BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00013933
         (1054 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002330255.1| predicted protein [Populus trichocarpa] gi|2...   214   9e-66
ref|XP_002318949.1| predicted protein [Populus trichocarpa] gi|2...   204   1e-64
ref|XP_004144746.1| PREDICTED: RNA polymerase II-associated prot...   209   1e-64
ref|XP_002277910.2| PREDICTED: RNA polymerase II-associated prot...   216   7e-54
emb|CBI39598.3| unnamed protein product [Vitis vinifera]              216   7e-54

>ref|XP_002330255.1| predicted protein [Populus trichocarpa] gi|222871711|gb|EEF08842.1|
            predicted protein [Populus trichocarpa]
          Length = 434

 Score =  214 bits (544), Expect(2) = 9e-66
 Identities = 127/235 (54%), Positives = 149/235 (63%), Gaps = 42/235 (17%)
 Frame = -3

Query: 1007 AAARNKHNRDDPNLDFQGLINNLQDWXXXXXXXXXXXXXXK-------HVGTSSLQTSYQ 849
            A    KH RD   LDFQG +N+LQDW              +         G S  +TS  
Sbjct: 2    ARVPGKHGRDQA-LDFQGFLNDLQDWELLKDTDKKMKKKSRASDVKIGEDGRSKGKTSAA 60

Query: 848  D------------------------LLTQETSPTAATEKDLGNEWFKQKKYNEAIDCYSR 741
            D                          T E +  A TEK+LGNE+FKQKK+NEAI+CYSR
Sbjct: 61   DSSRSGSGQYEYSRNFGAINRLSSSFTTDEITVDATTEKELGNEYFKQKKFNEAIECYSR 120

Query: 740  SIALSPTAVSFANRAMAYLKIKR----FEEAENDCTEALNLDDRYTKAYSRRATARKELG 573
            SIALSPTAV++ANRAMAYLKIKR    F EAE+DCTEALNLDDRY KAYSRRATARKELG
Sbjct: 121  SIALSPTAVAYANRAMAYLKIKRQFFLFREAEDDCTEALNLDDRYIKAYSRRATARKELG 180

Query: 572  KLKASLEDSEFALRLEPQNQELKKQHAEAKVMYDK-------ELLKKASETMKSS 429
            KLK S+EDSEFAL+LEP NQE+KKQ+AE K +Y+K       E+L+KAS T++SS
Sbjct: 181  KLKESIEDSEFALKLEPNNQEIKKQYAEVKSLYEKASDYLMLEILQKASGTLRSS 235



 Score = 63.9 bits (154), Expect(2) = 9e-66
 Identities = 44/117 (37%), Positives = 61/117 (52%), Gaps = 1/117 (0%)
 Frame = -1

Query: 349 TMKSSTQGAQRVIGNENRIKEVVGRS-ANAGNRSLREDSNGSQEGATLKPIADASKNVHG 173
           T++SS QG Q+            GRS A+    ++   S  +Q+        D +K  + 
Sbjct: 231 TLRSSLQGTQQG-----------GRSEASVNGHAVHPVSIATQKTGVSASKKDNTKKNNR 279

Query: 172 MKKQEVRMSVQELXXXXXXXXXXXAGKSITSPKSAYQFEISWRGVSGDVALQARLLK 2
            ++QE++ SV EL           A K+IT P SAYQFE+SW+G SGD ALQA LLK
Sbjct: 280 TRRQELKTSVIELASQAASRAMAEAAKNITPPNSAYQFEVSWQGFSGDRALQAHLLK 336


>ref|XP_002318949.1| predicted protein [Populus trichocarpa] gi|222857325|gb|EEE94872.1|
            predicted protein [Populus trichocarpa]
          Length = 471

 Score =  204 bits (518), Expect(2) = 1e-64
 Identities = 121/228 (53%), Positives = 142/228 (62%), Gaps = 35/228 (15%)
 Frame = -3

Query: 1007 AAARNKHNRDDPNLDFQGLINNLQDWXXXXXXXXXXXXXXKH----VGTSSLQTSYQ--- 849
            A A  KH RD   LDFQG +N+LQDW                    V  SS    Y    
Sbjct: 2    ARAPGKHGRDQA-LDFQGFLNDLQDWELLKDTDKKMKKKSTGKTSAVDFSSSSGMYDHAR 60

Query: 848  ----------DLLTQETSPTAATEKDLGNEWFKQKKYNEAIDCYSRSIALSPTAVSFANR 699
                           E++  A TEK+LGNE+FKQKKY EAI+CYSRSIALSPTAV++ANR
Sbjct: 61   NFDAINRLSNSFAIDESTVDATTEKELGNEYFKQKKYKEAIECYSRSIALSPTAVAYANR 120

