BLASTX nr result
ID: Coptis21_contig00013891
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis21_contig00013891
(1010 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAN72416.1| hypothetical protein VITISV_027905 [Vitis vinifera] 322 1e-85
ref|XP_002320901.1| predicted protein [Populus trichocarpa] gi|2... 321 2e-85
ref|XP_003626608.1| Pentatricopeptide repeat-containing protein ... 315 1e-83
ref|XP_002515077.1| pentatricopeptide repeat-containing protein,... 300 3e-79
ref|XP_004138384.1| PREDICTED: pentatricopeptide repeat-containi... 295 2e-77
>emb|CAN72416.1| hypothetical protein VITISV_027905 [Vitis vinifera]
Length = 422
Score = 322 bits (824), Expect = 1e-85
Identities = 154/215 (71%), Positives = 175/215 (81%)
Frame = -2
Query: 1009 VSLLEDMLNKGYVPDTLSYTTLLNSLCRKKKLREAYKLLCRMKVKGCNPDIVHYNTVILG 830
V LLEDMLNKGYVPD LSYTTLLNSLCRKKKL+EAYKLLCRMKVKGCNPDIVHYNTVILG
Sbjct: 208 VDLLEDMLNKGYVPDALSYTTLLNSLCRKKKLKEAYKLLCRMKVKGCNPDIVHYNTVILG 267
Query: 829 FCRERRASDAIKVIEDMPENGCIPNLVSYRTLVNGLCSQGMLDEAKAYLEEMISKGFVPH 650
FCRE R DA KV+EDMP NGC PNL+SY TLV+GLC QG+ DEAK Y+EEM+SKGF PH
Sbjct: 268 FCREGRXLDACKVLEDMPSNGCSPNLMSYGTLVSGLCDQGLYDEAKNYVEEMLSKGFSPH 327
Query: 649 FSAFHGLVKGFCNVGRMEEACFVLEEMLRHGEVPHTETWVTIVQRICCEGESMEMERILQ 470
FS FH L+ GFCNVG++EEAC VL EMLRHGE HTETWV I+ RIC + + ME I
Sbjct: 328 FSVFHALINGFCNVGKLEEACEVLXEMLRHGEAXHTETWVAIIPRICEVDKLVRMENIFD 387
Query: 469 NVLKIEIARDAKIVDLGQGLAEFLIRKVQAKSWKA 365
LK+EI + ++V+ G GL E++IRKV+ KS KA
Sbjct: 388 EXLKLEITPNTRLVEAGIGLEEYVIRKVRDKSRKA 422
Score = 108 bits (271), Expect = 2e-21
Identities = 59/173 (34%), Positives = 95/173 (54%)
Frame = -2
Query: 979 GYVPDTLSYTTLLNSLCRKKKLREAYKLLCRMKVKGCNPDIVHYNTVILGFCRERRASDA 800
G PDT SY L+++ C L AY L +M + PD+ Y ++ G CR+ + + A
Sbjct: 148 GVSPDTKSYNILMSAFCFNGDLSIAYTLFNQMFKRDVAPDVESYRILMQGLCRKSQVNRA 207
Query: 799 IKVIEDMPENGCIPNLVSYRTLVNGLCSQGMLDEAKAYLEEMISKGFVPHFSAFHGLVKG 620
+ ++EDM G +P+ +SY TL+N LC + L EA L M KG P ++ ++ G
Sbjct: 208 VDLLEDMLNKGYVPDALSYTTLLNSLCRKKKLKEAYKLLCRMKVKGCNPDIVHYNTVILG 267
Query: 619 FCNVGRMEEACFVLEEMLRHGEVPHTETWVTIVQRICCEGESMEMERILQNVL 461
FC GR +AC VLE+M +G P+ ++ T+V +C +G E + ++ +L
Sbjct: 268 FCREGRXLDACKVLEDMPSNGCSPNLMSYGTLVSGLCDQGLYDEAKNYVEEML 320
Score = 74.3 bits (181), Expect = 4e-11
Identities = 42/151 (27%), Positives = 76/151 (50%)
