BLASTX nr result

ID: Coptis21_contig00014898 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00014898
         (889 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002326133.1| predicted protein [Populus trichocarpa] gi|2...   291   1e-76
gb|ABG34279.1| polygalacturonase [Eucalyptus globulus subsp. glo...   291   1e-76
ref|XP_002516244.1| polygalacturonase, putative [Ricinus communi...   288   9e-76
ref|XP_002277239.1| PREDICTED: probable polygalacturonase [Vitis...   285   1e-74
emb|CAN69988.1| hypothetical protein VITISV_024399 [Vitis vinifera]   283   4e-74

>ref|XP_002326133.1| predicted protein [Populus trichocarpa] gi|222833326|gb|EEE71803.1|
           predicted protein [Populus trichocarpa]
          Length = 495

 Score =  291 bits (745), Expect = 1e-76
 Identities = 140/185 (75%), Positives = 157/185 (84%)
 Frame = +3

Query: 3   IRNLVVQSMVSAXXXXXXXXXXXXXNVRVENVIAWNSRRGMRIKTAPGRGGYIRHITYEN 182
           IRNLVV+SMVSA             NV VENV+ W+SRR +RIKTAPGRGGY+RHITY N
Sbjct: 311 IRNLVVRSMVSAGISIGSEMSGGVSNVTVENVLVWSSRRAVRIKTAPGRGGYVRHITYRN 370

Query: 183 VTFDNVRVGIVIKTDYNEHADDGYDRKAFPILGNISFIGIHGQGVRVPVRLHGSDDIPLR 362
           +TFDNVRVGIVIKTDYNEH D+GYD KA PILG+ISF GIHGQGVRVPVR+HGS +IP+R
Sbjct: 371 LTFDNVRVGIVIKTDYNEHPDEGYDPKAVPILGDISFTGIHGQGVRVPVRIHGSQEIPVR 430

Query: 363 NLTFRDMSVGTTYKKKHIFQCAFVQGRVIGTIFPAPCDNLDLYNEQEQLVMRSSSQNITD 542
           N+TF DMSVG TYKKKHIFQCAFVQGRVIGT+FPAPC+NLD Y+EQ +LV RS SQN+TD
Sbjct: 431 NVTFWDMSVGLTYKKKHIFQCAFVQGRVIGTVFPAPCENLDRYDEQGKLVKRSVSQNLTD 490

Query: 543 IDYDF 557
           IDYDF
Sbjct: 491 IDYDF 495


>gb|ABG34279.1| polygalacturonase [Eucalyptus globulus subsp. globulus]
          Length = 201

 Score =  291 bits (745), Expect = 1e-76
 Identities = 139/184 (75%), Positives = 159/184 (86%)
 Frame = +3

Query: 3   IRNLVVQSMVSAXXXXXXXXXXXXXNVRVENVIAWNSRRGMRIKTAPGRGGYIRHITYEN 182
           IRNLVV+SMVSA             NV VEN+  W+SRR +RIKTAPGRGGY++ ITY N
Sbjct: 17  IRNLVVRSMVSAGISIGSEMSGGVSNVTVENLPVWDSRRAVRIKTAPGRGGYVQDITYRN 76

Query: 183 VTFDNVRVGIVIKTDYNEHADDGYDRKAFPILGNISFIGIHGQGVRVPVRLHGSDDIPLR 362
           +TF+NVRVGIVIKTDYNEH D+GYDRKAFPIL  ISFIG+HGQGVRVPVR+HGS++IP+R
Sbjct: 77  ITFENVRVGIVIKTDYNEHPDEGYDRKAFPILQRISFIGVHGQGVRVPVRIHGSEEIPVR 136

Query: 363 NLTFRDMSVGTTYKKKHIFQCAFVQGRVIGTIFPAPCDNLDLYNEQEQLVMRSSSQNITD 542
           N+TF+DMSVG TYKKKHIFQCAFVQGRVIG+IFPAPC+NLDLY+EQE LV RS+SQNITD
Sbjct: 137 NVTFQDMSVGLTYKKKHIFQCAFVQGRVIGSIFPAPCENLDLYDEQENLVKRSASQNITD 196

Query: 543 IDYD 554
           IDYD
Sbjct: 197 IDYD 200


>ref|XP_002516244.1| polygalacturonase, putative [Ricinus communis]
           gi|223544730|gb|EEF46246.1| polygalacturonase, putative
           [Ricinus communis]
          Length = 494

 Score =  288 bits (738), Expect = 9e-76
 Identities = 136/185 (73%), Positives = 158/185 (85%)
 Frame = +3

Query: 3   IRNLVVQSMVSAXXXXXXXXXXXXXNVRVENVIAWNSRRGMRIKTAPGRGGYIRHITYEN 182
           IRNLVV+SMVSA             N+ VEN++ W+SRR +RIKTAPGRGGY+RHITY N
Sbjct: 310 IRNLVVRSMVSAGISIGSEMSGGVSNITVENLLVWSSRRAVRIKTAPGRGGYVRHITYRN 369

