BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00015415
         (1369 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004134132.1| PREDICTED: parafibromin-like [Cucumis sativu...   509   e-142
ref|XP_002282888.1| PREDICTED: parafibromin-like [Vitis vinifera]     496   e-138
ref|NP_188898.1| RNA pol II accessory factor CDC73-like protein ...   460   e-127
ref|XP_002883372.1| predicted protein [Arabidopsis lyrata subsp....   458   e-126
ref|XP_002315762.1| PAF1 complex component [Populus trichocarpa]...   457   e-126

>ref|XP_004134132.1| PREDICTED: parafibromin-like [Cucumis sativus]
            gi|449513423|ref|XP_004164322.1| PREDICTED:
            parafibromin-like [Cucumis sativus]
          Length = 407

 Score =  509 bits (1311), Expect = e-142
 Identities = 264/369 (71%), Positives = 295/369 (79%), Gaps = 12/369 (3%)
 Frame = -1

Query: 1369 TAYRSKQGNLYTLETLVYYVKNHTVKHTEYLQNARLQKLPAVTLPDRKPLLEYLQGKVLS 1190
            TAYRSKQGNLYTLETLVYY+KNH VKHTEYLQNAR Q + +VT PDRKPLL+YL GKV S
Sbjct: 40   TAYRSKQGNLYTLETLVYYIKNHHVKHTEYLQNARTQGITSVTFPDRKPLLDYLTGKVSS 99

Query: 1189 NDAIEFXXXXXXXXXV----EEYMPDNPGFRDGG-DAGKEEDKLEVTESVADYVLKIKGM 1025
            +DAIEF              +EY P++P       DA  E+D  + + +V DY+  I+ +
Sbjct: 100  SDAIEFLVPQNPKFPDLPSVDEYRPEDPVIVGAAMDAVDEDDGFKDSTNV-DYMTMIRAI 158

Query: 1024 ERPLRDREALLECRDCDFHTAXXXXXXXXXXXXXXXXXXXKDGLVAKSRLMGSD------ 863
            ERPL+DRE+LLEC++ +F+                     KDGLVAKSRLMGSD      
Sbjct: 159  ERPLKDRESLLECKNRNFYNVLVMSTKREEERQRLESQQRKDGLVAKSRLMGSDDRGLVG 218

Query: 862  -GDDLGYDMAPKPKMNFKGSKIGEGVPIILVPSASQTLITIYNVKEFLEDGVFIPTDVKV 686
             GDDLGYD  PKPKM+ KG KIGEGVPIILVPSA QTLITIYNVKEFLEDGVFIPTDVKV
Sbjct: 219  YGDDLGYDANPKPKMHLKGGKIGEGVPIILVPSAFQTLITIYNVKEFLEDGVFIPTDVKV 278

Query: 685  KQMKGARPDCITVQKKFSRDRERVVSAYEVRDKPSALKAEDWARVVAVFVLGKEWQFKDW 506
            KQMKGARPDC+TVQKKFSRDR+RVV+AYEVRDKPSALK+EDW RVVAVFVLGKEWQFKDW
Sbjct: 279  KQMKGARPDCVTVQKKFSRDRDRVVTAYEVRDKPSALKSEDWDRVVAVFVLGKEWQFKDW 338

Query: 505  PYKDHVEIFNKVIGFFMRFEDDSVESAKNVKQWNVKIISISKNKRHQDRAAALEVWDRLE 326
            P+KDHVEIFNK+IGF+MRFEDDS+ESAKNVKQWNVKIISISKNKRHQDRAAALEVWDRLE
Sbjct: 339  PFKDHVEIFNKIIGFYMRFEDDSLESAKNVKQWNVKIISISKNKRHQDRAAALEVWDRLE 398

Query: 325  EFVRSRSHT 299
            EFVRSRSH+
Sbjct: 399  EFVRSRSHS 407


>ref|XP_002282888.1| PREDICTED: parafibromin-like [Vitis vinifera]
          Length = 413

 Score =  496 bits (1278), Expect = e-138
 Identities = 263/376 (69%), Positives = 286/376 (76%), Gaps = 19/376 (5%)
 Frame = -1

