BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00014786
         (1763 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002284797.2| PREDICTED: tRNA pseudouridine synthase A, mi...   608   e-171
ref|XP_003610360.1| tRNA pseudouridine synthase [Medicago trunca...   607   e-171
ref|XP_003519139.1| PREDICTED: tRNA pseudouridine synthase A, mi...   602   e-169
ref|XP_002300673.1| predicted protein [Populus trichocarpa] gi|2...   598   e-168
emb|CBI18897.3| unnamed protein product [Vitis vinifera]              570   e-160

>ref|XP_002284797.2| PREDICTED: tRNA pseudouridine synthase A, mitochondrial-like [Vitis
            vinifera]
          Length = 503

 Score =  608 bits (1569), Expect = e-171
 Identities = 317/493 (64%), Positives = 368/493 (74%), Gaps = 50/493 (10%)
 Frame = +1

Query: 124  LKMSTTTSDDEEQTITNPNQADQKPRYKRRKIAIFLAYCGVGYQGMQKNPGAKTIEGELE 303
            +  +TTTSDDE+   T    A +KPRYKRRKIAIF AYCGVGYQGMQKNPGAKTIEG+LE
Sbjct: 13   MSQTTTTSDDEDCDTTT---ATKKPRYKRRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLE 69

Query: 304  EALYLSGAVPEHDRGKPKRFDWARSARTDKGVSAVGQVVSGRFYVDPPGFIDRLNSNLPN 483
            EAL+ SGAVPE DRG PKRFDWARSARTDKGVSAVGQVVSGRFY+DPPG ++RLNSNLP 
Sbjct: 70   EALFFSGAVPEQDRGHPKRFDWARSARTDKGVSAVGQVVSGRFYIDPPGLVERLNSNLPP 129

Query: 484  QIRIFGFNRVTSSFSAKKFCDRRRYVYLIPVFALDRNAHRDRESVLASLGSDNELVKCLE 663
            QIRIFGF RVT+SF+AKKFCDRRRYVYLIPVFALD ++H DRESVLAS+GS+NELVKCLE
Sbjct: 130  QIRIFGFKRVTASFNAKKFCDRRRYVYLIPVFALDPSSHPDRESVLASVGSENELVKCLE 189

Query: 664  CSERGRKVLGAMGKHYSGAKI-------VGSEDNKAXXXXXXXXXXXXXXMASVE---CG 813
            CSERGRKV+G MGK    +K+       V  E                  MAS +    G
Sbjct: 190  CSERGRKVVGIMGKRSFESKVSVDDREDVEGESKNIVGAAILKSEAKEESMASSDNRHDG 249

Query: 814  NG---------------------DEKGVLENGGGFS-------------------YGEKE 873
            N                      D +   +N  G S                   YG+KE
Sbjct: 250  NSISQPIKEGRCFQDNETSESTPDSRASAQNEPGVSHSEQSDKGENKLEKGSGFCYGDKE 309

Query: 874  KERFNRILSHYVGTHNFHNFTTRIKAEDPSAVRFIISFNANSVVTVDGMDFVKCEVVGQS 1053
            +ERFNRIL HYVGTHNFHNFTTRIKAEDPSA RFI+SF+ N++VTV+G++FVKCEVVGQS
Sbjct: 310  RERFNRILGHYVGTHNFHNFTTRIKAEDPSAQRFIVSFDGNTIVTVEGIEFVKCEVVGQS 369

Query: 1054 FMLHQIRKLVGLAVAIMRDCAPESLIETALQKDVRINVPTAPEVGLYLEECFFTSYNQKW 1233
            FMLHQIRK++GLAVAIMR+ APESL+ETAL KDV INVPTAPEVGLYL+ECFF+SYN+KW
Sbjct: 370  FMLHQIRKMIGLAVAIMRNVAPESLLETALLKDVNINVPTAPEVGLYLDECFFSSYNKKW 429