Frame = -2
Query: 916 LREAYKLLCRMKVKGCNPDIVHYNTVILGFCRERRASDAIKVIEDMPENGCIPNLVSYRT 737
+R A+ L G +PD YN ++ FC S A + M + P++ SYR
Sbjct: 134 IRPAFDLFKSAHRYGVSPDTKSYNILMSAFCFNGDLSIAYTLFNQMFKRDVAPDVESYRI 193
Query: 736 LVNGLCSQGMLDEAKAYLEEMISKGFVPHFSAFHGLVKGFCNVGRMEEACFVLEEMLRHG 557
L+ GLC + ++ A LE+M++KG+VP ++ L+ C +++EA +L M G
Sbjct: 194 LMQGLCRKSQVNRAVDLLEDMLNKGYVPDALSYTTLLNSLCRKKKLKEAYKLLCRMKVKG 253
Query: 556 EVPHTETWVTIVQRICCEGESMEMERILQNV 464
P + T++ C EG ++ ++L+++
Sbjct: 254 CNPDIVHYNTVILGFCREGRXLDACKVLEDM 284
>ref|XP_002320901.1| predicted protein [Populus trichocarpa] gi|222861674|gb|EEE99216.1|
predicted protein [Populus trichocarpa]
Length = 475
Score = 321 bits (823), Expect = 2e-85
Identities = 150/214 (70%), Positives = 176/214 (82%)
Frame = -2
Query: 1009 VSLLEDMLNKGYVPDTLSYTTLLNSLCRKKKLREAYKLLCRMKVKGCNPDIVHYNTVILG 830
V LLEDMLNKGYVPD LSYTTLLNSLCRKKKLREAYKLLCRMKVKGCNPDI+HYNTVILG
Sbjct: 261 VDLLEDMLNKGYVPDALSYTTLLNSLCRKKKLREAYKLLCRMKVKGCNPDIIHYNTVILG 320
Query: 829 FCRERRASDAIKVIEDMPENGCIPNLVSYRTLVNGLCSQGMLDEAKAYLEEMISKGFVPH 650
FCRE RA DA KV+EDM NGC+PNLVSYRTLV GLC QGM DEAK++LEEM+ KGF PH
Sbjct: 321 FCREGRAMDACKVLEDMESNGCMPNLVSYRTLVGGLCDQGMFDEAKSHLEEMMMKGFSPH 380
Query: 649 FSAFHGLVKGFCNVGRMEEACFVLEEMLRHGEVPHTETWVTIVQRICCEGESMEMERILQ 470
F+ + L+KGFCNVG++EEAC V+EE+L+HGE PHTETWV +V RIC + + IL
Sbjct: 381 FAVSNALIKGFCNVGKIEEACGVVEELLKHGEAPHTETWVMMVSRICEVDDLQRIGEILD 440
Query: 469 NVLKIEIARDAKIVDLGQGLAEFLIRKVQAKSWK 368
V K+E+ D +IV+ G GL E+LI++ Q K+W+
Sbjct: 441 KVKKVELKGDTRIVEAGIGLEEYLIKRTQQKAWR 474
Score = 105 bits (262), Expect = 2e-20
Identities = 57/181 (31%), Positives = 97/181 (53%)
Frame = -2
Query: 1003 LLEDMLNKGYVPDTLSYTTLLNSLCRKKKLREAYKLLCRMKVKGCNPDIVHYNTVILGFC 824
L +D P+T SY L+ + C ++ AY L +M + PD+ Y ++ C
Sbjct: 193 LFKDAHTYDVFPNTKSYNILIRAFCLNGQISMAYSLFNQMFKRDVMPDVESYRILMQALC 252
Query: 823 RERRASDAIKVIEDMPENGCIPNLVSYRTLVNGLCSQGMLDEAKAYLEEMISKGFVPHFS 644
R+ + + A+ ++EDM G +P+ +SY TL+N LC + L EA L M KG P
Sbjct: 253 RKSQVNGAVDLLEDMLNKGYVPDALSYTTLLNSLCRKKKLREAYKLLCRMKVKGCNPDII 312
Query: 643 AFHGLVKGFCNVGRMEEACFVLEEMLRHGEVPHTETWVTIVQRICCEGESMEMERILQNV 464
++ ++ GFC GR +AC VLE+M +G +P+ ++ T+V +C +G E + L+ +
Sbjct: 313 HYNTVILGFCREGRAMDACKVLEDMESNGCMPNLVSYRTLVGGLCDQGMFDEAKSHLEEM 372
Query: 463 L 461
+
Sbjct: 373 M 373
Score = 66.2 bits (160), Expect = 1e-08