Query: 1369 TAYRSKQGNLYTLETLVYYVKNHTVKHTEYLQNARLQKLPAVTLPDRKPLLEYLQGKVLS 1190
            TAYRSKQGNLYTLETLVYYVKNH +KHTEYLQ+AR Q++PAVTLPDRKPLLEYLQGKV S
Sbjct: 40   TAYRSKQGNLYTLETLVYYVKNHHIKHTEYLQSARTQRIPAVTLPDRKPLLEYLQGKVAS 99

Query: 1189 NDAIEFXXXXXXXXXV------EEYMPDNPGFRDGGDAGKEEDKLEVTE----SVADYVL 1040
             DAIEF                +EY P++P      D    ED L+ +        DY+ 
Sbjct: 100  TDAIEFVVPQNPKIPDIGVDAVDEYRPEDPTLLAIRDPPGSEDALDNSRVRGFDNVDYIS 159

Query: 1039 KIKGMERPLRDREALLECRDCDFHTAXXXXXXXXXXXXXXXXXXXKDGLVAKSRLMGSD- 863
             I+  ERPL+DRE+LLEC+  DF++                    KDGLVAKSRLMG+D 
Sbjct: 160  MIRASERPLKDRESLLECKQRDFYSVLMASTRREEERHRLESHQRKDGLVAKSRLMGADE 219

Query: 862  --------GDDLGYDMAPKPKMNFKGSKIGEGVPIILVPSASQTLITIYNVKEFLEDGVF 707
                    GD+LGYD  PKPKM    SKIGEGVPIILVPSA QTLITIYNVKEFLEDGVF
Sbjct: 220  RGLGFWKDGDELGYDGTPKPKMLLNRSKIGEGVPIILVPSAFQTLITIYNVKEFLEDGVF 279

Query: 706  IPTDVKVKQMKGARPDCITVQKKFSRDRERVVSAYEVRDKPSALKAEDWARVVAVFVLGK 527
            IPTDVK KQMKGA+PDC+TVQKKFSRDR  VV AYEVRDKPSALK EDW RVVAVFVLGK
Sbjct: 280  IPTDVKAKQMKGAKPDCVTVQKKFSRDR--VVMAYEVRDKPSALKTEDWDRVVAVFVLGK 337

Query: 526  EWQFKDWPYKDHVEIFNKVIGFFMRFEDDSVESAKNVKQWNVKIISISKNKRHQDRAAAL 347
            EWQFKDWP+KDHVEIFNK+IGF+MRFEDDSVESAK VKQWNVKIISISKNKRHQDRAAAL
Sbjct: 338  EWQFKDWPFKDHVEIFNKIIGFYMRFEDDSVESAKIVKQWNVKIISISKNKRHQDRAAAL 397

Query: 346  EVWDRLEEFVRSRSHT 299
            EVWDRLEEFVRSRSHT
Sbjct: 398  EVWDRLEEFVRSRSHT 413


>ref|NP_188898.1| RNA pol II accessory factor CDC73-like protein [Arabidopsis thaliana]
            gi|11994291|dbj|BAB01474.1| unnamed protein product
            [Arabidopsis thaliana] gi|17529302|gb|AAL38878.1| unknown
            protein [Arabidopsis thaliana] gi|23296828|gb|AAN13180.1|
            unknown protein [Arabidopsis thaliana]
            gi|332643135|gb|AEE76656.1| RNA pol II accessory factor
            CDC73-like protein [Arabidopsis thaliana]
          Length = 415

 Score =  460 bits (1184), Expect = e-127
 Identities = 238/376 (63%), Positives = 280/376 (74%), Gaps = 19/376 (5%)
 Frame = -1

Query: 1369 TAYRSKQGNLYTLETLVYYVKNHTVKHTEYLQNARLQKLPAVTLPDRKPLLEYLQGKVLS 1190
            TAYRSK G+LYTLE LV+YVKN  +KH EY+Q+     +PAVTLPDRKPLL+YL G+V S
Sbjct: 40   TAYRSKSGSLYTLEALVHYVKNQQLKHGEYMQSTVKNSVPAVTLPDRKPLLDYLTGRVAS 99

Query: 1189 NDAIEFXXXXXXXXXV----EEYMPD--NPGF--RDGGDAGKEEDKLEVTESVADYVLKI 1034
            +D+I+F              EEY PD  N  F  R+   A  E +    +    DY++ I
Sbjct: 100  SDSIDFLLLQQQNAQSQKQNEEYRPDQDNSAFVSRENAIADMEVEDFGKSGEDVDYIMLI 159