Query: 1234 KDTHEEISMEAYVEQAEDFKMKQVYSHIASMEQKEGSVAVWLHSLNLRNYPDLRFVEDNE 1413
            +D+HEE+SM+AY E+AE+FKMK VYSHIA+ E KEG VA+WLHSLN RNYPDL  + DN 
Sbjct: 430  RDSHEEVSMKAYAEEAEEFKMKHVYSHIAATEHKEGVVALWLHSLNHRNYPDL-CIGDNG 488

Query: 1414 TCTIGENVQVESI 1452
              + G+N + E++
Sbjct: 489  AASDGKNGEEETM 501


>ref|XP_003610360.1| tRNA pseudouridine synthase [Medicago truncatula]
            gi|355511415|gb|AES92557.1| tRNA pseudouridine synthase
            [Medicago truncatula] gi|388510220|gb|AFK43176.1| unknown
            [Medicago truncatula]
          Length = 530

 Score =  607 bits (1564), Expect = e-171
 Identities = 317/494 (64%), Positives = 357/494 (72%), Gaps = 53/494 (10%)
 Frame = +1

Query: 124  LKMSTTTSDDEEQTITNPNQADQKPRYKRRKIAIFLAYCGVGYQGMQKNPGAKTIEGELE 303
            +KMSTTTSDDE  T    +    K RYKRRK+AIF AYCGVGYQGMQKNPGAKTIEGELE
Sbjct: 29   VKMSTTTSDDEGCTTAEGS----KVRYKRRKVAIFFAYCGVGYQGMQKNPGAKTIEGELE 84

Query: 304  EALYLSGAVPEHDRGKPKRFDWARSARTDKGVSAVGQVVSGRFYVDPPGFIDRLNSNLPN 483
            EALY+SGAVPE DRG  KR+DWARSARTDKGVSAVGQVVSGRFY+DPPGF+DRLNSNLP+
Sbjct: 85   EALYVSGAVPEQDRGLSKRYDWARSARTDKGVSAVGQVVSGRFYIDPPGFVDRLNSNLPS 144

Query: 484  QIRIFGFNRVTSSFSAKKFCDRRRYVYLIPVFALDRNAHRDRESVLASLGSDNELVKCLE 663
            QIRIFGF RVT+SFSAKKFCDRRRYVYLIPVFALD   HRDRE+VLASLGS+NELVKCL 
Sbjct: 145  QIRIFGFKRVTASFSAKKFCDRRRYVYLIPVFALDPCCHRDRETVLASLGSENELVKCLP 204

Query: 664  CSERGRKVLGAMGKHYSGAKIVGSEDNKAXXXXXXXXXXXXXXMASVECGNGDEK----- 828
            CSERGRKV G +G      ++   +                     V    GD+      
Sbjct: 205  CSERGRKVEGVVGNSKRNLELEAVDVENGSSNKNDVVDSGVTKDVEVSLSKGDDNHLNKE 264

Query: 829  -------------------------------------GVLE-----------NGGGFSYG 864
                                                 G+LE           NG GF YG
Sbjct: 265  SINDNEGKVSVEEVNSKTVVSDQDEVAPINGGSENNLGILEEEKVNREDTAANGSGFCYG 324

Query: 865  EKEKERFNRILSHYVGTHNFHNFTTRIKAEDPSAVRFIISFNANSVVTVDGMDFVKCEVV 1044
            EKE+ERFN IL  YVGTHNFHNFTTRIK EDPSA RFIISF+A++ V V+GM+FVKCE+V
Sbjct: 325  EKERERFNNILKCYVGTHNFHNFTTRIKPEDPSAKRFIISFDASTTVVVEGMEFVKCEIV 384

Query: 1045 GQSFMLHQIRKLVGLAVAIMRDCAPESLIETALQKDVRINVPTAPEVGLYLEECFFTSYN 1224
            GQSFMLHQIRK++GLAVAIMR+CAPESLIE ALQKDV I VPTAPEVGLYL+ECFFTSYN
Sbjct: 385  GQSFMLHQIRKMMGLAVAIMRNCAPESLIEKALQKDVSITVPTAPEVGLYLDECFFTSYN 444

