BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00015010
         (2020 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI20034.3| unnamed protein product [Vitis vinifera]              563   e-158
emb|CAN78368.1| hypothetical protein VITISV_028672 [Vitis vinifera]   560   e-157
ref|XP_002268129.1| PREDICTED: pentatricopeptide repeat-containi...   557   e-156
ref|XP_003542990.1| PREDICTED: pentatricopeptide repeat-containi...   540   e-151
ref|XP_002515292.1| pentatricopeptide repeat-containing protein,...   535   e-149

>emb|CBI20034.3| unnamed protein product [Vitis vinifera]
          Length = 596

 Score =  563 bits (1452), Expect = e-158
 Identities = 286/473 (60%), Positives = 345/473 (72%)
 Frame = -1

Query: 1891 GERWVCRQQMCFLNGISLPMSHFIHYSFDSSFHCSLGQVSCLLPHSFSHSFPQEQMLTTL 1712
            G+R +  QQ+  L+G+SL +S  + YS     H    +V  LLPH  S   P  Q+L   
Sbjct: 45   GQRRLGGQQVRLLDGLSLSLSRLLQYSLHCRHHRPHCEVPPLLPHPSSLCLPHPQVLAPN 104

Query: 1711 RTKITVAYLSSGVVSSRGFCSVSNDDSDVXXXXXXXXXXXXXXECGGFESKSDGKEVERV 1532
             T   +         SRGF      D                 E     S +D +EV RV
Sbjct: 105  STPSLLGSPQFLGSFSRGFARALGGDQHSDPEPDGDNVGGDFDEVN-VNSGADPEEVSRV 163

Query: 1531 CKVINELFASDRNMEGILDQCGIXXXXXXXXXXXDRFKHARKPAFRFFGWAGEKEGFEHD 1352
            C+VI+ELFA DRNME +LD+C +           +RFKHARKPAFRFF WAG+K GF H+
Sbjct: 164  CRVIDELFALDRNMEAVLDECNVDLSHALVVGVLERFKHARKPAFRFFCWAGQKAGFTHN 223

Query: 1351 SRTYNSMMGILGKTRQLESMVAMMEEMGKKGLLTMETFSIAIRSFAGAREMKKAIGIFEL 1172
            SRTYN+MM +LG+TRQ ESM+ M+ EMG+KGLLTMETFSIAI++FA A+E KKA+G+FEL
Sbjct: 224  SRTYNAMMSVLGRTRQFESMMGMLGEMGEKGLLTMETFSIAIKAFAAAKERKKAVGVFEL 283

Query: 1171 MKKYNYKAGVDTFNSLLDALGRAKLGKEAQALFEKLKDRFPPDMRTYSVLLAGWCKVKNL 992
            MK+YN+ AGVDT N LLD LGRAKLGKEAQALFEKL+DRF P++RTY+VLL GWC++KNL
Sbjct: 284  MKRYNFDAGVDTINCLLDNLGRAKLGKEAQALFEKLEDRFTPNLRTYTVLLNGWCRIKNL 343

Query: 991  MEAGRVWNEMIDKGLKPDIVAHHIMLEGLLRGRRESEAIKLFELMKAKGPSPSVRSYTIL 812
            +EAGR WNEMIDKG KPDI+AHH MLEGLL+ +++S+AIKLFE+MKAKGPSP+VR+YTIL
Sbjct: 344  VEAGRTWNEMIDKGFKPDIIAHHTMLEGLLKCKKKSDAIKLFEVMKAKGPSPNVRTYTIL 403

Query: 811  IRDLCKRNKMEEAVNYFNEMVDIGCDLDPAIYTCLMVGFGNRKNLEKVYGLLKEMKEKGC 632
            IRDLCK+ KM+EAV YF+EMVD GC  D A+YTCL+ GFGN+K ++KVY LLKEMKEKGC
Sbjct: 404  IRDLCKQMKMQEAVEYFDEMVDSGCQPDAAVYTCLITGFGNQKKMDKVYALLKEMKEKGC 463

Query: 631  PPDGLTYNALIKLMTNRQMPDDAVRIYKKMIQNGHKPTIHTYKCQMMQLEYIR 473
            P DG TYNALIKLMTNRQMPDDAVRIYKKMIQNG + T+HTY   M    Y R
Sbjct: 464  PADGRTYNALIKLMTNRQMPDDAVRIYKKMIQNGIQSTLHTYNMMMKSYFYTR 516



 Score =  176 bits (445), Expect = 3e-41
 Identities = 92/146 (63%), Positives = 102/146 (69%)
 Frame = -3

Query: 506 QMPDDAVRIYKKMIQNGHKPTIHTYNMMMKSYFHLKNYEMGYAVWEEMASKGCCPDDNSY 327
           QMPDDAVRIYKKMIQNG + T+HTYNMMMKSYF+ +NYEMG A                 
Sbjct: 481 QMPDDAVRIYKKMIQNGIQSTLHTYNMMMKSYFYTRNYEMGCA----------------- 523

Query: 326 IVFVGGLIRHGRSEEACKYLEEMIEKGMKAPQLDYNKFAADFSRAGKPNILEELAQKMKF 147
                                EMIEKGMKAPQLDYNKFAADFSRAGKP+ILEELA+KMKF
Sbjct: 524 ---------------------EMIEKGMKAPQLDYNKFAADFSRAGKPDILEELARKMKF 562

Query: 146 SGKFEVSNVFARWSEMMKKSIKQREP 69
            GKFEVSNVFARW+EMMKK +K+R+P
Sbjct: 563 EGKFEVSNVFARWAEMMKKRVKRRDP 588



 Score =  100 bits (250), Expect = 1e-18
 Identities = 66/279 (23%), Positives = 129/279 (46%), Gaps = 1/279 (0%)
 Frame = -1

