BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00013959
         (692 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002511313.1| pentatricopeptide repeat-containing protein,...   242   6e-62
ref|XP_002277390.1| PREDICTED: pentatricopeptide repeat-containi...   241   8e-62
ref|XP_004138087.1| PREDICTED: pentatricopeptide repeat-containi...   233   4e-59
ref|XP_002321639.1| predicted protein [Populus trichocarpa] gi|2...   231   8e-59
ref|XP_003550712.1| PREDICTED: pentatricopeptide repeat-containi...   228   1e-57

>ref|XP_002511313.1| pentatricopeptide repeat-containing protein, putative [Ricinus
            communis] gi|223550428|gb|EEF51915.1| pentatricopeptide
            repeat-containing protein, putative [Ricinus communis]
          Length = 627

 Score =  242 bits (617), Expect = 6e-62
 Identities = 117/228 (51%), Positives = 153/228 (67%)
 Frame = -3

Query: 690  KYEATGQTFIKSVYDGIHRSLTTVGRFDEAEKFLDTMRNAGYEPDNITYSNIVFGFCKAG 511
            KYEATG +  K+VYDGIHRSLT++G FDEA K +  M+ AGYEPDNITYS +VFG CKA 
Sbjct: 360  KYEATGNSLSKAVYDGIHRSLTSIGNFDEAAKMMKCMQTAGYEPDNITYSQLVFGLCKAR 419

Query: 510  RMEEVCEMLGEREAQGYVLDFRTWALLIQRHCLAGEIDQALNFFAEMLEKNFDADPNLLD 331
            R+EE CE+L E EA G + D +TW +LIQ HC+A E+ +AL   A+M+EK+ D D +LL 
Sbjct: 420  RLEEACEVLDEMEAHGCLPDIKTWTILIQGHCVANEVGKALMCLAKMMEKHCDPDADLLA 479

Query: 330  VLVNGLCSKGRVDGAYSLVLETVEKVNMRPLLDTYKNLIQNXXXXXXXXXXXXXXRQMKI 151
            VL+N   S+ R+DGAY+L ++ V+K  +RP   TYK LI+               R MK 
Sbjct: 480  VLINAFLSQKRIDGAYTLFMDMVDKARLRPWQATYKLLIEKLLEVRKLEEALNLLRLMKQ 539

Query: 150  HEFPPFEEPFYDYISKFGMVDDAIDYFTALRIRKHPTNSTYSRAIESF 7
            H  PPF EPF  YIS+FG VDDA D+  AL ++++P+ S Y    +SF
Sbjct: 540  HNHPPFPEPFVQYISRFGTVDDAADFLKALSVKEYPSTSAYLNVFQSF 587


>ref|XP_002277390.1| PREDICTED: pentatricopeptide repeat-containing protein At3g48250,
            chloroplastic-like [Vitis vinifera]
          Length = 631

 Score =  241 bits (616), Expect = 8e-62
 Identities = 118/228 (51%), Positives = 155/228 (67%)
 Frame = -3

Query: 690  KYEATGQTFIKSVYDGIHRSLTTVGRFDEAEKFLDTMRNAGYEPDNITYSNIVFGFCKAG 511
            KYEA G +  K+VYDGIHRSLT+VGRFDEA K +++MR+AG EPDNITYS +V+G CKA 
Sbjct: 362  KYEAVGNSLCKAVYDGIHRSLTSVGRFDEAGKIMESMRSAGCEPDNITYSQLVYGLCKAR 421

Query: 510  RMEEVCEMLGEREAQGYVLDFRTWALLIQRHCLAGEIDQALNFFAEMLEKNFDADPNLLD 331
            ++EE C++L E EA G V D +TW +LIQ HC A E+D+AL  FA+M+EKN DAD +LL+
Sbjct: 422  KLEEACKLLDEMEACGCVPDIKTWTILIQGHCAAKEVDKALICFAKMMEKNCDADADLLE 481

Query: 330  VLVNGLCSKGRVDGAYSLVLETVEKVNMRPLLDTYKNLIQNXXXXXXXXXXXXXXRQMKI 151
            VL+NG  S+ R+DGAY L++E V   ++ P   TYK +I                  MK 
Sbjct: 482  VLINGFLSQKRIDGAYKLLVEMVNTAHLVPWQATYKLMINKLLGVRKLEEAINLLHLMKK 541

Query: 150  HEFPPFEEPFYDYISKFGMVDDAIDYFTALRIRKHPTNSTYSRAIESF 7
              +PPF EPF +YISKFG V+DA ++  AL  +K+P+ S Y    ESF
Sbjct: 542  QNYPPFPEPFIEYISKFGTVEDAGEFLNALSAKKYPSQSAYVHVFESF 589


>ref|XP_004138087.1| PREDICTED: pentatricopeptide repeat-containing protein At3g48250,
            chloroplastic-like [Cucumis sativus]
            gi|449524136|ref|XP_004169079.1| PREDICTED:
            pentatricopeptide repeat-containing protein At3g48250,
            chloroplastic-like [Cucumis sativus]
          Length = 632

 Score =  233 bits (593), Expect = 4e-59
 Identities = 114/228 (50%), Positives = 153/228 (67%)
 Frame = -3

Query: 690  KYEATGQTFIKSVYDGIHRSLTTVGRFDEAEKFLDTMRNAGYEPDNITYSNIVFGFCKAG 511
            K+EATG +  K++YDGIHRSLT+ G+FD+AE  + +MRNAGYEPDN+TYS +VFG CKA 
Sbjct: 355  KFEATGYSLSKAMYDGIHRSLTSTGKFDDAENIVKSMRNAGYEPDNVTYSQLVFGLCKAR 414

