BLASTX nr result

ID: Coptis21_contig00015425 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00015425
         (284 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002333910.1| predicted protein [Populus trichocarpa] gi|2...    57   2e-06
ref|XP_002327345.1| predicted protein [Populus trichocarpa] gi|2...    57   2e-06
ref|XP_002310987.1| predicted protein [Populus trichocarpa] gi|2...    55   4e-06
ref|XP_002510983.1| conserved hypothetical protein [Ricinus comm...    55   6e-06

>ref|XP_002333910.1| predicted protein [Populus trichocarpa] gi|222838910|gb|EEE77261.1|
           predicted protein [Populus trichocarpa]
          Length = 391

 Score = 56.6 bits (135), Expect = 2e-06
 Identities = 40/107 (37%), Positives = 58/107 (54%), Gaps = 17/107 (15%)
 Frame = +3

Query: 15  FYVCNPSTEQYIAIPNCPRSRLTPLDGALFFD----PHFKVVN---ISRSRSHP-RLNIF 170
           ++VCN +T Q +AIPN PR R  P   A+ +D    PH+KVV    +    S P +L+IF
Sbjct: 129 YFVCNTTTRQCVAIPN-PRPRTAPFAAAIAYDPAKSPHYKVVRFIYLEEKTSCPVKLDIF 187

Query: 171 SQATGQW----SVYNIDLDPCVSD-----CFWSPRFVFLDGSLYKLS 284
           S  TG+W     + + +L    +D     C    R ++LDG +YKLS
Sbjct: 188 SSDTGKWVRRGVMLSTELPLAAADADKYGCI--RRSIYLDGMIYKLS 232


>ref|XP_002327345.1| predicted protein [Populus trichocarpa] gi|222835715|gb|EEE74150.1|
           predicted protein [Populus trichocarpa]
          Length = 391

 Score = 56.6 bits (135), Expect = 2e-06
 Identities = 40/107 (37%), Positives = 58/107 (54%), Gaps = 17/107 (15%)
 Frame = +3

Query: 15  FYVCNPSTEQYIAIPNCPRSRLTPLDGALFFD----PHFKVVN---ISRSRSHP-RLNIF 170
           ++VCN +T Q +AIPN PR R  P   A+ +D    PH+KVV    +    S P +L+IF
Sbjct: 129 YFVCNTTTRQCVAIPN-PRPRTAPFAAAIAYDPAKSPHYKVVRFIYLEEKTSCPVKLDIF 187

Query: 171 SQATGQW----SVYNIDLDPCVSD-----CFWSPRFVFLDGSLYKLS 284
           S  TG+W     + + +L    +D     C    R ++LDG +YKLS
Sbjct: 188 SSDTGKWVRRGVMLSTELPLAAADADKYGCI--RRSIYLDGMIYKLS 232


>ref|XP_002310987.1| predicted protein [Populus trichocarpa] gi|222850807|gb|EEE88354.1|
           predicted protein [Populus trichocarpa]
          Length = 396

 Score = 55.5 bits (132), Expect = 4e-06
 Identities = 35/99 (35%), Positives = 50/99 (50%), Gaps = 6/99 (6%)
 Frame = +3

Query: 6   SMQFYVCNPSTEQYIAIPNCPRSRLTPLDGALFFD----PHFKVVNISRSRSHP--RLNI 167
           ++Q+YVCNP+T+  +AIP         +  AL FD    PH++VV    S S P  RL +
Sbjct: 138 TLQYYVCNPATKHCVAIPR-DFMLENIIFAALAFDPSTSPHYRVVCFDYSESRPPVRLQV 196

Query: 168 FSQATGQWSVYNIDLDPCVSDCFWSPRFVFLDGSLYKLS 284
           FS  TG W+            C      ++LDG+LY +S
Sbjct: 197 FSSETGNWTGNETPFGYSNKKCKVVKHCIYLDGALYCIS 235


>ref|XP_002510983.1| conserved hypothetical protein [Ricinus communis]
           gi|223550098|gb|EEF51585.1| conserved hypothetical
           protein [Ricinus communis]
          Length = 323

 Score = 55.1 bits (131), Expect = 6e-06
 Identities = 35/98 (35%), Positives = 58/98 (59%), Gaps = 7/98 (7%)
 Frame = +3

Query: 12  QFYVCNPSTEQYIAIPNC-PRSRLTPL--DGALFFDP----HFKVVNISRSRSHPRLNIF 170
           ++ VCNP T+QY+++    PR+++T L  + AL FDP    H+KVV +  SR++ RL +F
Sbjct: 105 EYVVCNPVTKQYVSLKLLVPRNQVTGLLINAALAFDPSISPHYKVV-LFDSRNN-RLLVF 162

Query: 171 SQATGQWSVYNIDLDPCVSDCFWSPRFVFLDGSLYKLS 284
           S  +  W+    +L   +S   W    ++  G++YKLS
Sbjct: 163 SSKSWSWNPLKYELQDVLSILRWDKESIYFCGAIYKLS 200


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