Query: 1225 QKWKDTHEEISMEAYVEQAEDFKMKQVYSHIASMEQKEGSVAVWLHSLNLRNYPDLRFVE 1404
            QKWKDTHEE+SM+AY ++AEDFKM+ +Y HIAS E KEG+V +WLHSLN RNYPDLR + 
Sbjct: 445  QKWKDTHEEVSMKAYEKEAEDFKMQYIYPHIASTEYKEGTVGLWLHSLNHRNYPDLRIL- 503

Query: 1405 DNETCTIGENVQVE 1446
            D E  T  + V+V+
Sbjct: 504  DGEGVTNDKKVEVD 517


>ref|XP_003519139.1| PREDICTED: tRNA pseudouridine synthase A, mitochondrial-like [Glycine
            max]
          Length = 548

 Score =  602 bits (1551), Expect = e-169
 Identities = 310/477 (64%), Positives = 358/477 (75%), Gaps = 49/477 (10%)
 Frame = +1

Query: 124  LKMSTTTSDDEEQTITNPNQADQKPRYKRRKIAIFLAYCGVGYQGMQKNPGAKTIEGELE 303
            LKMSTTTSDDEE           K RYKRRK+AIF AYCGVGYQGMQKNPGAKTIEG+LE
Sbjct: 29   LKMSTTTSDDEE--------TGTKKRYKRRKVAIFFAYCGVGYQGMQKNPGAKTIEGDLE 80

Query: 304  EALYLSGAVPEHDRGKPKRFDWARSARTDKGVSAVGQVVSGRFYVDPPGFIDRLNSNLPN 483
            EALY+SGAVPE DRG PKR+DWARSARTDKGVSAVGQVVSGRFY+DPPG +DRLNSNLP+
Sbjct: 81   EALYVSGAVPEQDRGVPKRYDWARSARTDKGVSAVGQVVSGRFYIDPPGLVDRLNSNLPS 140

Query: 484  QIRIFGFNRVTSSFSAKKFCDRRRYVYLIPVFALDRNAHRDRESVLASLGSDNELVKCLE 663
            QIRIFG+ RVT+SF+AKKFCDRRRYVYLIPVFALD + HRDRE+V+ASLGS NELVKCLE
Sbjct: 141  QIRIFGYKRVTASFNAKKFCDRRRYVYLIPVFALDPSCHRDRETVMASLGSGNELVKCLE 200

Query: 664  CSERGRKVLGAMGKHYSG---------AKIVGSEDNKAXXXXXXXXXXXXXXMASVECGN 816
            CSERGRKV+G +G              A I  + D+                  + E GN
Sbjct: 201  CSERGRKVVGLVGNRKQNLELEAVDVEAGISSNRDSGVTEDVEVSLSKGDDNHLNEESGN 260

Query: 817  GDEKG-----------------------------VLE-----------NGGGFSYGEKEK 876
             ++ G                             +LE           NG  F YGEKE+
Sbjct: 261  DNKGGMNCKTGLETVIPVQEEGTPLNGESVNNSDILEEEKVNGEDKPTNGSRFCYGEKER 320

Query: 877  ERFNRILSHYVGTHNFHNFTTRIKAEDPSAVRFIISFNANSVVTVDGMDFVKCEVVGQSF 1056
            ERFN+IL  +VGTHNFHNFTTR KAEDP+A R+IISFNAN+ + V+G++FVKCEVVGQSF
Sbjct: 321  ERFNKILKCFVGTHNFHNFTTRTKAEDPAARRYIISFNANTTLVVEGVEFVKCEVVGQSF 380