Query: 698  AMAYLKIKRFEEAENDCTEALNLDDRYTKAYSRRATARKELGKLKASLEDSEFALRLEPQ 519
            AMAYLKIKR  +AE+DCTEALNLDDRY KAYSRRAT RKELGKLK S+EDSEFAL+LEP 
Sbjct: 121  AMAYLKIKR--QAEDDCTEALNLDDRYIKAYSRRATTRKELGKLKESIEDSEFALKLEPN 178

Query: 518  NQELKKQHAEAKVMYDKE------------------LLKKASETMKSS 429
            NQE+KKQ+AE K +Y+K                    + KASE+++SS
Sbjct: 179  NQEIKKQYAEVKSLYEKASDSTICCYSGCYISLLQFFVTKASESLRSS 226



 Score = 70.1 bits (170), Expect(2) = 1e-64
 Identities = 44/114 (38%), Positives = 64/114 (56%)
 Frame = -1

Query: 343 KSSTQGAQRVIGNENRIKEVVGRSANAGNRSLREDSNGSQEGATLKPIADASKNVHGMKK 164
           K+       V+     ++E+  +S  AG+RS  +  N S+  A   P ++A +++    +
Sbjct: 264 KAKENDGDGVVKKSVYVEEIKNKSTGAGSRSDGQLGNDSRANAI--PSSNA-ESIQVTGR 320

Query: 163 QEVRMSVQELXXXXXXXXXXXAGKSITSPKSAYQFEISWRGVSGDVALQARLLK 2
           QE++ SV+EL           A K+IT P SAYQFE+SWRG SGD ALQA LLK
Sbjct: 321 QELKASVKELASQAASRAMAEAAKNITPPNSAYQFEVSWRGFSGDRALQAHLLK 374


>ref|XP_004144746.1| PREDICTED: RNA polymerase II-associated protein 3-like [Cucumis
           sativus] gi|449517788|ref|XP_004165926.1| PREDICTED: RNA
           polymerase II-associated protein 3-like [Cucumis
           sativus]
          Length = 458

 Score =  209 bits (532), Expect(2) = 1e-64
 Identities = 116/211 (54%), Positives = 140/211 (66%), Gaps = 22/211 (10%)
 Frame = -3

Query: 992 KHNRDDPNLDFQGLINNLQDWXXXXXXXXXXXXXXK----------------------HV 879
           KH RD   LDFQG +N+LQDW                                     + 
Sbjct: 7   KHGRDQL-LDFQGFLNDLQDWEVSFKGKDKKLKPQAIGKEKEDRRQTEKASAADYMKQYD 65

Query: 878 GTSSLQTSYQDLLTQETSPTAATEKDLGNEWFKQKKYNEAIDCYSRSIALSPTAVSFANR 699
             + L  ++Q   T+ +   AA+EK+ GNE+FKQKK+ EAIDCYSRSIALSPTAV+FANR
Sbjct: 66  AVNRLSRNFQ---TEGSFVDAASEKEQGNEYFKQKKFKEAIDCYSRSIALSPTAVAFANR 122

Query: 698 AMAYLKIKRFEEAENDCTEALNLDDRYTKAYSRRATARKELGKLKASLEDSEFALRLEPQ 519
           AMAYLKI+RF+EAE+DCTEALNLDDRY KAYSRRATARKELGK K +LED+EFA RLEP 
Sbjct: 123 AMAYLKIRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKAKEALEDAEFAQRLEPN 182

Query: 518 NQELKKQHAEAKVMYDKELLKKASETMKSST 426
           NQE+KKQHA+ +    K +L+KAS   +SST
Sbjct: 183 NQEIKKQHADLRAFVGKAILEKASGASRSST 213



 Score = 64.7 bits (156), Expect(2) = 1e-64
 Identities = 41/109 (37%), Positives = 58/109 (53%)
 Frame = -1

Query: 328 GAQRVIGNENRIKEVVGRSANAGNRSLREDSNGSQEGATLKPIADASKNVHGMKKQEVRM 149
           G    +    R++E    S+ A   S +  +NG  + ++      A +  H  +KQE++ 
Sbjct: 254 GGGNAVKTSARLEESEDTSSGAEITSKKVATNGFHKDSS--SYLSALERDHLPRKQELKA 311

Query: 148 SVQELXXXXXXXXXXXAGKSITSPKSAYQFEISWRGVSGDVALQARLLK 2
           SV EL           A K+I +P +AYQFE+SWRG SGD ALQARLLK
Sbjct: 312 SVYELASQAASRSMVEAAKNIIAPTTAYQFEVSWRGFSGDQALQARLLK 360


