BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00015138
         (493 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002270940.2| PREDICTED: pentatricopeptide repeat-containi...   169   3e-40
emb|CBI41082.3| unnamed protein product [Vitis vinifera]              153   2e-35
ref|XP_004154387.1| PREDICTED: pentatricopeptide repeat-containi...   117   1e-24
ref|XP_002265079.1| PREDICTED: pentatricopeptide repeat-containi...   114   6e-24
emb|CBI30729.3| unnamed protein product [Vitis vinifera]              114   6e-24

>ref|XP_002270940.2| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
           [Vitis vinifera]
          Length = 640

 Score =  169 bits (427), Expect = 3e-40
 Identities = 91/166 (54%), Positives = 122/166 (73%), Gaps = 3/166 (1%)
 Frame = -3

Query: 491 QIHARLIQLGMYTDVYLSSKLL--YFYCCNGY-VGSARLIFNATPISCLNQFLWNTMIRA 321
           QIHA +I+  +  + ++ +KLL   F C +   +  AR +F+  P    + F+WNTMIRA
Sbjct: 21  QIHALIIKTSLDGNNFVLAKLLRRLFACSSANDLLYARSVFDEIPSP--DTFIWNTMIRA 78

Query: 320 YLNVPNPQESLSLFFQMRLRVGIVVDSFSLSLVLQACGRSVDYTSGRRVHTHVVKLGFAS 141
           YLN  NPQES+SLFFQMR +  I +DS+SLSLV+QACGR  D  +G+++HT V+K+G  S
Sbjct: 79  YLNSQNPQESMSLFFQMRHQECIPIDSYSLSLVIQACGRLKDPGNGQKLHTQVLKIGLGS 138

Query: 140 DLFVQTALIEMYAKLGTVDVAKNILDEMDQPDMVSYNVLLAECVRI 3
           DLFV+TALIEMYAK G +++A+NILDEM  PD+V YNVLLAE VR+
Sbjct: 139 DLFVETALIEMYAKFGDIEIARNILDEMAHPDLVPYNVLLAEYVRV 184



 Score = 66.6 bits (161), Expect = 2e-09
 Identities = 39/145 (26%), Positives = 78/145 (53%), Gaps = 1/145 (0%)
 Frame = -3

Query: 452 DVYLSSKLLYFYCCNGYVGSARLIFNATPISCLNQFL-WNTMIRAYLNVPNPQESLSLFF 276
           D+   + +++ +   G VG+A+ +F+ T   C    + W++MI AY       E+L LF 
Sbjct: 201 DLVSWNTMIHGHASLGDVGTAKKLFDRT---CERDLISWSSMIAAYAKARQSNEALRLFH 257

Query: 275 QMRLRVGIVVDSFSLSLVLQACGRSVDYTSGRRVHTHVVKLGFASDLFVQTALIEMYAKL 96
           +M+L   ++ D  ++  VL ACG       G+ +H  + +     DL + T+L++MYAK 
Sbjct: 258 EMQL-ANVLPDKVTMVSVLSACGDVGALGMGKMIHECIERNRIEIDLKLGTSLVDMYAKC 316

Query: 95  GTVDVAKNILDEMDQPDMVSYNVLL 21
           G +D +  + + M+  D+ +++ ++
Sbjct: 317 GDIDNSLRVFNGMNNRDVFAWSAMI 341


>emb|CBI41082.3| unnamed protein product [Vitis vinifera]
          Length = 413

 Score =  153 bits (386), Expect = 2e-35
 Identities = 84/163 (51%), Positives = 117/163 (71%), Gaps = 6/163 (3%)
 Frame = -3

Query: 491 QIHARLIQLGMYTDVYLSSKLL--YFYCCNGY-VGSARLIFNATPISCLNQFLWNTMIRA 321
           QIHA +I+  +  + ++ +KLL   F C +   +  AR +F+  P    + F+WNTMIRA
Sbjct: 15  QIHALIIKTSLDGNNFVLAKLLRRLFACSSANDLLYARSVFDEIPSP--DTFIWNTMIRA 72

Query: 320 YLNVPNPQESLSLFFQMRLRVGIVVDSFSLSLVLQACGRSVDYTSGRRVHTHVVKLGFAS 141
           YLN  NPQES+SLFFQMR +  I +DS+SLSLV+QACGR  D  +G+++HT V+K+G  S
Sbjct: 73  YLNSQNPQESMSLFFQMRHQECIPIDSYSLSLVIQACGRLKDPGNGQKLHTQVLKIGLGS 132

Query: 140 DLFVQTALIEMYAKLGTVDVAKNILDEMDQP---DMVSYNVLL 21
           DLFV+TALIEMYAK G +++A+NILDEM  P   D+VS+N ++
Sbjct: 133 DLFVETALIEMYAKFGDIEIARNILDEMAHPDLRDLVSWNTMI 175



