BLASTX nr result
ID: Coptis21_contig00015303
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis21_contig00015303
(1751 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002331075.1| predicted protein [Populus trichocarpa] gi|2... 50 7e-25
gb|EEC72938.1| hypothetical protein OsI_06800 [Oryza sativa Indi... 45 8e-18
emb|CAN77987.1| hypothetical protein VITISV_015002 [Vitis vinifera] 47 3e-17
gb|AAD37021.1| putative non-LTR retrolelement reverse transcript... 64 4e-17
gb|AAG51783.1|AC079679_3 reverse transcriptase, putative; 16838-... 47 1e-14
>ref|XP_002331075.1| predicted protein [Populus trichocarpa] gi|222873039|gb|EEF10170.1|
predicted protein [Populus trichocarpa]
Length = 517
Score = 50.4 bits (119), Expect(4) = 7e-25
Identities = 28/94 (29%), Positives = 47/94 (50%), Gaps = 4/94 (4%)
Frame = -3
Query: 1554 KVCKPTAEVGLGIRKVREMNKAMLMKMVWNIINGE--CDFATFVQCKYLNQER--AIITY 1387
+VC P E GLGI+ ++E NK L+K +WN+ N ++T+++ L I T
Sbjct: 151 QVCLPKKEGGLGIKSIKEWNKIALLKHIWNLCNDSDGSIWSTWIRSNLLRGRNFWTIKTP 210
Query: 1386 YRPTSTWTGIKQAMEEVKPRTHWIVGNGLKIDLW 1285
+ W I + P+ +I+G+G+ LW
Sbjct: 211 QNCSWAWGKILKLRSLAWPKMKYIIGDGMTTSLW 244
Score = 47.4 bits (111), Expect(4) = 7e-25
Identities = 25/79 (31%), Positives = 40/79 (50%)
Frame = -1
Query: 1214 SATLNMVIHGSEYVVPPDLELLLAEHDASIAALPKPNSGEKDELIWKPDLKGTFSVKSAF 1035
+A +N++I SE+ P + +I + P G+KDEL+W FSVK A+
Sbjct: 271 NAKVNVLIQNSEWKTPTTQAIGWHPIIEAIPSNSNPKMGQKDELVWLDSPNHRFSVKVAW 330
Query: 1034 EEIRRKMPELNWCKLNWSK 978
E++RR + W + W K
Sbjct: 331 EQLRRHRQMVEWHDIVWFK 349
Score = 42.7 bits (99), Expect(4) = 7e-25
Identities = 16/53 (30%), Positives = 31/53 (58%)
Frame = -3
Query: 963 SVSLWKLNHNCVATQELVKKKGVHLAARCSVCRMDDEDLDHILWKCTFAQHFW 805
S LW + TQ+ + + G+H RCS+C ++ED +H+ ++C++ + W
Sbjct: 356 SFLLWMAVQQKLTTQDKLHRFGIHGPNRCSLCLRNNEDHNHLFFECSYTKAIW 408
Score = 41.2 bits (95), Expect(4) = 7e-25
Identities = 21/51 (41%), Positives = 32/51 (62%)
Frame = -1
Query: 1745 WRGRLLSLQGRCVMINAVLCSIPSHNMAIYKWLMSVIKEEEKMIRNFLWSG 1593
W R LS GR +IN+VL SI + +++ VIK E+++++FLWSG
Sbjct: 87 WTCRTLSYAGRVQLINSVLFSIQVYWASLFLLPGQVIKNVEQIMKSFLWSG 137
>gb|EEC72938.1| hypothetical protein OsI_06800 [Oryza sativa Indica Group]
Length = 556
Score = 45.4 bits (106), Expect(4) = 8e-18
Identities = 21/58 (36%), Positives = 36/58 (62%)
Frame = -1
Query: 1745 WRGRLLSLQGRCVMINAVLCSIPSHNMAIYKWLMSVIKEEEKMIRNFLWSGDPNVRKS 1572
W +LLS G+ ++I AVL ++P + M ++K SV +E K++RNF W + R++
Sbjct: 186 WGEKLLSTGGKEILIKAVLQAMPVYVMGLFKLPESVYEELTKLVRNFWWGAEKGKRRT 243
Score = 43.9 bits (102), Expect(4) = 8e-18
Identities = 24/85 (28%), Positives = 41/85 (48%), Gaps = 3/85 (3%)