Query: 1057 MLHQIRKLVGLAVAIMRDCAPESLIETALQKDVRINVPTAPEVGLYLEECFFTSYNQKWK 1236
            MLHQIRK++GLAVAIMR+CAPESLI+ ALQ+DV INVPTAPEVGLYL+ECFFTSYNQKWK
Sbjct: 381  MLHQIRKMIGLAVAIMRNCAPESLIDEALQQDVNINVPTAPEVGLYLDECFFTSYNQKWK 440

Query: 1237 DTHEEISMEAYVEQAEDFKMKQVYSHIASMEQKEGSVAVWLHSLNLRNYPDLRFVED 1407
            D HEE+SM+AY ++A++FKMK +YSHIAS EQKEG+VA+WLHSLN RNYPDLR + +
Sbjct: 441  D-HEELSMKAYEKEADEFKMKYIYSHIASTEQKEGTVALWLHSLNHRNYPDLRVINE 496


>ref|XP_002300673.1| predicted protein [Populus trichocarpa] gi|222842399|gb|EEE79946.1|
            predicted protein [Populus trichocarpa]
          Length = 429

 Score =  598 bits (1542), Expect = e-168
 Identities = 297/406 (73%), Positives = 339/406 (83%), Gaps = 3/406 (0%)
 Frame = +1

Query: 190  QKPRYKRRKIAIFLAYCGVGYQGMQKNPGAKTIEGELEEALYLSGAVPEHDRGKPKRFDW 369
            +K RYKRRKIAIF AYCGVGYQGMQKNPGAKTIEG+LEEAL+ +GAVPE DRG PKR+DW
Sbjct: 10   KKQRYKRRKIAIFFAYCGVGYQGMQKNPGAKTIEGDLEEALFHAGAVPEQDRGIPKRYDW 69

Query: 370  ARSARTDKGVSAVGQVVSGRFYVDPPGFIDRLNSNLPNQIRIFGFNRVTSSFSAKKFCDR 549
            ARSARTDKGVSAVGQVVSGRFY+DPPG ++RL+SNL  Q RIFG+ RVT SF+AKKFCDR
Sbjct: 70   ARSARTDKGVSAVGQVVSGRFYIDPPGLVERLHSNLSPQFRIFGYKRVTGSFNAKKFCDR 129

Query: 550  RRYVYLIPVFALDRNAHRDRESVLASLGSDNELVKCLECSERGRKVLGAMGKHYSGAKIV 729
            RRYVYLIPVFALD  +HRDRESVLASL S +EL+KCLECSERGRKV GA+GK  S     
Sbjct: 130  RRYVYLIPVFALDPCSHRDRESVLASLRSGSELIKCLECSERGRKVAGAVGKR-SFELTD 188

Query: 730  GSEDNKAXXXXXXXXXXXXXXMASVECGNGDE---KGVLENGGGFSYGEKEKERFNRILS 900
             S ++K               + SVE G+ ++   K  +  G  F YGEKEKERFNRIL 
Sbjct: 189  NSSNDKDASVKSEIKEEVDEIIVSVENGDDEKTKSKEEMVKGSSFCYGEKEKERFNRILG 248

Query: 901  HYVGTHNFHNFTTRIKAEDPSAVRFIISFNANSVVTVDGMDFVKCEVVGQSFMLHQIRKL 1080
            +YVG+HNFHNFTTR KAEDPSA R+I+SF A + V V+G++FVKCEVVGQSFMLHQIRK+
Sbjct: 249  YYVGSHNFHNFTTRTKAEDPSARRYIVSFEAKTTVNVEGIEFVKCEVVGQSFMLHQIRKM 308

Query: 1081 VGLAVAIMRDCAPESLIETALQKDVRINVPTAPEVGLYLEECFFTSYNQKWKDTHEEISM 1260
            +G+AVAIMR+CAPESLI+TALQKDV INVPTAPEVGLYL+ECFFTSYNQKWKD+HEEISM
Sbjct: 309  IGVAVAIMRNCAPESLIQTALQKDVNINVPTAPEVGLYLDECFFTSYNQKWKDSHEEISM 368

