLW ++SD K ++ LY++PL
Sbjct: 352 ENGYNHPENHHCLSVFSWVSAVSVCRNSDLAASGAGNGSVRLWEIESDTKDIKSLYNVPL 411

Query: 180 AGFVNSLAFAKSGRFLVAGVGQ 245
           AGFVNSLAFAKSG FLVAGVGQ
Sbjct: 412 AGFVNSLAFAKSGEFLVAGVGQ 433



 Score = 27.3 bits (59), Expect(2) = 1e-25
 Identities = 10/14 (71%), Positives = 12/14 (85%)
 Frame = +1

Query: 322 LGRWGRIPASKNGV 363
           LGRWGR P ++NGV
Sbjct: 437 LGRWGRNPEARNGV 450


>ref|XP_003594504.1| Pre-mRNA-processing factor [Medicago truncatula]
           gi|355483552|gb|AES64755.1| Pre-mRNA-processing factor
           [Medicago truncatula]
          Length = 514

 Score =  113 bits (283), Expect(2) = 1e-25
 Identities = 54/82 (65%), Positives = 69/82 (84%), Gaps = 1/82 (1%)
 Frame = +3

Query: 3   ENGSKKVKSY-CTSALSWVGAVTVCRSSDLAASGAGNGVVRLWTVDSDNKRVQPLYDLPL 179
           ENG    +++ C+S  SWV AVTVCR+SDLAASGAGNG VRLWT++++ K ++PL+++PL
Sbjct: 398 ENGHHHPENHHCSSVHSWVSAVTVCRNSDLAASGAGNGFVRLWTIENETKDIKPLHNVPL 457

Query: 180 AGFVNSLAFAKSGRFLVAGVGQ 245
            GFVNSLAFAKS +FLVAGVGQ
Sbjct: 458 VGFVNSLAFAKSAKFLVAGVGQ 479



 Score = 27.7 bits (60), Expect(2) = 1e-25
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +1

Query: 322 LGRWGRIPASKNGVVLQSLSI 384
           LGRWGRI  ++NGV +  L +
Sbjct: 493 LGRWGRIREARNGVSILPLKL 513