Query: 183 VTFDNVRVGIVIKTDYNEHADDGYDRKAFPILGNISFIGIHGQGVRVPVRLHGSDDIPLR 362
           +TFDNVRVGIVIKTDYNEH D+GYD KA P+L +ISF G+HGQGVRVPVR+HGS++IP+R
Sbjct: 370 LTFDNVRVGIVIKTDYNEHPDEGYDPKAVPVLRDISFTGVHGQGVRVPVRIHGSEEIPVR 429

Query: 363 NLTFRDMSVGTTYKKKHIFQCAFVQGRVIGTIFPAPCDNLDLYNEQEQLVMRSSSQNITD 542
           N+TF+DMSVG TYKKKHIFQCAFVQGRVIGTIFPAPC+NLD Y+EQ +LV RS SQN+TD
Sbjct: 430 NVTFQDMSVGLTYKKKHIFQCAFVQGRVIGTIFPAPCENLDRYDEQGRLVKRSVSQNLTD 489

Query: 543 IDYDF 557
           IDYDF
Sbjct: 490 IDYDF 494


>ref|XP_002277239.1| PREDICTED: probable polygalacturonase [Vitis vinifera]
           gi|297738532|emb|CBI27777.3| unnamed protein product
           [Vitis vinifera]
          Length = 493

 Score =  285 bits (729), Expect = 1e-74
 Identities = 131/185 (70%), Positives = 156/185 (84%)
 Frame = +3

Query: 3   IRNLVVQSMVSAXXXXXXXXXXXXXNVRVENVIAWNSRRGMRIKTAPGRGGYIRHITYEN 182
           IRNLV++SMVSA             NV VEN++ WNSRR +RIKT+PGRGGY++HI Y N
Sbjct: 309 IRNLVIRSMVSAGVSIGSEMSGGVSNVTVENLLVWNSRRAVRIKTSPGRGGYVQHINYRN 368

Query: 183 VTFDNVRVGIVIKTDYNEHADDGYDRKAFPILGNISFIGIHGQGVRVPVRLHGSDDIPLR 362
           +TFDNVRVGIVIKTDYNEH DDG+D KA PIL +ISF G+HGQGVRVPVR+HGS++IP++
Sbjct: 369 LTFDNVRVGIVIKTDYNEHPDDGFDPKALPILEDISFTGVHGQGVRVPVRIHGSEEIPVK 428

Query: 363 NLTFRDMSVGTTYKKKHIFQCAFVQGRVIGTIFPAPCDNLDLYNEQEQLVMRSSSQNITD 542
            +TFRDMSVG TYKKKHIFQCA+V+GRVIGT+FPAPC+NLD Y+EQEQL+  S SQN+TD
Sbjct: 429 KVTFRDMSVGITYKKKHIFQCAYVEGRVIGTVFPAPCENLDRYDEQEQLIKHSKSQNVTD 488

Query: 543 IDYDF 557
           IDYDF
Sbjct: 489 IDYDF 493


>emb|CAN69988.1| hypothetical protein VITISV_024399 [Vitis vinifera]
          Length = 509

 Score =  283 bits (724), Expect = 4e-74
 Identities = 131/185 (70%), Positives = 155/185 (83%)
 Frame = +3

Query: 3   IRNLVVQSMVSAXXXXXXXXXXXXXNVRVENVIAWNSRRGMRIKTAPGRGGYIRHITYEN 182
           IRNLV++SMVSA             NV VEN++ WNSRR +RIKT+PGRGGY++HI Y N
Sbjct: 325 IRNLVIRSMVSAGVSIGSEMSGGVSNVTVENLLVWNSRRAVRIKTSPGRGGYVQHINYRN 384

Query: 183 VTFDNVRVGIVIKTDYNEHADDGYDRKAFPILGNISFIGIHGQGVRVPVRLHGSDDIPLR 362
           +TFDNVRVGIVIKTDYNEH DDG+D KA PIL +ISF G+HGQGVRVPVR+HGS++IP++
Sbjct: 385 LTFDNVRVGIVIKTDYNEHPDDGFDPKALPILEDISFTGVHGQGVRVPVRIHGSEEIPVK 444

Query: 363 NLTFRDMSVGTTYKKKHIFQCAFVQGRVIGTIFPAPCDNLDLYNEQEQLVMRSSSQNITD 542
            +TFRDMSVG TYKKKHIFQCA+V+GRVIGT+FPAPC+NLD Y+EQEQL   S SQN+TD
Sbjct: 445 KVTFRDMSVGITYKKKHIFQCAYVEGRVIGTVFPAPCENLDRYDEQEQLXKHSXSQNVTD 504

Query: 543 IDYDF 557
           IDYDF
Sbjct: 505 IDYDF 509


Top