Query: 1375 EKEGFEHDSRTYNSMMGILGKTRQLESMVAMMEEMGKKGLLTMETFSIAIRSFAGAREMK 1196
            ++  F+    T N ++  LG+ +  +   A+ E++  +    + T+++ +  +   + + 
Sbjct: 285  KRYNFDAGVDTINCLLDNLGRAKLGKEAQALFEKLEDRFTPNLRTYTVLLNGWCRIKNLV 344

Query: 1195 KAIGIFELMKKYNYKAGVDTFNSLLDALGRAKLGKEAQALFEKLKDRFP-PDMRTYSVLL 1019
            +A   +  M    +K  +   +++L+ L + K   +A  LFE +K + P P++RTY++L+
Sbjct: 345  EAGRTWNEMIDKGFKPDIIAHHTMLEGLLKCKKKSDAIKLFEVMKAKGPSPNVRTYTILI 404

Query: 1018 AGWCKVKNLMEAGRVWNEMIDKGLKPDIVAHHIMLEGLLRGRRESEAIKLFELMKAKGPS 839
               CK   + EA   ++EM+D G +PD   +  ++ G    ++  +   L + MK KG  
Sbjct: 405  RDLCKQMKMQEAVEYFDEMVDSGCQPDAAVYTCLITGFGNQKKMDKVYALLKEMKEKGCP 464

Query: 838  PSVRSYTILIRDLCKRNKMEEAVNYFNEMVDIGCDLDPAIYTCLMVGFGNRKNLEKVYGL 659
               R+Y  LI+ +  R   ++AV  + +M+  G       Y  +M  +   +N E     
Sbjct: 465  ADGRTYNALIKLMTNRQMPDDAVRIYKKMIQNGIQSTLHTYNMMMKSYFYTRNYEMG--- 521

Query: 658  LKEMKEKGCPPDGLTYNALIKLMTNRQMPDDAVRIYKKM 542
              EM EKG     L YN      +    PD    + +KM
Sbjct: 522  CAEMIEKGMKAPQLDYNKFAADFSRAGKPDILEELARKM 560


>emb|CAN78368.1| hypothetical protein VITISV_028672 [Vitis vinifera]
          Length = 927

 Score =  560 bits (1443), Expect = e-157
 Identities = 291/517 (56%), Positives = 356/517 (68%), Gaps = 44/517 (8%)
 Frame = -1

Query: 1891 GERWVCRQQMCFLNGISLPMSHFIHYSFDSSFHCSLGQVSCLLPHSFSHSFPQEQMLTTL 1712
            G+R +  QQ+  L+G+SL +S  + YS     H    +V  LLPH  S   P  Q+L   
Sbjct: 45   GQRRLGGQQVRLLDGLSLSLSRLLQYSLHCRHHRPHCEVPPLLPHPSSLCLPHPQVLAPN 104

Query: 1711 RTKITV-----------------------------------------AYLSSGVVS---S 1664
             T   +                                         A ++SG  +   S
Sbjct: 105  STPSLLGSPQFLGFFSRGFAGALGGDQHSDPEPDGDVGDNGVVDYDGALVNSGADTEEKS 164

Query: 1663 RGFCSVSNDDSDVXXXXXXXXXXXXXXECGGFESKSDGKEVERVCKVINELFASDRNMEG 1484
            RGF  VS  ++D               +     S +D +EV RVC+VI+ELFA DRNME 
Sbjct: 165  RGFSRVSQGETDSDPETDGDENVGGDLDEVNVNSGADPEEVSRVCRVIDELFALDRNMEA 224

Query: 1483 ILDQCGIXXXXXXXXXXXDRFKHARKPAFRFFGWAGEKEGFEHDSRTYNSMMGILGKTRQ 1304
            +LD+C +           +RFKHARKPAFRFF WAG+K GF H+SRTYN+MM +LG+TRQ
Sbjct: 225  VLDECNVDLSHALVVGVLERFKHARKPAFRFFCWAGQKAGFTHNSRTYNAMMSVLGRTRQ 284

Query: 1303 LESMVAMMEEMGKKGLLTMETFSIAIRSFAGAREMKKAIGIFELMKKYNYKAGVDTFNSL 1124
             ESM+ M+ EMG+KGLLTMETFSIAI++FA A+E KKA+G+FELMK+YN+ AGVDT N L
Sbjct: 285  FESMMGMLGEMGEKGLLTMETFSIAIKAFAAAKERKKAVGVFELMKRYNFDAGVDTINCL 344

Query: 1123 LDALGRAKLGKEAQALFEKLKDRFPPDMRTYSVLLAGWCKVKNLMEAGRVWNEMIDKGLK 944
            LD LGRAKLGKEAQALFEKL+DRF P++RTY+VLL GWC++KNL+EAGR WNEMIDKG K
Sbjct: 345  LDNLGRAKLGKEAQALFEKLEDRFTPNLRTYTVLLNGWCRIKNLVEAGRTWNEMIDKGFK 404

Query: 943  PDIVAHHIMLEGLLRGRRESEAIKLFELMKAKGPSPSVRSYTILIRDLCKRNKMEEAVNY 764
            PDI+AHH MLEGLL+ +++S+AIKLFE+MKAKGPSP+VR+YTILIRDLCK+ KM+EAV Y
Sbjct: 405  PDIIAHHTMLEGLLKCKKKSDAIKLFEVMKAKGPSPNVRTYTILIRDLCKQMKMKEAVEY 464

Query: 763  FNEMVDIGCDLDPAIYTCLMVGFGNRKNLEKVYGLLKEMKEKGCPPDGLTYNALIKLMTN 584
            F+EMVD GC  D A+YTCL+ GFGN+K ++KVY LLKEMKEKGCP DG TYNALIKLMTN
Sbjct: 465  FDEMVDSGCQPDAAVYTCLITGFGNQKKMDKVYALLKEMKEKGCPADGRTYNALIKLMTN 524