Frame = -3
Query: 1527 GLGIRKVREMNKAMLMKMVWNIINGECDF-ATFVQCKYLNQERAIITYYRPTST--WTGI 1357
G+G R R N+A+L + W +++ A ++ KY I T + ++ W I
Sbjct: 259 GMGFRDFRLFNQALLARQAWRLLDRPDSLCARILKAKYYPNGSLIDTSFGGNASPGWRAI 318
Query: 1356 KQAMEEVKPRTHWIVGNGLKIDLWR 1282
+ +E +K W +GNG + LWR
Sbjct: 319 EYGLELLKKGIIWRIGNGKSVRLWR 343
Score = 40.4 bits (93), Expect(4) = 8e-18
Identities = 17/58 (29%), Positives = 33/58 (56%)
Frame = -3
Query: 951 WKLNHNCVATQELVKKKGVHLAARCSVCRMDDEDLDHILWKCTFAQHFWTWLTHFFKI 778
W+ N + T E KK+ + ++ C++C ++ E + H L++C A+ FW +T K+
Sbjct: 465 WRAITNSLPTLENKKKRKLEVSDICTICGVESEYVVHALFRCPHARQFWEAMTVDMKL 522
Score = 27.7 bits (60), Expect(4) = 8e-18
Identities = 17/50 (34%), Positives = 25/50 (50%)
Frame = -1
Query: 1184 SEYVVPPDLELLLAEHDASIAALPKPNSGEKDELIWKPDLKGTFSVKSAF 1035
S++ +P D E +L +S E D + W PD G FSV+SA+
Sbjct: 383 SQHFLPMDAEAILNIRLSSRL--------EDDFIAWHPDRLGRFSVRSAY 424
>emb|CAN77987.1| hypothetical protein VITISV_015002 [Vitis vinifera]
Length = 839
Score = 47.4 bits (111), Expect(4) = 3e-17
Identities = 24/110 (21%), Positives = 54/110 (49%), Gaps = 4/110 (3%)
Frame = -3
Query: 951 WKLNHNCVATQELVKKKGVHLAARCSVCRMDDEDLDHILWKCTFAQHFWTWLTHFFKIRY 772
W+ N + T + +K+ G ++ RC +C+ ++E +DH+L C A+ W F +++
Sbjct: 607 WEAAWNRLLTTDRLKRFGWNIPNRCFLCKNEEESIDHLLLFCEKARMLWYLTFSLFGVQW 666
Query: 771 QFHNFMEAYIVGKH*TLF----*RICGAXXXXXXXXLWKHRNKLHFDEIK 634
H+ ++ ++G + + + +WK RN+ FD+++
Sbjct: 667 VMHSSVKRNLLGWYGSFVGKKREKAWKTAPLCLMWTIWKERNRRAFDDVE 716
Score = 43.1 bits (100), Expect(4) = 3e-17
Identities = 28/108 (25%), Positives = 48/108 (44%), Gaps = 6/108 (5%)
Frame = -3
Query: 1581 EKKCHRKIGKV-CKPTAEVGLGIRKVREMNKAMLMKMVWNIIN-GECDFATFVQCKYLNQ 1408
E K H KV C + GLGIR + NKA+L K +W N + + + KY Q
Sbjct: 380 ENKPHLVCWKVICAAKKDGGLGIRNLAIFNKALLGKWLWRFANENDSLWKQIISSKYDLQ 439
Query: 1407 ERAIITY----YRPTSTWTGIKQAMEEVKPRTHWIVGNGLKIDLWRPM 1276
+ + W I+ E+ + + ++VG+G ++ W+ +
Sbjct: 440 DGGWCSKGGRDRYGVGVWKAIRNGWEDFRSHSRFLVGDGTRVKFWKDL 487
Score = 37.7 bits (86), Expect(4) = 3e-17
Identities = 17/53 (32%), Positives = 31/53 (58%)
Frame = -1
Query: 1751 SSWRGRLLSLQGRCVMINAVLCSIPSHNMAIYKWLMSVIKEEEKMIRNFLWSG 1593
S W+ + LS GR ++ + L S+P++ ++++ V EK+ R+FLW G
Sbjct: 324 SLWKRQYLSKGGRLTLLKSTLSSLPTYFLSLFVIPKRVCARLEKIQRDFLWGG 376
Score = 27.3 bits (59), Expect(4) = 3e-17
Identities = 30/127 (23%), Positives = 48/127 (37%), Gaps = 15/127 (11%)
Frame = -1
Query: 1283 DQWINGQSLQQ----ILNLT---------AFQLTGCSATLN--MVIHGSEYVVPPDLELL 1149
D W QSL++ + NL+ A++ G + + H +++ V LL
Sbjct: 486 DLWCENQSLEEAFPILFNLSVNKEGLVAEAWEEDGAGGSWGPRFIRHLNDWEVGEVENLL 545