Query: 510  RMEEVCEMLGEREAQGYVLDFRTWALLIQRHCLAGEIDQALNFFAEMLEKNFDADPNLLD 331
            R+EE  ++L E EAQG + D +TW +LIQ HC A E+D AL  FA+M+EKN D D +LLD
Sbjct: 415  RLEEARKVLDEMEAQGCIPDIKTWTILIQGHCNANELDIALVCFAKMIEKNCDPDADLLD 474

Query: 330  VLVNGLCSKGRVDGAYSLVLETVEKVNMRPLLDTYKNLIQNXXXXXXXXXXXXXXRQMKI 151
            VL++G  ++ +++GAY L++E   K ++RP   TYK LI+N              R MK 
Sbjct: 475  VLISGFLNQKKLNGAYQLLIELTNKAHVRPWQATYKQLIKNLLEVRKLEEAIALLRLMKK 534

Query: 150  HEFPPFEEPFYDYISKFGMVDDAIDYFTALRIRKHPTNSTYSRAIESF 7
              +PPF EPF  YISKFG V DA D+   L  +++P+ S Y     SF
Sbjct: 535  QNYPPFPEPFVQYISKFGTVQDADDFLKVLSSKEYPSVSAYLHIFNSF 582


>ref|XP_002321639.1| predicted protein [Populus trichocarpa] gi|222868635|gb|EEF05766.1|
           predicted protein [Populus trichocarpa]
          Length = 476

 Score =  231 bits (590), Expect = 8e-59
 Identities = 111/229 (48%), Positives = 154/229 (67%)
 Frame = -3

Query: 687 YEATGQTFIKSVYDGIHRSLTTVGRFDEAEKFLDTMRNAGYEPDNITYSNIVFGFCKAGR 508
           Y+ATG +  KSVYDG+HRS T+ G+FDEAEK +  MR+AGYEPDNITYS +VFG CK+ R
Sbjct: 210 YKATGNSLSKSVYDGMHRSFTSAGKFDEAEKIVKAMRDAGYEPDNITYSQLVFGLCKSKR 269

Query: 507 MEEVCEMLGEREAQGYVLDFRTWALLIQRHCLAGEIDQALNFFAEMLEKNFDADPNLLDV 328
           +EE C++L E EA G + D +TW +LIQ H  A ++D+ L    +M EKN D D +LLDV
Sbjct: 270 LEEACKVLDEMEAGGCIPDIKTWTILIQGHFAANQVDKGLLCLVKMTEKNTDPDADLLDV 329

Query: 327 LVNGLCSKGRVDGAYSLVLETVEKVNMRPLLDTYKNLIQNXXXXXXXXXXXXXXRQMKIH 148
           LV G  S+ ++DGAY+ ++E V K+ + P   TYK LI+               R MK H
Sbjct: 330 LVKGFLSQRKMDGAYTFLVEMVNKLRLVPWQATYKLLIEKLLQVRKLEEATDLLRLMKKH 389

Query: 147 EFPPFEEPFYDYISKFGMVDDAIDYFTALRIRKHPTNSTYSRAIESFCK 1
            +PPF EPF  YISKFG V+DA+++F  L ++++P++  Y R ++SF +
Sbjct: 390 NYPPFPEPFDQYISKFGTVEDAVNFFKVLSVKEYPSSVAYLRMLDSFLR 438


>ref|XP_003550712.1| PREDICTED: pentatricopeptide repeat-containing protein At3g48250,
            chloroplastic-like [Glycine max]
          Length = 635

 Score =  228 bits (580), Expect = 1e-57
 Identities = 112/227 (49%), Positives = 146/227 (64%)
 Frame = -3

Query: 690  KYEATGQTFIKSVYDGIHRSLTTVGRFDEAEKFLDTMRNAGYEPDNITYSNIVFGFCKAG 511
            KYE+TG T  K++YDGIHRSLT+ G FDEAE  + TMRNAGYEPDNITYS +VFG CK  
Sbjct: 361  KYESTGHTLSKAIYDGIHRSLTSAGNFDEAENIVRTMRNAGYEPDNITYSQMVFGLCKMR 420

Query: 510  RMEEVCEMLGEREAQGYVLDFRTWALLIQRHCLAGEIDQALNFFAEMLEKNFDADPNLLD 331
            R EE C++L + E+   + D +TW +LIQ HC A E+D+AL  FA+M+EK  D D +LLD
Sbjct: 421  RFEEACKVLEDMESSRCIPDIKTWTILIQGHCSANEVDKALLCFAKMIEKGCDPDADLLD 480

Query: 330  VLVNGLCSKGRVDGAYSLVLETVEKVNMRPLLDTYKNLIQNXXXXXXXXXXXXXXRQMKI 151
            VL +G  S+ R++GAY LV E   K  + P   TYK LI+               R MK 
Sbjct: 481  VLADGFLSQKRIEGAYELVAEISRKCRISPWQATYKKLIEKLLGVMKFEEALELLRLMKS 540

Query: 150  HEFPPFEEPFYDYISKFGMVDDAIDYFTALRIRKHPTNSTYSRAIES 10
            H +PP+  PF  YISKFG V+DA  +  AL ++ +P++  Y +  ES
Sbjct: 541  HNYPPYHLPFVPYISKFGSVEDAEAFLKALSVKSYPSHIVYVQVFES 587