Identities = 49/216 (22%), Positives = 89/216 (41%), Gaps = 36/216 (16%)
Frame = -2
Query: 1003 LLEDMLNKGYVPDTLSYTTLLNSLCRKKKLREAYKLLCRMKVKGCNPDIVH--------- 851
LL D+ +K Y ++ ++N +A K+ + CNP H
Sbjct: 122 LLTDLKSKNYPVTPTLFSYIINIYGEANLPDKALKIFYTILKFDCNPSPKHLNGILEILV 181
Query: 850 ---------------------------YNTVILGFCRERRASDAIKVIEDMPENGCIPNL 752
YN +I FC + S A + M + +P++
Sbjct: 182 SHQNYIKPAFDLFKDAHTYDVFPNTKSYNILIRAFCLNGQISMAYSLFNQMFKRDVMPDV 241
Query: 751 VSYRTLVNGLCSQGMLDEAKAYLEEMISKGFVPHFSAFHGLVKGFCNVGRMEEACFVLEE 572
SYR L+ LC + ++ A LE+M++KG+VP ++ L+ C ++ EA +L
Sbjct: 242 ESYRILMQALCRKSQVNGAVDLLEDMLNKGYVPDALSYTTLLNSLCRKKKLREAYKLLCR 301
Query: 571 MLRHGEVPHTETWVTIVQRICCEGESMEMERILQNV 464
M G P + T++ C EG +M+ ++L+++
Sbjct: 302 MKVKGCNPDIIHYNTVILGFCREGRAMDACKVLEDM 337
>ref|XP_003626608.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|87240852|gb|ABD32710.1| Tetratricopeptide-like helical
[Medicago truncatula] gi|355501623|gb|AES82826.1|
Pentatricopeptide repeat-containing protein [Medicago
truncatula]
Length = 451
Score = 315 bits (807), Expect = 1e-83
Identities = 150/212 (70%), Positives = 175/212 (82%)
Frame = -2
Query: 1009 VSLLEDMLNKGYVPDTLSYTTLLNSLCRKKKLREAYKLLCRMKVKGCNPDIVHYNTVILG 830
V L EDMLNKG+VPD+ +YTTLLNSLCRKKKLREAYKLLCRMKVKGCNPDIVHYNTVILG
Sbjct: 237 VDLFEDMLNKGFVPDSFTYTTLLNSLCRKKKLREAYKLLCRMKVKGCNPDIVHYNTVILG 296
Query: 829 FCRERRASDAIKVIEDMPENGCIPNLVSYRTLVNGLCSQGMLDEAKAYLEEMISKGFVPH 650
FCRE RA DA KVI+DM NGC+PNLVSYRTLVNGLC GMLDEA Y+EEM+SKGF PH
Sbjct: 297 FCREGRAHDACKVIDDMQANGCLPNLVSYRTLVNGLCHLGMLDEATKYVEEMLSKGFSPH 356
Query: 649 FSAFHGLVKGFCNVGRMEEACFVLEEMLRHGEVPHTETWVTIVQRICCEGESMEMERILQ 470
F+ H LVKGFCNVGR+EEAC VL + L H E PH +TW+ IV +IC + ++++ +L+
Sbjct: 357 FAVIHALVKGFCNVGRIEEACGVLTKSLEHREAPHKDTWMIIVPQICEVDDGVKIDGVLE 416
Query: 469 NVLKIEIARDAKIVDLGQGLAEFLIRKVQAKS 374
VLKIEI D +IVD G GL ++LIRK++AKS
Sbjct: 417 EVLKIEIKGDTRIVDAGIGLEDYLIRKIRAKS 448
Score = 105 bits (261), Expect = 2e-20
Identities = 57/181 (31%), Positives = 94/181 (51%)
Frame = -2
Query: 1003 LLEDMLNKGYVPDTLSYTTLLNSLCRKKKLREAYKLLCRMKVKGCNPDIVHYNTVILGFC 824
L +D G PDT SY L+ + C + AY L +M + PDI Y ++ C
Sbjct: 169 LFKDAHKHGVFPDTKSYNILMRAFCLNGDISIAYTLFNKMFKRDVVPDIQSYRILMQALC 228
Query: 823 RERRASDAIKVIEDMPENGCIPNLVSYRTLVNGLCSQGMLDEAKAYLEEMISKGFVPHFS 644