Query: 583  RQMPDDAVRIYKKMIQNGHKPTIHTYKCQMMQLEYIR 473
            RQMPDDAVRIYKKMIQNG +PT+HTY   M    Y R
Sbjct: 525  RQMPDDAVRIYKKMIQNGIQPTLHTYNMMMKSYFYTR 561



 Score =  273 bits (698), Expect = 1e-70
 Identities = 126/146 (86%), Positives = 139/146 (95%)
 Frame = -3

Query: 506 QMPDDAVRIYKKMIQNGHKPTIHTYNMMMKSYFHLKNYEMGYAVWEEMASKGCCPDDNSY 327
           QMPDDAVRIYKKMIQNG +PT+HTYNMMMKSYF+ +NYEMG AVW+EM  KGCCPDDNSY
Sbjct: 526 QMPDDAVRIYKKMIQNGIQPTLHTYNMMMKSYFYTRNYEMGCAVWKEMGRKGCCPDDNSY 585

Query: 326 IVFVGGLIRHGRSEEACKYLEEMIEKGMKAPQLDYNKFAADFSRAGKPNILEELAQKMKF 147
           IVF+GGLIRHGRSEEAC+YLEEMIEKGMKAPQLDYNKFAADFSRAGKP+ILEELA+KMKF
Sbjct: 586 IVFIGGLIRHGRSEEACRYLEEMIEKGMKAPQLDYNKFAADFSRAGKPDILEELARKMKF 645

Query: 146 SGKFEVSNVFARWSEMMKKSIKQREP 69
            GKFEVSNVFARW+EMMKK +K+R+P
Sbjct: 646 EGKFEVSNVFARWAEMMKKRVKRRDP 671



 Score = 91.3 bits (225), Expect = 9e-16
 Identities = 69/314 (21%), Positives = 134/314 (42%), Gaps = 36/314 (11%)
 Frame = -1

Query: 1375 EKEGFEHDSRTYNSMMGILGKTRQLESMVAMMEEMGKKGLLTMETFSIAIRSFAGAREMK 1196
            ++  F+    T N ++  LG+ +  +   A+ E++  +    + T+++ +  +   + + 
Sbjct: 330  KRYNFDAGVDTINCLLDNLGRAKLGKEAQALFEKLEDRFTPNLRTYTVLLNGWCRIKNLV 389

Query: 1195 KAIGIFELMKKYNYKAGVDTFNSLLDALGRAKLGKEAQALFEKLKDRFP-PDMRTYSVLL 1019
            +A   +  M    +K  +   +++L+ L + K   +A  LFE +K + P P++RTY++L+
Sbjct: 390  EAGRTWNEMIDKGFKPDIIAHHTMLEGLLKCKKKSDAIKLFEVMKAKGPSPNVRTYTILI 449

Query: 1018 AGWCKVKNLMEAGRVWNEMIDKGLKPDIVAHHIMLEGLLRGRRESEAIKLFELMKAKGPS 839
               CK   + EA   ++EM+D G +PD   +  ++ G    ++  +   L + MK KG  
Sbjct: 450  RDLCKQMKMKEAVEYFDEMVDSGCQPDAAVYTCLITGFGNQKKMDKVYALLKEMKEKGCP 509

Query: 838  PSVRSYTILIRDLCKRNKMEEAVNYFNEMVDIGCDLDPAIYTCLMVGFGNRKNLEK---- 671
               R+Y  LI+ +  R   ++AV  + +M+  G       Y  +M  +   +N E     
Sbjct: 510  ADGRTYNALIKLMTNRQMPDDAVRIYKKMIQNGIQPTLHTYNMMMKSYFYTRNYEMGCAV 569

Query: 670  -------------------VYGL------------LKEMKEKGCPPDGLTYNALIKLMTN 584
                               + GL            L+EM EKG     L YN      + 
Sbjct: 570  WKEMGRKGCCPDDNSYIVFIGGLIRHGRSEEACRYLEEMIEKGMKAPQLDYNKFAADFSR 629

Query: 583  RQMPDDAVRIYKKM 542
               PD    + +KM
Sbjct: 630  AGKPDILEELARKM 643



 Score = 87.8 bits (216), Expect = 1e-14
 Identities = 60/247 (24%), Positives = 114/247 (46%), Gaps = 2/247 (0%)
 Frame = -1

Query: 1369 EGFEHDSRTYNSMMGILGKTRQLESMVAMMEEMGKKGLL-TMETFSIAIRSFAGAREMKK 1193
            +GF+ D   +++M+  L K ++    + + E M  KG    + T++I IR      +MK+
Sbjct: 401  KGFKPDIIAHHTMLEGLLKCKKKSDAIKLFEVMKAKGPSPNVRTYTILIRDLCKQMKMKE 460

Query: 1192 AIGIFELMKKYNYKAGVDTFNSLLDALGRAKLGKEAQALFEKLKDR-FPPDMRTYSVLLA 1016
            A+  F+ M     +     +  L+   G  K   +  AL +++K++  P D RTY+ L+ 
Sbjct: 461  AVEYFDEMVDSGCQPDAAVYTCLITGFGNQKKMDKVYALLKEMKEKGCPADGRTYNALIK 520

Query: 1015 GWCKVKNLMEAGRVWNEMIDKGLKPDIVAHHIMLEGLLRGRRESEAIKLFELMKAKGPSP 836
                 +   +A R++ +MI  G++P +  +++M++     R       +++ M  KG  P
Sbjct: 521  LMTNRQMPDDAVRIYKKMIQNGIQPTLHTYNMMMKSYFYTRNYEMGCAVWKEMGRKGCCP 580

Query: 835  SVRSYTILIRDLCKRNKMEEAVNYFNEMVDIGCDLDPAIYTCLMVGFGNRKNLEKVYGLL 656
               SY + I  L +  + EEA  Y  EM++ G       Y      F      + +  L 
Sbjct: 581  DDNSYIVFIGGLIRHGRSEEACRYLEEMIEKGMKAPQLDYNKFAADFSRAGKPDILEELA 640