Query: 1033 KGMERPLRDREALLECRDCDFHTAXXXXXXXXXXXXXXXXXXXKDGLVAKSRLMGSD--- 863
            +  ERPL+ R+A+L+C++ DF++                    KDGLVAKSRLMG++   
Sbjct: 160  RSNERPLKSRDAILQCKNRDFYSVLVNSTKREEERQRIESHQRKDGLVAKSRLMGAEERG 219

Query: 862  --------GDDLGYDMAPKPKMNFKGSKIGEGVPIILVPSASQTLITIYNVKEFLEDGVF 707
                    GDD GYD  PK K++FK  KIGEGVPIILVPSA QTLITIYNVKEFLEDGV+
Sbjct: 220  IVGFSSGGGDDNGYDANPKSKLHFKAGKIGEGVPIILVPSAFQTLITIYNVKEFLEDGVY 279

Query: 706  IPTDVKVKQMKGARPDCITVQKKFSRDRERVVSAYEVRDKPSALKAEDWARVVAVFVLGK 527
            IP DVK K+MKG +PDCITVQKKFSRDRERVV+AYEVRDKPSALK +DW RVVAVFVLGK
Sbjct: 280  IPNDVKAKEMKGLKPDCITVQKKFSRDRERVVTAYEVRDKPSALKPDDWDRVVAVFVLGK 339

Query: 526  EWQFKDWPYKDHVEIFNKVIGFFMRFEDDSVESAKNVKQWNVKIISISKNKRHQDRAAAL 347
            +WQFKDWP+KDHVEIFNK+IGFF+RFEDDS+ESAK VKQWNVKIISISKNKRHQDRAAAL
Sbjct: 340  DWQFKDWPFKDHVEIFNKIIGFFLRFEDDSIESAKTVKQWNVKIISISKNKRHQDRAAAL 399

Query: 346  EVWDRLEEFVRSRSHT 299
            EVW++LEEFVRSRSH+
Sbjct: 400  EVWEKLEEFVRSRSHS 415


>ref|XP_002883372.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
            gi|297329212|gb|EFH59631.1| predicted protein
            [Arabidopsis lyrata subsp. lyrata]
          Length = 414

 Score =  458 bits (1179), Expect = e-126
 Identities = 236/375 (62%), Positives = 280/375 (74%), Gaps = 18/375 (4%)
 Frame = -1

Query: 1369 TAYRSKQGNLYTLETLVYYVKNHTVKHTEYLQNARLQKLPAVTLPDRKPLLEYLQGKVLS 1190
            TAYRSK G+LYTLE LV+YVKN  +KH EY+Q+     +PAVTLPDRKPLL+YL G+V S
Sbjct: 40   TAYRSKSGSLYTLEALVHYVKNQHLKHGEYMQSTVKNSVPAVTLPDRKPLLDYLTGRVAS 99

Query: 1189 NDAIEFXXXXXXXXXV----EEYMPD--NPGF--RDGGDAGKEEDKLEVTESVADYVLKI 1034
            +D+I++              EEY PD  N  F  R+      E +    +    DY++ I
Sbjct: 100  SDSIDYLLLQQQNAQSQKQNEEYRPDQDNSAFVSRENAIEDMEVEDFGKSGEDVDYIMLI 159

Query: 1033 KGMERPLRDREALLECRDCDFHTAXXXXXXXXXXXXXXXXXXXKDGLVAKSRLMGSD--- 863
            +  ERPL+ R+A+L+C++ DF++                    KDGLVAKSRLMG++   
Sbjct: 160  RSNERPLKSRDAILQCKNRDFYSVLVNSTKREEERQRIESHQRKDGLVAKSRLMGAEERG 219

Query: 862  -------GDDLGYDMAPKPKMNFKGSKIGEGVPIILVPSASQTLITIYNVKEFLEDGVFI 704
                   GDD GYD  PK K++F+  KIGEGVPIILVPSASQTLITIYNVKEFLEDGV+I
Sbjct: 220  IVGFSGGGDDNGYDANPKSKLHFRAGKIGEGVPIILVPSASQTLITIYNVKEFLEDGVYI 279

