BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00013958
         (699 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002277390.1| PREDICTED: pentatricopeptide repeat-containi...   249   4e-64
ref|XP_002511313.1| pentatricopeptide repeat-containing protein,...   236   2e-60
ref|XP_002321639.1| predicted protein [Populus trichocarpa] gi|2...   232   6e-59
ref|XP_003550712.1| PREDICTED: pentatricopeptide repeat-containi...   231   8e-59
ref|XP_004138087.1| PREDICTED: pentatricopeptide repeat-containi...   229   3e-58

>ref|XP_002277390.1| PREDICTED: pentatricopeptide repeat-containing protein At3g48250,
            chloroplastic-like [Vitis vinifera]
          Length = 631

 Score =  249 bits (636), Expect = 4e-64
 Identities = 126/232 (54%), Positives = 157/232 (67%)
 Frame = +3

Query: 3    KYEATGQMLLKSVYHGIHRSLTAAGKFGEAEKFLETMRNAGHEPDNITYSHIVFGLAKAG 182
            KYEA G  L K+VY GIHRSLT+ G+F EA K +E+MR+AG EPDNITYS +V+GL KA 
Sbjct: 362  KYEAVGNSLCKAVYDGIHRSLTSVGRFDEAGKIMESMRSAGCEPDNITYSQLVYGLCKAR 421

Query: 183  RMEEACKILGEMEARGYVLEFKTWEIIIQRHCLAGEIDQALNVFTQMLEKNFDADSGLLE 362
            ++EEACK+L EMEA G V + KTW I+IQ HC A E+D+AL  F +M+EKN DAD+ LLE
Sbjct: 422  KLEEACKLLDEMEACGCVPDIKTWTILIQGHCAAKEVDKALICFAKMMEKNCDADADLLE 481

Query: 363  VLVNGLCSKQRVDDAYTLVIEMVEKVKMKPLLDTYKNLIQKLLGXXXXXXXXXXXXXXXX 542
            VL+NG  S++R+D AY L++EMV    + P   TYK +I KLLG                
Sbjct: 482  VLINGFLSQKRIDGAYKLLVEMVNTAHLVPWQATYKLMINKLLGVRKLEEAINLLHLMKK 541

Query: 543  XXHPSYEEPFNNYISKFGTVDDANEYLTALRVKKYPPVLIYSHAIESFCKEG 698
              +P + EPF  YISKFGTV+DA E+L AL  KKYP    Y H  ESF +EG
Sbjct: 542  QNYPPFPEPFIEYISKFGTVEDAGEFLNALSAKKYPSQSAYVHVFESFFQEG 593


>ref|XP_002511313.1| pentatricopeptide repeat-containing protein, putative [Ricinus
            communis] gi|223550428|gb|EEF51915.1| pentatricopeptide
            repeat-containing protein, putative [Ricinus communis]
          Length = 627

 Score =  236 bits (603), Expect = 2e-60
 Identities = 117/232 (50%), Positives = 156/232 (67%)
 Frame = +3

Query: 3    KYEATGQMLLKSVYHGIHRSLTAAGKFGEAEKFLETMRNAGHEPDNITYSHIVFGLAKAG 182
            KYEATG  L K+VY GIHRSLT+ G F EA K ++ M+ AG+EPDNITYS +VFGL KA 
Sbjct: 360  KYEATGNSLSKAVYDGIHRSLTSIGNFDEAAKMMKCMQTAGYEPDNITYSQLVFGLCKAR 419

Query: 183  RMEEACKILGEMEARGYVLEFKTWEIIIQRHCLAGEIDQALNVFTQMLEKNFDADSGLLE 362
            R+EEAC++L EMEA G + + KTW I+IQ HC+A E+ +AL    +M+EK+ D D+ LL 
Sbjct: 420  RLEEACEVLDEMEAHGCLPDIKTWTILIQGHCVANEVGKALMCLAKMMEKHCDPDADLLA 479

Query: 363  VLVNGLCSKQRVDDAYTLVIEMVEKVKMKPLLDTYKNLIQKLLGXXXXXXXXXXXXXXXX 542
            VL+N   S++R+D AYTL ++MV+K +++P   TYK LI+KLL                 
Sbjct: 480  VLINAFLSQKRIDGAYTLFMDMVDKARLRPWQATYKLLIEKLLEVRKLEEALNLLRLMKQ 539

Query: 543  XXHPSYEEPFNNYISKFGTVDDANEYLTALRVKKYPPVLIYSHAIESFCKEG 698
              HP + EPF  YIS+FGTVDDA ++L AL VK+YP    Y +  +SF + G
Sbjct: 540  HNHPPFPEPFVQYISRFGTVDDAADFLKALSVKEYPSTSAYLNVFQSFFRAG 591


>ref|XP_002321639.1| predicted protein [Populus trichocarpa] gi|222868635|gb|EEF05766.1|
           predicted protein [Populus trichocarpa]
          Length = 476

 Score =  232 bits (591), Expect = 6e-59
 Identities = 115/231 (49%), Positives = 155/231 (67%)
 Frame = +3

Query: 6   YEATGQMLLKSVYHGIHRSLTAAGKFGEAEKFLETMRNAGHEPDNITYSHIVFGLAKAGR 185
           Y+ATG  L KSVY G+HRS T+AGKF EAEK ++ MR+AG+EPDNITYS +VFGL K+ R
Sbjct: 210 YKATGNSLSKSVYDGMHRSFTSAGKFDEAEKIVKAMRDAGYEPDNITYSQLVFGLCKSKR 269