Query: 655  KEMKEKG 635
            ++MK +G
Sbjct: 641  RKMKFEG 647


>ref|XP_002268129.1| PREDICTED: pentatricopeptide repeat-containing protein At3g62470,
            mitochondrial-like [Vitis vinifera]
          Length = 679

 Score =  557 bits (1436), Expect = e-156
 Identities = 290/517 (56%), Positives = 355/517 (68%), Gaps = 44/517 (8%)
 Frame = -1

Query: 1891 GERWVCRQQMCFLNGISLPMSHFIHYSFDSSFHCSLGQVSCLLPHSFSHSFPQEQMLTTL 1712
            G+R +  QQ+  L+G+SL +S  + YS     H    +V  LLPH  S   P  Q+L   
Sbjct: 45   GQRRLGGQQVRLLDGLSLSLSRLLQYSLHCRHHRPHCEVPPLLPHPSSLCLPHPQVLAPN 104

Query: 1711 RTKITV-----------------------------------------AYLSSGVVS---S 1664
             T   +                                         A ++SG  +   S
Sbjct: 105  STPSLLGSPQFLGSFSRGFARALGGDQHSDPEPDGDVGDNGVGDYDGALVNSGADTEEKS 164

Query: 1663 RGFCSVSNDDSDVXXXXXXXXXXXXXXECGGFESKSDGKEVERVCKVINELFASDRNMEG 1484
            RGF  VS  ++D               +     S +D +EV RVC+VI+ELFA DRNME 
Sbjct: 165  RGFSRVSQGETDSDPETDGDENVGGDFDEVNVNSGADPEEVSRVCRVIDELFALDRNMEA 224

Query: 1483 ILDQCGIXXXXXXXXXXXDRFKHARKPAFRFFGWAGEKEGFEHDSRTYNSMMGILGKTRQ 1304
            +LD+C +           +RFKHARKPAFRFF WAG+K GF H+SRTYN+MM +LG+TRQ
Sbjct: 225  VLDECNVDLSHALVVGVLERFKHARKPAFRFFCWAGQKAGFTHNSRTYNAMMSVLGRTRQ 284

Query: 1303 LESMVAMMEEMGKKGLLTMETFSIAIRSFAGAREMKKAIGIFELMKKYNYKAGVDTFNSL 1124
             ESM+ M+ EMG+KGLLTMETFSIAI++FA A+E KKA+G+FELMK+YN+ AGVDT N L
Sbjct: 285  FESMMGMLGEMGEKGLLTMETFSIAIKAFAAAKERKKAVGVFELMKRYNFDAGVDTINCL 344

Query: 1123 LDALGRAKLGKEAQALFEKLKDRFPPDMRTYSVLLAGWCKVKNLMEAGRVWNEMIDKGLK 944
            LD LGRAKLGKEAQALFEKL+DRF P++RTY+VLL GWC++KNL+EAGR WNEMIDKG K
Sbjct: 345  LDNLGRAKLGKEAQALFEKLEDRFTPNLRTYTVLLNGWCRIKNLVEAGRTWNEMIDKGFK 404

Query: 943  PDIVAHHIMLEGLLRGRRESEAIKLFELMKAKGPSPSVRSYTILIRDLCKRNKMEEAVNY 764
            PDI+AHH MLEGLL+ +++S+AIKLFE+MKAKGPSP+VR+YTILIRDLCK+ KM+EAV Y
Sbjct: 405  PDIIAHHTMLEGLLKCKKKSDAIKLFEVMKAKGPSPNVRTYTILIRDLCKQMKMQEAVEY 464

Query: 763  FNEMVDIGCDLDPAIYTCLMVGFGNRKNLEKVYGLLKEMKEKGCPPDGLTYNALIKLMTN 584
            F+EMVD GC  D A+YTCL+ GFGN+K ++KVY LLKEMKEKGCP DG TYNALIKLMTN
Sbjct: 465  FDEMVDSGCQPDAAVYTCLITGFGNQKKMDKVYALLKEMKEKGCPADGRTYNALIKLMTN 524

Query: 583  RQMPDDAVRIYKKMIQNGHKPTIHTYKCQMMQLEYIR 473
            RQMPDDAVRIYKKMIQNG + T+HTY   M    Y R
Sbjct: 525  RQMPDDAVRIYKKMIQNGIQSTLHTYNMMMKSYFYTR 561



 Score =  271 bits (694), Expect = 4e-70
 Identities = 126/146 (86%), Positives = 138/146 (94%)
 Frame = -3

Query: 506 QMPDDAVRIYKKMIQNGHKPTIHTYNMMMKSYFHLKNYEMGYAVWEEMASKGCCPDDNSY 327
           QMPDDAVRIYKKMIQNG + T+HTYNMMMKSYF+ +NYEMG AVWEEM  KGCCPDDNSY
Sbjct: 526 QMPDDAVRIYKKMIQNGIQSTLHTYNMMMKSYFYTRNYEMGCAVWEEMGRKGCCPDDNSY 585

Query: 326 IVFVGGLIRHGRSEEACKYLEEMIEKGMKAPQLDYNKFAADFSRAGKPNILEELAQKMKF 147
           IVF+GGLIRHGRSEEAC+YLEEMIEKGMKAPQLDYNKFAADFSRAGKP+ILEELA+KMKF
Sbjct: 586 IVFIGGLIRHGRSEEACRYLEEMIEKGMKAPQLDYNKFAADFSRAGKPDILEELARKMKF 645

