BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00015248
         (360 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAN66619.1| hypothetical protein VITISV_028369 [Vitis vinifera]    81   1e-13
ref|XP_002278547.2| PREDICTED: F-box protein SKIP23-like [Vitis ...    79   4e-13
ref|XP_002279526.2| PREDICTED: LOW QUALITY PROTEIN: F-box protei...    73   2e-11
ref|XP_003599226.1| F-box protein [Medicago truncatula] gi|35548...    72   4e-11
ref|XP_002313690.1| f-box family protein [Populus trichocarpa] g...    69   4e-10

>emb|CAN66619.1| hypothetical protein VITISV_028369 [Vitis vinifera]
          Length = 986

 Score = 80.9 bits (198), Expect = 1e-13
 Identities = 44/123 (35%), Positives = 72/123 (58%), Gaps = 3/123 (2%)
 Frame = -1

Query: 360 ERWMVLDD-KERCRFKDVILYKGQFYAVDSTRRVCTFDPHTLDMTVISNSVV-EESWEQR 187
           E+W ++DD  E+  F DVI YKG+FYA+D   R+   D  +L  T +++ V       + 
Sbjct: 206 EKWSLIDDGAEKSHFDDVIYYKGRFYAIDYKGRIVVIDADSLKATELASPVHGSRGTHKH 265

Query: 186 LLESNGDLYLI-DCQLFRVGCRVFRLDEKEKQWIRVKNLGDSVFSFGDNHSYFMSALDFP 10
            +ES G+L ++ D   + V   VF+  E+E++W  V ++GD V   GD+ ++ +S+ DFP
Sbjct: 266 FVESFGELDIVADVPDYPVHFEVFKFIEEEQKWDWVSDIGDRVLFVGDDRTFSLSSTDFP 325

Query: 9   GLK 1
           G K
Sbjct: 326 GFK 328



 Score = 75.5 bits (184), Expect = 4e-12
 Identities = 44/138 (31%), Positives = 72/138 (52%), Gaps = 18/138 (13%)
 Frame = -1

Query: 360  ERWMVLDD-KERCRFKDVILYKGQFYAVDSTRRVCTFDPHTLDMTVISNSVVEESWEQR- 187
            ++W ++DD  E+  F DVI YKG+FYA+D   R+   D  +L  T +++ V       R 
Sbjct: 596  KKWSLIDDGAEKSHFDDVIYYKGRFYAIDYXGRIVVIDADSLKATELASPVHGSRGNHRH 655

Query: 186  LLESNGDLYLIDCQL----------------FRVGCRVFRLDEKEKQWIRVKNLGDSVFS 55
             +ES G+L+L+D  +                + V   VF+  E+E++W  V  +GD V  
Sbjct: 656  FVESFGELFLVDKYVVTFCNNYSDIVSVVPDYPVHXEVFKFIEEEQKWDWVSGIGDRVLF 715

Query: 54   FGDNHSYFMSALDFPGLK 1
              D+ ++ +S+ DFPG K
Sbjct: 716  VDDDRTFSLSSTDFPGFK 733


>ref|XP_002278547.2| PREDICTED: F-box protein SKIP23-like [Vitis vinifera]
          Length = 405

 Score = 79.0 bits (193), Expect = 4e-13
 Identities = 46/142 (32%), Positives = 74/142 (52%), Gaps = 22/142 (15%)
 Frame = -1

Query: 360 ERWMVLDD-KERCRFKDVILYKGQFYAVDSTRRVCTFDPHTLDMTVISNSVV-EESWEQR 187
           E+W ++DD  E+  F DVI YKG+FYA+D   R+   D  +L  T +++ V       + 
Sbjct: 206 EKWSLIDDGAEKSHFDDVIYYKGRFYAIDYKGRIVVIDADSLKATELASPVHGSRGTHKH 265

Query: 186 LLESNGDLYLIDCQL--------------------FRVGCRVFRLDEKEKQWIRVKNLGD 67
            +ES G+L+L+D  L                    + V   VF+  E+E++W  V ++GD
Sbjct: 266 FVESFGELFLVDKYLDDELQIFCNDYSDIVADVPDYPVHFEVFKFIEEEQKWDWVSDIGD 325