Query: 186 MEEACKILGEMEARGYVLEFKTWEIIIQRHCLAGEIDQALNVFTQMLEKNFDADSGLLEV 365
           +EEACK+L EMEA G + + KTW I+IQ H  A ++D+ L    +M EKN D D+ LL+V
Sbjct: 270 LEEACKVLDEMEAGGCIPDIKTWTILIQGHFAANQVDKGLLCLVKMTEKNTDPDADLLDV 329

Query: 366 LVNGLCSKQRVDDAYTLVIEMVEKVKMKPLLDTYKNLIQKLLGXXXXXXXXXXXXXXXXX 545
           LV G  S++++D AYT ++EMV K+++ P   TYK LI+KLL                  
Sbjct: 330 LVKGFLSQRKMDGAYTFLVEMVNKLRLVPWQATYKLLIEKLLQVRKLEEATDLLRLMKKH 389

Query: 546 XHPSYEEPFNNYISKFGTVDDANEYLTALRVKKYPPVLIYSHAIESFCKEG 698
            +P + EPF+ YISKFGTV+DA  +   L VK+YP  + Y   ++SF +EG
Sbjct: 390 NYPPFPEPFDQYISKFGTVEDAVNFFKVLSVKEYPSSVAYLRMLDSFLREG 440


>ref|XP_003550712.1| PREDICTED: pentatricopeptide repeat-containing protein At3g48250,
            chloroplastic-like [Glycine max]
          Length = 635

 Score =  231 bits (590), Expect = 8e-59
 Identities = 116/232 (50%), Positives = 151/232 (65%)
 Frame = +3

Query: 3    KYEATGQMLLKSVYHGIHRSLTAAGKFGEAEKFLETMRNAGHEPDNITYSHIVFGLAKAG 182
            KYE+TG  L K++Y GIHRSLT+AG F EAE  + TMRNAG+EPDNITYS +VFGL K  
Sbjct: 361  KYESTGHTLSKAIYDGIHRSLTSAGNFDEAENIVRTMRNAGYEPDNITYSQMVFGLCKMR 420

Query: 183  RMEEACKILGEMEARGYVLEFKTWEIIIQRHCLAGEIDQALNVFTQMLEKNFDADSGLLE 362
            R EEACK+L +ME+   + + KTW I+IQ HC A E+D+AL  F +M+EK  D D+ LL+
Sbjct: 421  RFEEACKVLEDMESSRCIPDIKTWTILIQGHCSANEVDKALLCFAKMIEKGCDPDADLLD 480

Query: 363  VLVNGLCSKQRVDDAYTLVIEMVEKVKMKPLLDTYKNLIQKLLGXXXXXXXXXXXXXXXX 542
            VL +G  S++R++ AY LV E+  K ++ P   TYK LI+KLLG                
Sbjct: 481  VLADGFLSQKRIEGAYELVAEISRKCRISPWQATYKKLIEKLLGVMKFEEALELLRLMKS 540

Query: 543  XXHPSYEEPFNNYISKFGTVDDANEYLTALRVKKYPPVLIYSHAIESFCKEG 698
              +P Y  PF  YISKFG+V+DA  +L AL VK YP  ++Y    ES  +EG
Sbjct: 541  HNYPPYHLPFVPYISKFGSVEDAEAFLKALSVKSYPSHIVYVQVFESLFREG 592


>ref|XP_004138087.1| PREDICTED: pentatricopeptide repeat-containing protein At3g48250,
            chloroplastic-like [Cucumis sativus]
            gi|449524136|ref|XP_004169079.1| PREDICTED:
            pentatricopeptide repeat-containing protein At3g48250,
            chloroplastic-like [Cucumis sativus]
          Length = 632

 Score =  229 bits (585), Expect = 3e-58
 Identities = 114/232 (49%), Positives = 155/232 (66%)
 Frame = +3

Query: 3    KYEATGQMLLKSVYHGIHRSLTAAGKFGEAEKFLETMRNAGHEPDNITYSHIVFGLAKAG 182
            K+EATG  L K++Y GIHRSLT+ GKF +AE  +++MRNAG+EPDN+TYS +VFGL KA 
Sbjct: 355  KFEATGYSLSKAMYDGIHRSLTSTGKFDDAENIVKSMRNAGYEPDNVTYSQLVFGLCKAR 414

Query: 183  RMEEACKILGEMEARGYVLEFKTWEIIIQRHCLAGEIDQALNVFTQMLEKNFDADSGLLE 362
            R+EEA K+L EMEA+G + + KTW I+IQ HC A E+D AL  F +M+EKN D D+ LL+
Sbjct: 415  RLEEARKVLDEMEAQGCIPDIKTWTILIQGHCNANELDIALVCFAKMIEKNCDPDADLLD 474

Query: 363  VLVNGLCSKQRVDDAYTLVIEMVEKVKMKPLLDTYKNLIQKLLGXXXXXXXXXXXXXXXX 542
            VL++G  ++++++ AY L+IE+  K  ++P   TYK LI+ LL                 
Sbjct: 475  VLISGFLNQKKLNGAYQLLIELTNKAHVRPWQATYKQLIKNLLEVRKLEEAIALLRLMKK 534

Query: 543  XXHPSYEEPFNNYISKFGTVDDANEYLTALRVKKYPPVLIYSHAIESFCKEG 698
              +P + EPF  YISKFGTV DA+++L  L  K+YP V  Y H   SF  EG
Sbjct: 535  QNYPPFPEPFVQYISKFGTVQDADDFLKVLSSKEYPSVSAYLHIFNSFFNEG 586