Query: 146 SGKFEVSNVFARWSEMMKKSIKQREP 69
            GKFEVSNVFARW+EMMKK +K+R+P
Sbjct: 646 EGKFEVSNVFARWAEMMKKRVKRRDP 671



 Score =  115 bits (288), Expect = 4e-23
 Identities = 69/285 (24%), Positives = 138/285 (48%), Gaps = 1/285 (0%)
 Frame = -1

Query: 1375 EKEGFEHDSRTYNSMMGILGKTRQLESMVAMMEEMGKKGLLTMETFSIAIRSFAGAREMK 1196
            ++  F+    T N ++  LG+ +  +   A+ E++  +    + T+++ +  +   + + 
Sbjct: 330  KRYNFDAGVDTINCLLDNLGRAKLGKEAQALFEKLEDRFTPNLRTYTVLLNGWCRIKNLV 389

Query: 1195 KAIGIFELMKKYNYKAGVDTFNSLLDALGRAKLGKEAQALFEKLKDRFP-PDMRTYSVLL 1019
            +A   +  M    +K  +   +++L+ L + K   +A  LFE +K + P P++RTY++L+
Sbjct: 390  EAGRTWNEMIDKGFKPDIIAHHTMLEGLLKCKKKSDAIKLFEVMKAKGPSPNVRTYTILI 449

Query: 1018 AGWCKVKNLMEAGRVWNEMIDKGLKPDIVAHHIMLEGLLRGRRESEAIKLFELMKAKGPS 839
               CK   + EA   ++EM+D G +PD   +  ++ G    ++  +   L + MK KG  
Sbjct: 450  RDLCKQMKMQEAVEYFDEMVDSGCQPDAAVYTCLITGFGNQKKMDKVYALLKEMKEKGCP 509

Query: 838  PSVRSYTILIRDLCKRNKMEEAVNYFNEMVDIGCDLDPAIYTCLMVGFGNRKNLEKVYGL 659
               R+Y  LI+ +  R   ++AV  + +M+  G       Y  +M  +   +N E    +
Sbjct: 510  ADGRTYNALIKLMTNRQMPDDAVRIYKKMIQNGIQSTLHTYNMMMKSYFYTRNYEMGCAV 569

Query: 658  LKEMKEKGCPPDGLTYNALIKLMTNRQMPDDAVRIYKKMIQNGHK 524
             +EM  KGC PD  +Y   I  +      ++A R  ++MI+ G K
Sbjct: 570  WEEMGRKGCCPDDNSYIVFIGGLIRHGRSEEACRYLEEMIEKGMK 614



 Score = 84.7 bits (208), Expect = 8e-14
 Identities = 59/247 (23%), Positives = 113/247 (45%), Gaps = 2/247 (0%)
 Frame = -1

Query: 1369 EGFEHDSRTYNSMMGILGKTRQLESMVAMMEEMGKKGLL-TMETFSIAIRSFAGAREMKK 1193
            +GF+ D   +++M+  L K ++    + + E M  KG    + T++I IR      +M++
Sbjct: 401  KGFKPDIIAHHTMLEGLLKCKKKSDAIKLFEVMKAKGPSPNVRTYTILIRDLCKQMKMQE 460

Query: 1192 AIGIFELMKKYNYKAGVDTFNSLLDALGRAKLGKEAQALFEKLKDR-FPPDMRTYSVLLA 1016
            A+  F+ M     +     +  L+   G  K   +  AL +++K++  P D RTY+ L+ 
Sbjct: 461  AVEYFDEMVDSGCQPDAAVYTCLITGFGNQKKMDKVYALLKEMKEKGCPADGRTYNALIK 520

Query: 1015 GWCKVKNLMEAGRVWNEMIDKGLKPDIVAHHIMLEGLLRGRRESEAIKLFELMKAKGPSP 836
                 +   +A R++ +MI  G++  +  +++M++     R       ++E M  KG  P
Sbjct: 521  LMTNRQMPDDAVRIYKKMIQNGIQSTLHTYNMMMKSYFYTRNYEMGCAVWEEMGRKGCCP 580

Query: 835  SVRSYTILIRDLCKRNKMEEAVNYFNEMVDIGCDLDPAIYTCLMVGFGNRKNLEKVYGLL 656
               SY + I  L +  + EEA  Y  EM++ G       Y      F      + +  L 
Sbjct: 581  DDNSYIVFIGGLIRHGRSEEACRYLEEMIEKGMKAPQLDYNKFAADFSRAGKPDILEELA 640

Query: 655  KEMKEKG 635
            ++MK +G
Sbjct: 641  RKMKFEG 647


>ref|XP_003542990.1| PREDICTED: pentatricopeptide repeat-containing protein At3g62470,
            mitochondrial-like [Glycine max]
          Length = 648

 Score =  540 bits (1392), Expect = e-151
 Identities = 289/514 (56%), Positives = 363/514 (70%), Gaps = 22/514 (4%)
 Frame = -1

Query: 1933 STTKLYNGNETR---RRGERWVCRQQMCFLNGISLPMSHFIHYSFDSSFHCSLGQVSCLL 1763
            STTKL + ++ R   RRGE      Q+    G SLP+S  +  S + +FH S  Q+  LL
Sbjct: 39   STTKLRSLHQRRPPQRRGE------QVRLPCGSSLPLSRLLRSSLNCTFHHSRCQIPFLL 92

Query: 1762 PHSFSHSFPQEQMLTTLRTKITVAYLS--SGVVSS------------RGFCS-----VSN 1640
            PH           L TL+ K+ + +L+  S + SS            R F S     V N
Sbjct: 93   PHP--------SPLLTLQKKLLIPHLATFSALPSSPFHEKFPFLNSPRTFASNADSGVEN 144

Query: 1639 DDSDVXXXXXXXXXXXXXXECGGFESKSDGKEVERVCKVINELFASDRNMEGILDQCGIX 1460
            DD D                    ES +D  EVERVCKVI+ELFA DRNME +LD+CG+ 
Sbjct: 145  DDDDDDGGDGDKGYDGRGV---SGESCADPVEVERVCKVIDELFALDRNMEVVLDECGVR 201