Query: 1261 EAYVEQAEDFKMKQVYSHIASMEQKEGSVAVWLHSLNLRNYPDLRF 1398
            + Y E+AEDFKMK +YSHIA+ E KEGSVA+WLHSLN RNYPDLRF
Sbjct: 369  KDYEEEAEDFKMKHIYSHIATTEHKEGSVALWLHSLNHRNYPDLRF 414


>emb|CBI18897.3| unnamed protein product [Vitis vinifera]
          Length = 419

 Score =  570 bits (1469), Expect = e-160
 Identities = 289/420 (68%), Positives = 334/420 (79%), Gaps = 22/420 (5%)
 Frame = +1

Query: 259  MQKNPGAKTIEGELEEALYLSGAVPEHDRGKPKRFDWARSARTDKGVSAVGQVVSGRFYV 438
            MQKNPGAKTIEG+LEEAL+ SGAVPE DRG PKRFDWARSARTDKGVSAVGQVVSGRFY+
Sbjct: 1    MQKNPGAKTIEGDLEEALFFSGAVPEQDRGHPKRFDWARSARTDKGVSAVGQVVSGRFYI 60

Query: 439  DPPGFIDRLNSNLPNQIRIFGFNRVTSSFSAKKFCDRRRYVYLIPVFALDRNAHRDRESV 618
            DPPG ++RLNSNLP QIRIFGF RVT+SF+AKKFCDRRRYVYLIPVFALD ++H DRESV
Sbjct: 61   DPPGLVERLNSNLPPQIRIFGFKRVTASFNAKKFCDRRRYVYLIPVFALDPSSHPDRESV 120

Query: 619  LASLGSDNELVKCLECSERGRKVLGAMGKHYSGAK--------------IVGSE------ 738
            LAS+GS+NELVKCLECSERGRKV+G MGK    +K              IV SE      
Sbjct: 121  LASVGSENELVKCLECSERGRKVVGIMGKRKGESKNIVQLGIPSNDEAAIVNSEVQEEIK 180

Query: 739  --DNKAXXXXXXXXXXXXXXMASVECGNGDEKGVLENGGGFSYGEKEKERFNRILSHYVG 912
               N                 A+     G+ K  LE G GF YG+KE+ERFNRIL HYVG
Sbjct: 181  ATSNNNNIDANNSISETIKEEAAKLSSEGENK--LEKGSGFCYGDKERERFNRILGHYVG 238

Query: 913  THNFHNFTTRIKAEDPSAVRFIISFNANSVVTVDGMDFVKCEVVGQSFMLHQIRKLVGLA 1092
            THNFHNFTTRIKAEDPSA RFI+SF+ N++VTV+G++FVKCEVVGQSFMLHQIRK++GLA
Sbjct: 239  THNFHNFTTRIKAEDPSAQRFIVSFDGNTIVTVEGIEFVKCEVVGQSFMLHQIRKMIGLA 298

Query: 1093 VAIMRDCAPESLIETALQKDVRINVPTAPEVGLYLEECFFTSYNQKWKDTHEEISMEAYV 1272
            VAIMR+ APESL+ETAL KDV INVPTAPEVGLYL+ECFF+SYN+KW+D+HEE+SM+AY 
Sbjct: 299  VAIMRNVAPESLLETALLKDVNINVPTAPEVGLYLDECFFSSYNKKWRDSHEEVSMKAYA 358

Query: 1273 EQAEDFKMKQVYSHIASMEQKEGSVAVWLHSLNLRNYPDLRFVEDNETCTIGENVQVESI 1452
            E+AE+FKMK VYSHIA+ E KEG VA+WLHSLN RNYPDL  + DN   + G+N + E++
Sbjct: 359  EEAEEFKMKHVYSHIAATEHKEGVVALWLHSLNHRNYPDL-CIGDNGAASDGKNGEEETM 417