R+ + + A+ + EDM G +P+ +Y TL+N LC + L EA L M KG P
Sbjct: 229 RKSQVNGAVDLFEDMLNKGFVPDSFTYTTLLNSLCRKKKLREAYKLLCRMKVKGCNPDIV 288
Query: 643 AFHGLVKGFCNVGRMEEACFVLEEMLRHGEVPHTETWVTIVQRICCEGESMEMERILQNV 464
++ ++ GFC GR +AC V+++M +G +P+ ++ T+V +C G E + ++ +
Sbjct: 289 HYNTVILGFCREGRAHDACKVIDDMQANGCLPNLVSYRTLVNGLCHLGMLDEATKYVEEM 348
Query: 463 L 461
L
Sbjct: 349 L 349
Score = 70.1 bits (170), Expect = 8e-10
Identities = 47/177 (26%), Positives = 80/177 (45%), Gaps = 1/177 (0%)
Frame = -2
Query: 991 MLNKGYVPDTLSYTTLLNSLCRKKK-LREAYKLLCRMKVKGCNPDIVHYNTVILGFCRER 815
ML P T +L+ L + LR A+ L G PD YN ++ FC
Sbjct: 137 MLQFNIKPLTKHLNRILDILVSHRNYLRPAFDLFKDAHKHGVFPDTKSYNILMRAFCLNG 196
Query: 814 RASDAIKVIEDMPENGCIPNLVSYRTLVNGLCSQGMLDEAKAYLEEMISKGFVPHFSAFH 635
S A + M + +P++ SYR L+ LC + ++ A E+M++KGFVP +
Sbjct: 197 DISIAYTLFNKMFKRDVVPDIQSYRILMQALCRKSQVNGAVDLFEDMLNKGFVPDSFTYT 256
Query: 634 GLVKGFCNVGRMEEACFVLEEMLRHGEVPHTETWVTIVQRICCEGESMEMERILQNV 464
L+ C ++ EA +L M G P + T++ C EG + + +++ ++
Sbjct: 257 TLLNSLCRKKKLREAYKLLCRMKVKGCNPDIVHYNTVILGFCREGRAHDACKVIDDM 313
>ref|XP_002515077.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223545557|gb|EEF47061.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 262
Score = 300 bits (769), Expect = 3e-79
Identities = 145/215 (67%), Positives = 171/215 (79%)
Frame = -2
Query: 1009 VSLLEDMLNKGYVPDTLSYTTLLNSLCRKKKLREAYKLLCRMKVKGCNPDIVHYNTVILG 830
V LLEDMLNKG+VPD L+YTTLLNSLCRKKKLREAYKLLCRMKVKGCNPDIVHYNT+I G
Sbjct: 49 VGLLEDMLNKGFVPDCLTYTTLLNSLCRKKKLREAYKLLCRMKVKGCNPDIVHYNTIISG 108
Query: 829 FCRERRASDAIKVIEDMPENGCIPNLVSYRTLVNGLCSQGMLDEAKAYLEEMISKGFVPH 650
FCRE RA DA KV+ DM NGC+PNLVSYRTLV G+C QGM DEAK+YLEEMI KGF PH
Sbjct: 109 FCREGRAMDARKVLGDMECNGCLPNLVSYRTLVAGICDQGMFDEAKSYLEEMILKGFSPH 168
Query: 649 FSAFHGLVKGFCNVGRMEEACFVLEEMLRHGEVPHTETWVTIVQRICCEGESMEMERILQ 470
FS H LVKGFC VG++EEAC V+E +L+HGEVPH +TW+ I+ RIC + + + L
Sbjct: 169 FSVSHALVKGFCIVGKIEEACGVVEVLLKHGEVPHADTWIIILPRICEVDDLEGIRQSLD 228
Query: 469 NVLKIEIARDAKIVDLGQGLAEFLIRKVQAKSWKA 365
+ +EI D +IV+ G GL ++LI+K Q K W+A
Sbjct: 229 KAMMVEIMGDTRIVEAGIGLEDYLIKKAQPK-WRA 262
>ref|XP_004138384.1| PREDICTED: pentatricopeptide repeat-containing protein At4g01400,
mitochondrial-like [Cucumis sativus]
gi|449499186|ref|XP_004160743.1| PREDICTED:
pentatricopeptide repeat-containing protein At4g01400,