Query: 1459 XXXXXXXXXXDRFKHARKPAFRFFGWAGEKEGFEHDSRTYNSMMGILGKTRQLESMVAMM 1280
                       RFKHARKPAFRFF WAG++ GF HDSRTYN MM +LG+TRQ E+MVAM+
Sbjct: 202  LSHDLVVDVLQRFKHARKPAFRFFCWAGKRPGFAHDSRTYNFMMCVLGRTRQFETMVAML 261

Query: 1279 EEMGKKGLLTMETFSIAIRSFAGAREMKKAIGIFELMKKYNYKAGVDTFNSLLDALGRAK 1100
            EEMG+KGLLTMETFSIAI++FA A++ KKA+GIF+LMKKY +K GVD  N LLD+L  AK
Sbjct: 262  EEMGEKGLLTMETFSIAIKAFAEAKQRKKAVGIFDLMKKYGFKVGVDVINFLLDSLSTAK 321

Query: 1099 LGKEAQALFEKLKDRFPPDMRTYSVLLAGWCKVKNLMEAGRVWNEMIDKGLKPDIVAHHI 920
            LGKEAQA+FEKLKDRF P ++TY++LL+GWC++KNL+EAGRVWNEMID+G  PD+VAH++
Sbjct: 322  LGKEAQAVFEKLKDRFTPSLQTYTILLSGWCRLKNLLEAGRVWNEMIDRGFNPDVVAHNV 381

Query: 919  MLEGLLRGRRESEAIKLFELMKAKGPSPSVRSYTILIRDLCKRNKMEEAVNYFNEMVDIG 740
            MLEGLL+ +++S+AIKLFE+MKAKGPSP+VRSYTI+I+D CK+  M EA+ YF+ MVD G
Sbjct: 382  MLEGLLKCKKKSDAIKLFEIMKAKGPSPNVRSYTIMIQDFCKQKLMGEAIEYFDVMVDRG 441

Query: 739  CDLDPAIYTCLMVGFGNRKNLEKVYGLLKEMKEKGCPPDGLTYNALIKLMTNRQMPDDAV 560
            C  D A+YTCL+ GFG +K ++ VY LLKEM+E+GCPPDG TYNALIKLMT++ MPDDAV
Sbjct: 442  CQPDAALYTCLITGFGRQKKMDMVYSLLKEMRERGCPPDGRTYNALIKLMTSQHMPDDAV 501

Query: 559  RIYKKMIQNGHKPTIHTYKCQMMQLEYIRK*YRM 458
            RIYKKMIQ+G KPTIHTY   +M+  ++ K Y M
Sbjct: 502  RIYKKMIQSGIKPTIHTYN-MIMKSYFVTKNYEM 534



 Score =  239 bits (610), Expect = 2e-60
 Identities = 112/151 (74%), Positives = 129/151 (85%)
 Frame = -3

Query: 503 MPDDAVRIYKKMIQNGHKPTIHTYNMMMKSYFHLKNYEMGYAVWEEMASKGCCPDDNSYI 324
           MPDDAVRIYKKMIQ+G KPTIHTYNM+MKSYF  KNYEMG+ +W+EM  KGCCPDDNSYI
Sbjct: 496 MPDDAVRIYKKMIQSGIKPTIHTYNMIMKSYFVTKNYEMGHEIWDEMHQKGCCPDDNSYI 555

Query: 323 VFVGGLIRHGRSEEACKYLEEMIEKGMKAPQLDYNKFAADFSRAGKPNILEELAQKMKFS 144
           V++GGLIR  RS EACKYLEEM+EKGMKAP+LDYNKFA+D S+ G   ILEELA+KM F 
Sbjct: 556 VYIGGLIRQDRSGEACKYLEEMLEKGMKAPKLDYNKFASDISKTGNAVILEELARKMNFV 615

Query: 143 GKFEVSNVFARWSEMMKKSIKQREPSHVGRR 51
           GKFEVSNV A W++MMKKS K+REP+   R+
Sbjct: 616 GKFEVSNVLASWADMMKKSAKRREPTTSARQ 646



 Score = 73.2 bits (178), Expect = 2e-10
 Identities = 55/257 (21%), Positives = 111/257 (43%), Gaps = 2/257 (0%)
 Frame = -1

Query: 1372 KEGFEHDSRTYNSMMGILGKTRQLESMVAMMEEMGKKGLLT-METFSIAIRSFAGAREMK 1196
            K+ F    +TY  ++    + + L     +  EM  +G    +   ++ +      ++  
Sbjct: 334  KDRFTPSLQTYTILLSGWCRLKNLLEAGRVWNEMIDRGFNPDVVAHNVMLEGLLKCKKKS 393

Query: 1195 KAIGIFELMKKYNYKAGVDTFNSLLDALGRAKLGKEAQALFEKLKDR-FPPDMRTYSVLL 1019
             AI +FE+MK       V ++  ++    + KL  EA   F+ + DR   PD   Y+ L+
Sbjct: 394  DAIKLFEIMKAKGPSPNVRSYTIMIQDFCKQKLMGEAIEYFDVMVDRGCQPDAALYTCLI 453

Query: 1018 AGWCKVKNLMEAGRVWNEMIDKGLKPDIVAHHIMLEGLLRGRRESEAIKLFELMKAKGPS 839
             G+ + K +     +  EM ++G  PD   ++ +++ +       +A+++++ M   G  
Sbjct: 454  TGFGRQKKMDMVYSLLKEMRERGCPPDGRTYNALIKLMTSQHMPDDAVRIYKKMIQSGIK 513