 Score = 70.1 bits (170), Expect = 2e-10
 Identities = 39/137 (28%), Positives = 76/137 (55%), Gaps = 1/137 (0%)
 Frame = -3

Query: 491 QIHARLIQLGMYTDVYLSSKLLYFYCCNGYVGSARLIFNATPISCLNQFL-WNTMIRAYL 315
           ++H +++++G+ +D+++ + L+  Y   G +  AR I +      L   + WNTMI  + 
Sbjct: 120 KLHTQVLKIGLGSDLFVETALIEMYAKFGDIEIARNILDEMAHPDLRDLVSWNTMIHGHA 179

Query: 314 NVPNPQESLSLFFQMRLRVGIVVDSFSLSLVLQACGRSVDYTSGRRVHTHVVKLGFASDL 135
           ++ +  E+L LF +M+L   ++ D  ++  VL ACG       G+ +H  + +     DL
Sbjct: 180 SLGDSNEALRLFHEMQL-ANVLPDKVTMVSVLSACGDVGALGMGKMIHECIERNRIEIDL 238

Query: 134 FVQTALIEMYAKLGTVD 84
            + T+L++MYAK G +D
Sbjct: 239 KLGTSLVDMYAKCGDID 255


>ref|XP_004154387.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
           gi|449522468|ref|XP_004168248.1| PREDICTED:
           pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
          Length = 574

 Score =  117 bits (292), Expect = 1e-24
 Identities = 63/158 (39%), Positives = 99/158 (62%)
 Frame = -3

Query: 491 QIHARLIQLGMYTDVYLSSKLLYFYCCNGYVGSARLIFNATPISCLNQFLWNTMIRAYLN 312
           Q+HAR+ Q+G+  +  L++KL+  YC    + +A L+F+   IS  N FLWN MIR Y  
Sbjct: 22  QLHARICQVGISFNPLLATKLVNLYCICNSLTNAHLLFDR--ISKRNLFLWNVMIRGYAW 79

Query: 311 VPNPQESLSLFFQMRLRVGIVVDSFSLSLVLQACGRSVDYTSGRRVHTHVVKLGFASDLF 132
               + ++SL++QMR   G+V D F+   VL+AC        G+++H  V++ G  SD+F
Sbjct: 80  NGPYELAISLYYQMR-DYGLVPDKFTFPFVLKACSALSAMEEGKKIHKDVIRSGLESDVF 138

Query: 131 VQTALIEMYAKLGTVDVAKNILDEMDQPDMVSYNVLLA 18
           V  ALI+MYAK G V+ A+ + D++D+ D+V +N +LA
Sbjct: 139 VGAALIDMYAKCGCVESARQVFDKIDERDVVCWNSMLA 176



 Score = 74.7 bits (182), Expect = 7e-12
 Identities = 47/157 (29%), Positives = 88/157 (56%)
 Frame = -3

Query: 491 QIHARLIQLGMYTDVYLSSKLLYFYCCNGYVGSARLIFNATPISCLNQFLWNTMIRAYLN 312
           +IH  +I+ G+ +DV++ + L+  Y   G V SAR +F+   I   +   WN+M+  Y  
Sbjct: 123 KIHKDVIRSGLESDVFVGAALIDMYAKCGCVESARQVFDK--IDERDVVCWNSMLATYSQ 180

Query: 311 VPNPQESLSLFFQMRLRVGIVVDSFSLSLVLQACGRSVDYTSGRRVHTHVVKLGFASDLF 132
              P ESL+L   M    G+     +  + + A   +     G+ +H +  + GF S+  
Sbjct: 181 NGQPDESLALCRVMAFN-GLKPTEGTFVISIAASADNGLLPQGKELHGYSWRHGFESNDK 239

Query: 131 VQTALIEMYAKLGTVDVAKNILDEMDQPDMVSYNVLL 21
           V+TAL++MYAK G+V+VA+++ + +++  +VS+N ++
Sbjct: 240 VKTALMDMYAKSGSVNVARSLFELLEEKRVVSWNAMI 276


>ref|XP_002265079.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g18840-like [Vitis vinifera]
          Length = 536

 Score =  114 bits (286), Expect = 6e-24
 Identities = 57/161 (35%), Positives = 96/161 (59%), Gaps = 3/161 (1%)
 Frame = -3

Query: 491 QIHARLIQLGMYTDVYLSSKLLYFYCCNGYVGS---ARLIFNATPISCLNQFLWNTMIRA 321
           Q HA +++ G+    + +S+L+     N +  +   A  IF+  P    N ++WNT+IRA
Sbjct: 25  QAHAHILKSGLIHSTFAASRLIASVSTNSHAQAIPYAHSIFSRIPNP--NSYMWNTIIRA 82