mitochondrial-like [Cucumis sativus]
Length = 482
Score = 295 bits (754), Expect = 2e-77
Identities = 136/210 (64%), Positives = 166/210 (79%)
Frame = -2
Query: 1009 VSLLEDMLNKGYVPDTLSYTTLLNSLCRKKKLREAYKLLCRMKVKGCNPDIVHYNTVILG 830
V LLEDMLNKGY+PDTLSY TLLNSLCRKKKLREAYKLLCRMKVKGCNPDI HYNTVI+G
Sbjct: 267 VDLLEDMLNKGYIPDTLSYATLLNSLCRKKKLREAYKLLCRMKVKGCNPDIAHYNTVIMG 326
Query: 829 FCRERRASDAIKVIEDMPENGCIPNLVSYRTLVNGLCSQGMLDEAKAYLEEMISKGFVPH 650
FCRE RA DA K++EDM NGC+PNLVSY +L NGLC QGM + AK Y+EEM KGF PH
Sbjct: 327 FCREGRALDACKILEDMQSNGCLPNLVSYESLTNGLCDQGMFELAKGYVEEMTLKGFYPH 386
Query: 649 FSAFHGLVKGFCNVGRMEEACFVLEEMLRHGEVPHTETWVTIVQRICCEGESMEMERILQ 470
FS H LVKGF ++GR+ E+C VLE+ML+ G+ PH++TW I+ IC ++ + + +
Sbjct: 387 FSVIHALVKGFHSIGRIHESCSVLEDMLKRGKAPHSDTWEIIISGICEVEDTAKFCEVWE 446
Query: 469 NVLKIEIARDAKIVDLGQGLAEFLIRKVQA 380
+LK ++ RD +IV+ G GL E+LIRK+QA
Sbjct: 447 KILKKDVRRDTRIVEAGTGLGEYLIRKLQA 476
Score = 110 bits (274), Expect = 7e-22
Identities = 55/168 (32%), Positives = 95/168 (56%)
Frame = -2
Query: 1003 LLEDMLNKGYVPDTLSYTTLLNSLCRKKKLREAYKLLCRMKVKGCNPDIVHYNTVILGFC 824
L ++ + G +P+T SY L+ + C + AY L +M + PD+ Y T++ G C
Sbjct: 199 LFKNARHHGVLPNTKSYNILIRAFCWNGNISIAYTLFNKMFERNVIPDVETYRTLMQGLC 258
Query: 823 RERRASDAIKVIEDMPENGCIPNLVSYRTLVNGLCSQGMLDEAKAYLEEMISKGFVPHFS 644
R+ + + A+ ++EDM G IP+ +SY TL+N LC + L EA L M KG P +
Sbjct: 259 RKNQVNGAVDLLEDMLNKGYIPDTLSYATLLNSLCRKKKLREAYKLLCRMKVKGCNPDIA 318
Query: 643 AFHGLVKGFCNVGRMEEACFVLEEMLRHGEVPHTETWVTIVQRICCEG 500
++ ++ GFC GR +AC +LE+M +G +P+ ++ ++ +C +G
Sbjct: 319 HYNTVIMGFCREGRALDACKILEDMQSNGCLPNLVSYESLTNGLCDQG 366
Score = 83.2 bits (204), Expect = 9e-14
Identities = 49/177 (27%), Positives = 88/177 (49%), Gaps = 1/177 (0%)
Frame = -2
Query: 991 MLNKGYVPDTLSYTTLLNSLCRKKK-LREAYKLLCRMKVKGCNPDIVHYNTVILGFCRER 815
M++ G P + +L L + +R A+ L + G P+ YN +I FC
Sbjct: 167 MIDFGCTPSSKQLNRILEILVSHRNFIRPAFDLFKNARHHGVLPNTKSYNILIRAFCWNG 226
Query: 814 RASDAIKVIEDMPENGCIPNLVSYRTLVNGLCSQGMLDEAKAYLEEMISKGFVPHFSAFH 635
S A + M E IP++ +YRTL+ GLC + ++ A LE+M++KG++P ++
Sbjct: 227 NISIAYTLFNKMFERNVIPDVETYRTLMQGLCRKNQVNGAVDLLEDMLNKGYIPDTLSYA 286
Query: 634 GLVKGFCNVGRMEEACFVLEEMLRHGEVPHTETWVTIVQRICCEGESMEMERILQNV 464
L+ C ++ EA +L M G P + T++ C EG +++ +IL+++
Sbjct: 287 TLLNSLCRKKKLREAYKLLCRMKVKGCNPDIAHYNTVIMGFCREGRALDACKILEDM 343