Query: 838  PSVRSYTILIRDLCKRNKMEEAVNYFNEMVDIGCDLDPAIYTCLMVGFGNRKNLEKVYGL 659
            P++ +Y ++++        E     ++EM   GC  D   Y   + G   +    +    
Sbjct: 514  PTIHTYNMIMKSYFVTKNYEMGHEIWDEMHQKGCCPDDNSYIVYIGGLIRQDRSGEACKY 573

Query: 658  LKEMKEKGCPPDGLTYN 608
            L+EM EKG     L YN
Sbjct: 574  LEEMLEKGMKAPKLDYN 590



 Score = 63.9 bits (154), Expect = 2e-07
 Identities = 55/228 (24%), Positives = 90/228 (39%), Gaps = 37/228 (16%)
 Frame = -1

Query: 1366 GFEHDSRTYNSMMGILGKTRQLESMVAMMEEMGKKGLL-TMETFSIAIRSFAGAREMKKA 1190
            GF  D   +N M+  L K ++    + + E M  KG    + +++I I+ F   + M +A
Sbjct: 371  GFNPDVVAHNVMLEGLLKCKKKSDAIKLFEIMKAKGPSPNVRSYTIMIQDFCKQKLMGEA 430

Query: 1189 IGIFELMKKYNYKAGVDTFNSLLDALGRAKLGKEAQALFEKLKDR-FPPDMRTYSVLLA- 1016
            I  F++M     +     +  L+   GR K      +L +++++R  PPD RTY+ L+  
Sbjct: 431  IEYFDVMVDRGCQPDAALYTCLITGFGRQKKMDMVYSLLKEMRERGCPPDGRTYNALIKL 490

Query: 1015 ----------------------------------GWCKVKNLMEAGRVWNEMIDKGLKPD 938
                                               +   KN      +W+EM  KG  PD
Sbjct: 491  MTSQHMPDDAVRIYKKMIQSGIKPTIHTYNMIMKSYFVTKNYEMGHEIWDEMHQKGCCPD 550

Query: 937  IVAHHIMLEGLLRGRRESEAIKLFELMKAKGPSPSVRSYTILIRDLCK 794
              ++ + + GL+R  R  EA K  E M  KG       Y     D+ K
Sbjct: 551  DNSYIVYIGGLIRQDRSGEACKYLEEMLEKGMKAPKLDYNKFASDISK 598


>ref|XP_002515292.1| pentatricopeptide repeat-containing protein, putative [Ricinus
            communis] gi|223545772|gb|EEF47276.1| pentatricopeptide
            repeat-containing protein, putative [Ricinus communis]
          Length = 533

 Score =  535 bits (1377), Expect = e-149
 Identities = 260/357 (72%), Positives = 300/357 (84%)
 Frame = -1

Query: 1564 SKSDGKEVERVCKVINELFASDRNMEGILDQCGIXXXXXXXXXXXDRFKHARKPAFRFFG 1385
            S +D  EV+RVCKVI+ELFA DRNME +LD+CGI           +RF HARKPAFRFF 
Sbjct: 58   SSADPVEVDRVCKVIDELFALDRNMEAVLDECGINLSHDLVIDVLERFCHARKPAFRFFC 117

Query: 1384 WAGEKEGFEHDSRTYNSMMGILGKTRQLESMVAMMEEMGKKGLLTMETFSIAIRSFAGAR 1205
            WAGEK+GFEHDSRTYNSMM IL KTRQ E++V+M+EEMG KG+LTM+TFSIA+R+FA A+
Sbjct: 118  WAGEKQGFEHDSRTYNSMMSILAKTRQFETVVSMLEEMGGKGVLTMDTFSIAMRAFAAAK 177

Query: 1204 EMKKAIGIFELMKKYNYKAGVDTFNSLLDALGRAKLGKEAQALFEKLKDRFPPDMRTYSV 1025
            E KKA+ +FELMKKYNYK GV+T N LLD+LGRAKLGKEAQALFE LK RF P++RTY+V
Sbjct: 178  ERKKAVAMFELMKKYNYKVGVETINHLLDSLGRAKLGKEAQALFENLKGRFTPNLRTYTV 237

Query: 1024 LLAGWCKVKNLMEAGRVWNEMIDKGLKPDIVAHHIMLEGLLRGRRESEAIKLFELMKAKG 845
            LL GWCKVKNLMEAG VWNEMIDKG KPDIVAH+IMLEGLLR ++ S+AIKLF +MKAKG
Sbjct: 238  LLNGWCKVKNLMEAGSVWNEMIDKGFKPDIVAHNIMLEGLLRSKQRSDAIKLFMVMKAKG 297

Query: 844  PSPSVRSYTILIRDLCKRNKMEEAVNYFNEMVDIGCDLDPAIYTCLMVGFGNRKNLEKVY 665
            PSP VRSYTILIR LC+++KMEEAV YF EM+D GC  D A+YTCL+ GFGNRK ++ VY
Sbjct: 298  PSPDVRSYTILIRYLCRQSKMEEAVEYFQEMIDSGCKPDAAVYTCLITGFGNRKRMDMVY 357

Query: 664  GLLKEMKEKGCPPDGLTYNALIKLMTNRQMPDDAVRIYKKMIQNGHKPTIHTYKCQM 494
             LLKEMKE+GCPPDGLTYNALIKLMT  +MPDDA RIYKKM Q+G +PTIHTY   M
Sbjct: 358  DLLKEMKEEGCPPDGLTYNALIKLMTRLKMPDDAARIYKKMTQSGIEPTIHTYNMIM 414



 Score =  228 bits (580), Expect = 6e-57
 Identities = 105/146 (71%), Positives = 124/146 (84%)
 Frame = -3

Query: 509 IQMPDDAVRIYKKMIQNGHKPTIHTYNMMMKSYFHLKNYEMGYAVWEEMASKGCCPDDNS 330
           ++MPDDA RIYKKM Q+G +PTIHTYNM+MKSYF  +NYEMG AVW+EM+ KG CPDDNS
Sbjct: 385 LKMPDDAARIYKKMTQSGIEPTIHTYNMIMKSYFQTRNYEMGRAVWDEMSRKGFCPDDNS 444