Query: 1148 LAEHDASIAALPKPNSGEKDELIWKPDLKGTFSVKSAFEEIRRKMPELNWCKLNWSKCIH 969
H +I G D L WK + GTFSVK + + + W
Sbjct: 546 SKLHPLAI------RRGVDDSLRWKANKNGTFSVKCFYSSLSMGINHPFPVSTIWKSWAP 599
Query: 968 SQVSAFG 948
++ S FG
Sbjct: 600 TRASFFG 606
>gb|AAD37021.1| putative non-LTR retrolelement reverse transcriptase [Arabidopsis
thaliana]
Length = 732
Score = 64.3 bits (155), Expect(2) = 4e-17
Identities = 38/102 (37%), Positives = 57/102 (55%), Gaps = 6/102 (5%)
Frame = -3
Query: 1554 KVCKPTAEVGLGIRKVREMNKAMLMKMVWNIING-ECDFATFVQCKYLNQERAIITYYRP 1378
+VCKP +E GLGIRK ++MNKA+L K+ W +I +A ++C Y Q+ + +
Sbjct: 368 RVCKPRSEGGLGIRKAQDMNKALLSKVGWRLIQDYHSLWARIMRCNYRVQDVRDGAWTKV 427
Query: 1377 ----TSTWTGIKQAMEEVK-PRTHWIVGNGLKIDLWRPMD*W 1267
+STW + M EV P W++G+G +I W MD W
Sbjct: 428 RSVCSSTWRSVALGMREVVIPGLSWVIGDGREILFW--MDKW 467
Score = 51.6 bits (122), Expect(2) = 4e-17
Identities = 26/72 (36%), Positives = 37/72 (51%)
Frame = -1
Query: 1751 SSWRGRLLSLQGRCVMINAVLCSIPSHNMAIYKWLMSVIKEEEKMIRNFLWSGDPNVRKS 1572
+ W+GR LSL GR + AVL SIP H M+ S + +K+ R+FLW RK
Sbjct: 302 AGWKGRFLSLAGRVTLTKAVLSSIPVHTMSTIALPKSTLDGLDKVSRSFLWGSSVTQRKQ 361
Query: 1571 VTVK*ERYVNPQ 1536
+ +R P+
Sbjct: 362 HLISWKRVCKPR 373
>gb|AAG51783.1|AC079679_3 reverse transcriptase, putative; 16838-20266 [Arabidopsis thaliana]
Length = 1142
Score = 46.6 bits (109), Expect(4) = 1e-14
Identities = 32/106 (30%), Positives = 49/106 (46%), Gaps = 3/106 (2%)
Frame = -3
Query: 1554 KVCKPTAEVGLGIRKVREMNKAMLMKMVWNIING-ECDFATFVQCKYLNQERAI--ITYY 1384
K+C ++ GLG R V + N A+L K +W +I + FA + +Y + + I Y
Sbjct: 627 KLCSSKSDGGLGFRNVDDFNSALLAKQLWRLITAPDSLFAKVFKGRYFRKSNPLDSIKSY 686
Query: 1383 RPTSTWTGIKQAMEEVKPRTHWIVGNGLKIDLWRPMD*WPVPATNP 1246
P+ W + A V VG+G I +W D W +PA P
Sbjct: 687 SPSYGWRSMISARSLVYKGLIKRVGSGASISVWN--DPW-IPAQFP 729
Score = 39.7 bits (91), Expect(4) = 1e-14
Identities = 15/50 (30%), Positives = 27/50 (54%)
Frame = -3
Query: 954 LWKLNHNCVATQELVKKKGVHLAARCSVCRMDDEDLDHILWKCTFAQHFW 805
LW++ CV E ++K+G+ C C +E ++H L++C A+ W
Sbjct: 841 LWQILSGCVPVSENLRKRGILCDKGCVSCGASEESINHTLFQCHPARQIW 890
Score = 32.7 bits (73), Expect(4) = 1e-14
Identities = 14/58 (24%), Positives = 30/58 (51%)
Frame = -1
Query: 1751 SSWRGRLLSLQGRCVMINAVLCSIPSHNMAIYKWLMSVIKEEEKMIRNFLWSGDPNVR 1578
+ W + LS G+ VMI +V ++P + M+ ++ ++ + + F WS + + R
Sbjct: 561 NGWSAKFLSKGGKEVMIKSVAATLPRYVMSCFRLPKAITSKLTSAVAKFWWSSNGDSR 618
Score = 27.3 bits (59), Expect(4) = 1e-14
Identities = 17/50 (34%), Positives = 23/50 (46%)
Frame = -1
Query: 1157 ELLLAEHDASIAALPKPNSGEKDELIWKPDLKGTFSVKSAFEEIRRKMPE 1008
EL E I+ALP N +D L W G ++VKS + R + E
Sbjct: 763 ELFDPEDVPLISALPIGNPNMEDTLGWHFTKAGNYTVKSGYHTARLDLNE 812