Query: 66  SVFSFGDNHSYFMSALDFPGLK 1
            V   GD+ ++ +S+ DFPG K
Sbjct: 326 RVLFVGDDRTFSLSSTDFPGFK 347


>ref|XP_002279526.2| PREDICTED: LOW QUALITY PROTEIN: F-box protein SKIP23-like [Vitis
           vinifera]
          Length = 387

 Score = 73.2 bits (178), Expect = 2e-11
 Identities = 44/137 (32%), Positives = 73/137 (53%), Gaps = 17/137 (12%)
 Frame = -1

Query: 360 ERWMVLDDKERCRFKDVILYKGQFYAVDSTRRVCTFDPHTLDMTVIS--NSVVEESWEQR 187
           ++WM++DD +   + DVI + G+FYAVD+T R    D       V++   S V    ++ 
Sbjct: 189 KKWMIIDDMQS-PYDDVIFFDGKFYAVDNTGRTVVVDVADGSSPVVNLAASSVFGGDKKV 247

Query: 186 LLESNGDLYLIDCQLFR---------------VGCRVFRLDEKEKQWIRVKNLGDSVFSF 52
           L+ES G+L L+D                    +  +VFRLD++E++W+ +++LGD +   
Sbjct: 248 LVESEGELLLVDTYFTMYHDDDEHVRWMIERMIHFKVFRLDQREQKWVEIESLGDRLLFL 307

Query: 51  GDNHSYFMSALDFPGLK 1
           GD+ S+   A DF G K
Sbjct: 308 GDDSSFSARASDFYGCK 324


>ref|XP_003599226.1| F-box protein [Medicago truncatula] gi|355488274|gb|AES69477.1|
           F-box protein [Medicago truncatula]
          Length = 357

 Score = 72.4 bits (176), Expect = 4e-11
 Identities = 39/101 (38%), Positives = 60/101 (59%), Gaps = 1/101 (0%)
 Frame = -1

Query: 315 DVILYKGQFYAVDSTRRVCTFDPHTLDMTVISNSVVEESWEQRLLESNGDLYLIDC-QLF 139
           D+ ++KG+FYAVD   R     P +  + +++  VV     + L+ES+G+L L+D  +  
Sbjct: 201 DICVFKGRFYAVDKFCRTVMIGPDST-VQMVAEHVVHGGDRKLLVESDGELLLVDIYESL 259

Query: 138 RVGCRVFRLDEKEKQWIRVKNLGDSVFSFGDNHSYFMSALD 16
             G  VFR  EKEK+W+++ NLGD V  FG+  S+  SA D
Sbjct: 260 DFGINVFRFHEKEKKWVKLMNLGDRVLFFGEGCSFSASASD 300


>ref|XP_002313690.1| f-box family protein [Populus trichocarpa]
           gi|222850098|gb|EEE87645.1| f-box family protein
           [Populus trichocarpa]
          Length = 410

 Score = 68.9 bits (167), Expect = 4e-10
 Identities = 48/144 (33%), Positives = 72/144 (50%), Gaps = 24/144 (16%)
 Frame = -1

Query: 360 ERWMVLDDKERCRFKDVILYKGQFYAVDSTRRVCTFDPHTLDMTVISNSVVEESWEQRLL 181
           +RW ++++     F DVI+YKG+FYAVD+T R       T D+ ++ + V     ++ L+
Sbjct: 193 KRWTIINEMPS-PFDDVIVYKGRFYAVDNTGRTVVVALDT-DLGLVGDPVFGGD-KKYLV 249

Query: 180 ESNGDLYLIDCQLF------------------------RVGCRVFRLDEKEKQWIRVKNL 73
           ES GDL L+D  L                          V  +VF+L+E+ K WI VKNL
Sbjct: 250 ESKGDLLLVDMYLSIDTDEGLSIGNDVVQDLVQYMSERTVRFKVFKLNEEGKSWIEVKNL 309

Query: 72  GDSVFSFGDNHSYFMSALDFPGLK 1
            D V   GD+ ++  SA +  G K
Sbjct: 310 EDRVLFLGDDSTFSASASELSGCK 333