Query: 329 YIVFVGGLIRHGRSEEACKYLEEMIEKGMKAPQLDYNKFAADFSRAGKPNILEELAQKMK 150
           Y V +GGLI  GRS EACKYLEEM+EKGMKAPQLDYNKF AD SR G P+ILEELAQ++K
Sbjct: 445 YTVLIGGLISQGRSGEACKYLEEMLEKGMKAPQLDYNKFGADLSRGGNPDILEELAQRLK 504

Query: 149 FSGKFEVSNVFARWSEMMKKSIKQRE 72
           FSGKF VSNV A W+ M++K +K+R+
Sbjct: 505 FSGKFGVSNVLASWAGMIQKRVKRRD 530



 Score =  109 bits (272), Expect = 3e-21
 Identities = 67/285 (23%), Positives = 134/285 (47%), Gaps = 1/285 (0%)
 Frame = -1

Query: 1375 EKEGFEHDSRTYNSMMGILGKTRQLESMVAMMEEMGKKGLLTMETFSIAIRSFAGAREMK 1196
            +K  ++    T N ++  LG+ +  +   A+ E +  +    + T+++ +  +   + + 
Sbjct: 190  KKYNYKVGVETINHLLDSLGRAKLGKEAQALFENLKGRFTPNLRTYTVLLNGWCKVKNLM 249

Query: 1195 KAIGIFELMKKYNYKAGVDTFNSLLDALGRAKLGKEAQALFEKLKDRFP-PDMRTYSVLL 1019
            +A  ++  M    +K  +   N +L+ L R+K   +A  LF  +K + P PD+R+Y++L+
Sbjct: 250  EAGSVWNEMIDKGFKPDIVAHNIMLEGLLRSKQRSDAIKLFMVMKAKGPSPDVRSYTILI 309

Query: 1018 AGWCKVKNLMEAGRVWNEMIDKGLKPDIVAHHIMLEGLLRGRRESEAIKLFELMKAKGPS 839
               C+   + EA   + EMID G KPD   +  ++ G    +R      L + MK +G  
Sbjct: 310  RYLCRQSKMEEAVEYFQEMIDSGCKPDAAVYTCLITGFGNRKRMDMVYDLLKEMKEEGCP 369

Query: 838  PSVRSYTILIRDLCKRNKMEEAVNYFNEMVDIGCDLDPAIYTCLMVGFGNRKNLEKVYGL 659
            P   +Y  LI+ + +    ++A   + +M   G +     Y  +M  +   +N E    +
Sbjct: 370  PDGLTYNALIKLMTRLKMPDDAARIYKKMTQSGIEPTIHTYNMIMKSYFQTRNYEMGRAV 429

Query: 658  LKEMKEKGCPPDGLTYNALIKLMTNRQMPDDAVRIYKKMIQNGHK 524
              EM  KG  PD  +Y  LI  + ++    +A +  ++M++ G K
Sbjct: 430  WDEMSRKGFCPDDNSYTVLIGGLISQGRSGEACKYLEEMLEKGMK 474



 Score = 70.1 bits (170), Expect = 2e-09
 Identities = 47/194 (24%), Positives = 88/194 (45%), Gaps = 2/194 (1%)
 Frame = -1

Query: 1369 EGFEHDSRTYNSMMGILGKTRQLESMVAMMEEMGKKGLLT-METFSIAIRSFAGAREMKK 1193
            +G   D R+Y  ++  L +  ++E  V   +EM   G       ++  I  F   + M  
Sbjct: 296  KGPSPDVRSYTILIRYLCRQSKMEEAVEYFQEMIDSGCKPDAAVYTCLITGFGNRKRMDM 355

Query: 1192 AIGIFELMKKYNYKAGVDTFNSLLDALGRAKLGKEAQALFEKL-KDRFPPDMRTYSVLLA 1016
               + + MK+        T+N+L+  + R K+  +A  +++K+ +    P + TY++++ 
Sbjct: 356  VYDLLKEMKEEGCPPDGLTYNALIKLMTRLKMPDDAARIYKKMTQSGIEPTIHTYNMIMK 415

Query: 1015 GWCKVKNLMEAGRVWNEMIDKGLKPDIVAHHIMLEGLLRGRRESEAIKLFELMKAKGPSP 836
             + + +N      VW+EM  KG  PD  ++ +++ GL+   R  EA K  E M  KG   
Sbjct: 416  SYFQTRNYEMGRAVWDEMSRKGFCPDDNSYTVLIGGLISQGRSGEACKYLEEMLEKGMKA 475

Query: 835  SVRSYTILIRDLCK 794
                Y     DL +
Sbjct: 476  PQLDYNKFGADLSR 489



 Score = 63.9 bits (154), Expect = 2e-07
 Identities = 34/118 (28%), Positives = 58/118 (49%)
 Frame = -3

Query: 494 DAVRIYKKMIQNGHKPTIHTYNMMMKSYFHLKNYEMGYAVWEEMASKGCCPDDNSYIVFV 315
           +A  ++ +MI  G KP I  +N+M++     K       ++  M +KG  PD  SY + +
Sbjct: 250 EAGSVWNEMIDKGFKPDIVAHNIMLEGLLRSKQRSDAIKLFMVMKAKGPSPDVRSYTILI 309

Query: 314 GGLIRHGRSEEACKYLEEMIEKGMKAPQLDYNKFAADFSRAGKPNILEELAQKMKFSG 141
             L R  + EEA +Y +EMI+ G K     Y      F    + +++ +L ++MK  G
Sbjct: 310 RYLCRQSKMEEAVEYFQEMIDSGCKPDAAVYTCLITGFGNRKRMDMVYDLLKEMKEEG 367