>ref|XP_002277910.2| PREDICTED: RNA polymerase II-associated protein 3-like [Vitis
           vinifera]
          Length = 474

 Score =  216 bits (550), Expect = 7e-54
 Identities = 107/152 (70%), Positives = 131/152 (86%)
 Frame = -3

Query: 884 HVGTSSLQTSYQDLLTQETSPTAATEKDLGNEWFKQKKYNEAIDCYSRSIALSPTAVSFA 705
           H   S + +S+   +T+E+ P AA+EK+LGNE+FKQ+K+ EAIDCYSRSIAL PTAV++A
Sbjct: 86  HDAISRISSSF---MTEESLPDAASEKELGNEYFKQRKFKEAIDCYSRSIALLPTAVAYA 142

Query: 704 NRAMAYLKIKRFEEAENDCTEALNLDDRYTKAYSRRATARKELGKLKASLEDSEFALRLE 525
           NRAMAY+KIKRF EAE+DC EALNLDDRY KAYSRRATARKELGK K + ED+EFALRLE
Sbjct: 143 NRAMAYIKIKRFREAEDDCMEALNLDDRYIKAYSRRATARKELGKFKEATEDAEFALRLE 202

Query: 524 PQNQELKKQHAEAKVMYDKELLKKASETMKSS 429
           PQNQE+KKQ+AEAK +Y+KE+L+KAS  +KSS
Sbjct: 203 PQNQEIKKQYAEAKSLYEKEILQKASGALKSS 234



 Score = 60.1 bits (144), Expect = 9e-07
 Identities = 37/87 (42%), Positives = 48/87 (55%)
 Frame = -1

Query: 262 GNRSLREDSNGSQEGATLKPIADASKNVHGMKKQEVRMSVQELXXXXXXXXXXXAGKSIT 83
           GNRS     NG  E A      +   + H   ++E++ S+QEL           A K+IT
Sbjct: 293 GNRS---KENGYLENAVQNSGLEDVMSNHKTGQREMKSSLQELASRAASRAMVEAAKNIT 349

Query: 82  SPKSAYQFEISWRGVSGDVALQARLLK 2
           +P SAYQFE+SWRG+ GD ALQA  LK
Sbjct: 350 APNSAYQFEVSWRGLLGDHALQASYLK 376


>emb|CBI39598.3| unnamed protein product [Vitis vinifera]
          Length = 1097

 Score =  216 bits (550), Expect = 7e-54
 Identities = 107/152 (70%), Positives = 131/152 (86%)
 Frame = -3

Query: 884  HVGTSSLQTSYQDLLTQETSPTAATEKDLGNEWFKQKKYNEAIDCYSRSIALSPTAVSFA 705
            H   S + +S+   +T+E+ P AA+EK+LGNE+FKQ+K+ EAIDCYSRSIAL PTAV++A
Sbjct: 709  HDAISRISSSF---MTEESLPDAASEKELGNEYFKQRKFKEAIDCYSRSIALLPTAVAYA 765

Query: 704  NRAMAYLKIKRFEEAENDCTEALNLDDRYTKAYSRRATARKELGKLKASLEDSEFALRLE 525
            NRAMAY+KIKRF EAE+DC EALNLDDRY KAYSRRATARKELGK K + ED+EFALRLE
Sbjct: 766  NRAMAYIKIKRFREAEDDCMEALNLDDRYIKAYSRRATARKELGKFKEATEDAEFALRLE 825

Query: 524  PQNQELKKQHAEAKVMYDKELLKKASETMKSS 429
            PQNQE+KKQ+AEAK +Y+KE+L+KAS  +KSS
Sbjct: 826  PQNQEIKKQYAEAKSLYEKEILQKASGALKSS 857



 Score = 60.1 bits (144), Expect = 9e-07
 Identities = 37/87 (42%), Positives = 48/87 (55%)
 Frame = -1

Query: 262  GNRSLREDSNGSQEGATLKPIADASKNVHGMKKQEVRMSVQELXXXXXXXXXXXAGKSIT 83
            GNRS     NG  E A      +   + H   ++E++ S+QEL           A K+IT
Sbjct: 916  GNRS---KENGYLENAVQNSGLEDVMSNHKTGQREMKSSLQELASRAASRAMVEAAKNIT 972

Query: 82   SPKSAYQFEISWRGVSGDVALQARLLK 2
            +P SAYQFE+SWRG+ GD ALQA  LK
Sbjct: 973  APNSAYQFEVSWRGLLGDHALQASYLK 999