BLASTX nr result

ID: Coptis21_contig00015118 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00015118
         (296 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002328584.1| nbs-lrr resistance protein [Populus trichoca...    60   1e-07
ref|XP_002518080.1| leucine-rich repeat-containing protein, puta...    60   2e-07
ref|XP_002268547.2| PREDICTED: putative disease resistance prote...    55   8e-06
emb|CAN74893.1| hypothetical protein VITISV_002003 [Vitis vinifera]    55   8e-06

>ref|XP_002328584.1| nbs-lrr resistance protein [Populus trichocarpa]
           gi|222838566|gb|EEE76931.1| nbs-lrr resistance protein
           [Populus trichocarpa]
          Length = 906

 Score = 60.5 bits (145), Expect = 1e-07
 Identities = 37/87 (42%), Positives = 50/87 (57%), Gaps = 3/87 (3%)
 Frame = +2

Query: 2   HLELEGTDELSYFPRGLERLSCLRTLSKVVLDRDGGKGCQIGELKLLDHIQGKLRIEGL- 178
           +L +E T+ LS  P+G+ RLS LRTLSK  +  +  +GC +GELK L+H++G L I GL 
Sbjct: 649 YLNIEETESLSVLPQGIGRLSNLRTLSKFCIG-ENREGCNVGELKNLNHLRGHLEISGLE 707

Query: 179 --RQRVDSXXXXXXXXXXXRSLDLVFS 253
             R   +            RSLDL FS
Sbjct: 708 KVRNVNEVMEANLKNKEHLRSLDLAFS 734


>ref|XP_002518080.1| leucine-rich repeat-containing protein, putative [Ricinus communis]
           gi|223542676|gb|EEF44213.1| leucine-rich
           repeat-containing protein, putative [Ricinus communis]
          Length = 940

 Score = 60.1 bits (144), Expect = 2e-07
 Identities = 38/86 (44%), Positives = 51/86 (59%), Gaps = 2/86 (2%)
 Frame = +2

Query: 2   HLELEGTDELSYFPRGLERLSCLRTLSKVVLDRDGGKGCQIGELKLLDHIQGKLRIEGLR 181
           HL L  TD L+ FP+G+ERLS LR L+K V+  +  +GC I ELK L +++G L I  L 
Sbjct: 665 HLNLRETDCLNIFPQGIERLSNLRMLTKFVVS-ENKEGCNIAELKNLKYLRGHLEISRLE 723

Query: 182 QRVDS--XXXXXXXXXXXRSLDLVFS 253
           + VD+             +SLDLVFS
Sbjct: 724 KVVDTDKAKEADLTNKHLQSLDLVFS 749


>ref|XP_002268547.2| PREDICTED: putative disease resistance protein RGA4-like [Vitis
           vinifera]
          Length = 880

 Score = 54.7 bits (130), Expect = 8e-06
 Identities = 26/65 (40%), Positives = 44/65 (67%)
 Frame = +2

Query: 2   HLELEGTDELSYFPRGLERLSCLRTLSKVVLDRDGGKGCQIGELKLLDHIQGKLRIEGLR 181
           HL+  G  +L   P+G+ RL+ L+TL + V+  DG   C+IG+L+ L++++G+L I GLR
Sbjct: 638 HLQNCGALDLKGLPKGIARLNSLQTLEEFVVSSDGDAECKIGDLRNLNNLRGELEIRGLR 697

Query: 182 QRVDS 196
           +  D+
Sbjct: 698 KVEDA 702


>emb|CAN74893.1| hypothetical protein VITISV_002003 [Vitis vinifera]
          Length = 798

 Score = 54.7 bits (130), Expect = 8e-06
 Identities = 26/65 (40%), Positives = 44/65 (67%)
 Frame = +2

Query: 2   HLELEGTDELSYFPRGLERLSCLRTLSKVVLDRDGGKGCQIGELKLLDHIQGKLRIEGLR 181
           HL+  G  +L   P+G+ RL+ L+TL + V+  DG   C+IG+L+ L++++G+L I GLR
Sbjct: 555 HLQNCGALDLKGLPKGIARLNSLQTLEEFVVSSDGDAECKIGDLRNLNNLRGELEIRGLR 614

Query: 182 QRVDS 196
           +  D+
Sbjct: 615 KVEDA 619


Top