Query: 320 YLNVPNPQESLSLFFQMRLRVGIVVDSFSLSLVLQACGRSVDYTSGRRVHTHVVKLGFAS 141
           Y N P P+ +L++F QM L   ++ D ++ +  L++CG       GR++H HV+K G   
Sbjct: 83  YANSPTPEAALTIFHQM-LHASVLPDKYTFTFALKSCGSFSGVEEGRQIHGHVLKTGLGD 141

Query: 140 DLFVQTALIEMYAKLGTVDVAKNILDEMDQPDMVSYNVLLA 18
           DLF+Q  LI +YA  G ++ A+++LD M + D+VS+N LL+
Sbjct: 142 DLFIQNTLIHLYASCGCIEDARHLLDRMLERDVVSWNALLS 182



 Score = 74.3 bits (181), Expect = 9e-12
 Identities = 45/139 (32%), Positives = 73/139 (52%), Gaps = 5/139 (3%)
 Frame = -3

Query: 419 YCCNGYVG-----SARLIFNATPISCLNQFLWNTMIRAYLNVPNPQESLSLFFQMRLRVG 255
           +  +GYVG      AR +F  TP+   N   WN MI  Y +     E L LF  M+   G
Sbjct: 210 FMISGYVGVGLLEEARRVFGETPVK--NVVSWNAMITGYSHAGRFSEVLVLFEDMQ-HAG 266

Query: 254 IVVDSFSLSLVLQACGRSVDYTSGRRVHTHVVKLGFASDLFVQTALIEMYAKLGTVDVAK 75
           +  D+ +L  VL AC      + G  VH ++ K G + D FV TAL++MY+K G+++ A 
Sbjct: 267 VKPDNCTLVSVLSACAHVGALSQGEWVHAYIDKNGISIDGFVATALVDMYSKCGSIEKAL 326

Query: 74  NILDEMDQPDMVSYNVLLA 18
            + +   + D+ ++N +++
Sbjct: 327 EVFNSCLRKDISTWNSIIS 345


>emb|CBI30729.3| unnamed protein product [Vitis vinifera]
          Length = 506

 Score =  114 bits (286), Expect = 6e-24
 Identities = 57/161 (35%), Positives = 96/161 (59%), Gaps = 3/161 (1%)
 Frame = -3

Query: 491 QIHARLIQLGMYTDVYLSSKLLYFYCCNGYVGS---ARLIFNATPISCLNQFLWNTMIRA 321
           Q HA +++ G+    + +S+L+     N +  +   A  IF+  P    N ++WNT+IRA
Sbjct: 25  QAHAHILKSGLIHSTFAASRLIASVSTNSHAQAIPYAHSIFSRIPNP--NSYMWNTIIRA 82

Query: 320 YLNVPNPQESLSLFFQMRLRVGIVVDSFSLSLVLQACGRSVDYTSGRRVHTHVVKLGFAS 141
           Y N P P+ +L++F QM L   ++ D ++ +  L++CG       GR++H HV+K G   
Sbjct: 83  YANSPTPEAALTIFHQM-LHASVLPDKYTFTFALKSCGSFSGVEEGRQIHGHVLKTGLGD 141

Query: 140 DLFVQTALIEMYAKLGTVDVAKNILDEMDQPDMVSYNVLLA 18
           DLF+Q  LI +YA  G ++ A+++LD M + D+VS+N LL+
Sbjct: 142 DLFIQNTLIHLYASCGCIEDARHLLDRMLERDVVSWNALLS 182



 Score = 74.3 bits (181), Expect = 9e-12
 Identities = 49/190 (25%), Positives = 86/190 (45%), Gaps = 32/190 (16%)
 Frame = -3

Query: 491 QIHARLIQLGMYTDVYLSSKLLYFYCCNGYVGSAR------------------------- 387
           QIH  +++ G+  D+++ + L++ Y   G +  AR                         
Sbjct: 129 QIHGHVLKTGLGDDLFIQNTLIHLYASCGCIEDARHLLDRMLERDVVSWNALLSAYAERG 188

Query: 386 -------LIFNATPISCLNQFLWNTMIRAYLNVPNPQESLSLFFQMRLRVGIVVDSFSLS 228
                   +F  TP+   N   WN MI  Y +     E L LF  M+   G+  D+ +L 
Sbjct: 189 LMELASRRVFGETPVK--NVVSWNAMITGYSHAGRFSEVLVLFEDMQ-HAGVKPDNCTLV 245

Query: 227 LVLQACGRSVDYTSGRRVHTHVVKLGFASDLFVQTALIEMYAKLGTVDVAKNILDEMDQP 48
            VL AC      + G  VH ++ K G + D FV TAL++MY+K G+++ A  + +   + 
Sbjct: 246 SVLSACAHVGALSQGEWVHAYIDKNGISIDGFVATALVDMYSKCGSIEKALEVFNSCLRK 305

Query: 47  DMVSYNVLLA 18
           D+ ++N +++
Sbjct: 306 DISTWNSIIS 315