Query: 703  PTDVKVKQMKGARPDCITVQKKFSRDRERVVSAYEVRDKPSALKAEDWARVVAVFVLGKE 524
            P DVK K+MKG +PDCITVQKKFSRDRERVV+AYEVRDKPSALK +DW RVVAVFVLGK+
Sbjct: 280  PNDVKAKEMKGLKPDCITVQKKFSRDRERVVTAYEVRDKPSALKPDDWDRVVAVFVLGKD 339

Query: 523  WQFKDWPYKDHVEIFNKVIGFFMRFEDDSVESAKNVKQWNVKIISISKNKRHQDRAAALE 344
            WQFKDWP+KDHVEIFNK+IGFF+RFEDDS+ESAK VKQWNVKIISISKNKRHQDRAAALE
Sbjct: 340  WQFKDWPFKDHVEIFNKIIGFFLRFEDDSIESAKTVKQWNVKIISISKNKRHQDRAAALE 399

Query: 343  VWDRLEEFVRSRSHT 299
            VW++LEEFVRSRSH+
Sbjct: 400  VWEKLEEFVRSRSHS 414


>ref|XP_002315762.1| PAF1 complex component [Populus trichocarpa]
            gi|222864802|gb|EEF01933.1| PAF1 complex component
            [Populus trichocarpa]
          Length = 405

 Score =  457 bits (1177), Expect = e-126
 Identities = 242/366 (66%), Positives = 272/366 (74%), Gaps = 9/366 (2%)
 Frame = -1

Query: 1369 TAYRSKQGNLYTLETLVYYVKNHTVKHTEYLQNARLQKLPAVTLPDRKPLLEYLQGKVLS 1190
            TAYRSKQGNLYTLETLVY ++N  +K T YLQ+A    +P VT  D KP+ EYL GK+ S
Sbjct: 40   TAYRSKQGNLYTLETLVYCIQNTKIKFTNYLQDALALGIPPVTYIDWKPVKEYLSGKLSS 99

Query: 1189 NDAIEFXXXXXXXXXVEEYMPDNPGFRDGG-DAGKEEDKLEV-TESVADYVLKIKGMERP 1016
             D+I F            Y PD+P   D   D     DK+    E V ++V  I   ERP
Sbjct: 100  TDSIVFPLPQESQNPNLNYRPDDPMLLDSRIDDSAAADKVNNGNEGVENHVSLIYANERP 159

Query: 1015 LRDREALLECRDCDFHTAXXXXXXXXXXXXXXXXXXXKDGLVAKSRLMGSD-------GD 857
            L+DRE+LLEC++ DF+                     KDGLVAKSRLMG+D       GD
Sbjct: 160  LKDRESLLECKNRDFYGVLVASTRREEERHKFESQQRKDGLVAKSRLMGTDERGIGYGGD 219

Query: 856  DLGYDMAPKPKMNFKGSKIGEGVPIILVPSASQTLITIYNVKEFLEDGVFIPTDVKVKQM 677
            +LGYD A KPKM+ KG KIGEGVPIILVPSA QTLITIYNVKEFLEDG+FIPTDVK KQM
Sbjct: 220  ELGYDSAAKPKMHSKGGKIGEGVPIILVPSAFQTLITIYNVKEFLEDGIFIPTDVKAKQM 279

Query: 676  KGARPDCITVQKKFSRDRERVVSAYEVRDKPSALKAEDWARVVAVFVLGKEWQFKDWPYK 497
            KG +P+C+TVQKKFS DR RV++AYEVRDKPSALK +DW RVVAVFVLGKEWQFKDWP+K
Sbjct: 280  KGPKPECVTVQKKFSTDRNRVMTAYEVRDKPSALKGDDWDRVVAVFVLGKEWQFKDWPFK 339

Query: 496  DHVEIFNKVIGFFMRFEDDSVESAKNVKQWNVKIISISKNKRHQDRAAALEVWDRLEEFV 317
            DHVEIFNK+IGFFMRFEDDSVESAK VKQWNVKIISISKNKRHQDRAAALEVWDRLEEFV
Sbjct: 340  DHVEIFNKIIGFFMRFEDDSVESAKIVKQWNVKIISISKNKRHQDRAAALEVWDRLEEFV 399

Query: 316  RSRSHT 299
            RS+SHT
Sbjct: 400  RSQSHT 405