BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00013857
         (773 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002281971.1| PREDICTED: DNA-directed RNA polymerase III s...   231   1e-58
ref|XP_002271507.2| PREDICTED: DNA-directed RNA polymerase III s...   230   3e-58
ref|XP_002520987.1| DNA-directed RNA polymerase III 25 kD polype...   204   2e-50
dbj|BAK08181.1| predicted protein [Hordeum vulgare subsp. vulgare]    201   2e-49
ref|NP_001241897.1| uncharacterized protein LOC100800770 [Glycin...   199   6e-49

>ref|XP_002281971.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC8 [Vitis
           vinifera] gi|297735498|emb|CBI17938.3| unnamed protein
           product [Vitis vinifera]
          Length = 192

 Score =  231 bits (590), Expect = 1e-58
 Identities = 111/187 (59%), Positives = 134/187 (71%), Gaps = 6/187 (3%)
 Frame = +2

Query: 2   LIEHTXXXXXXXXXXXXDQAIKGELETLFLDKVIANLGLCVSVYDIRNIDGGFIFPGDGA 181
           LIEHT            ++AIKGELE+LFLDKVIANLGLC+SVYDIR+IDGGF+FPGDGA
Sbjct: 6   LIEHTLRLPPHLLDLPLNEAIKGELESLFLDKVIANLGLCISVYDIRSIDGGFVFPGDGA 65

Query: 182 STFTVNFRLIVFRPFXXXXXXXXXXXXDAKGLRLSLGFFKDITLPAHLLPNPSKFGEDGK 361
           ST+TV FRL++FRPF            DA GLRLSLGFF DI +P HL+PNP     + +
Sbjct: 66  STYTVEFRLVMFRPFVGEIITAKLKESDANGLRLSLGFFDDIYIPVHLMPNPCHCEPNPE 125

Query: 362 ------WTWDFNGTELPIEKEDEIRFKVHSIRYPPIPVEQEKDAKPFAPMVITASIDFDG 523
                 W WD+   + PI+  DEIRF+V S+ YPPIPVEQ K++KPFAPMVI  S+D+DG
Sbjct: 126 KKGQVIWIWDYQEQKFPIDGIDEIRFQVQSVSYPPIPVEQPKESKPFAPMVIMGSLDYDG 185

Query: 524 LGPISWW 544
           LGP+SWW
Sbjct: 186 LGPVSWW 192


>ref|XP_002271507.2| PREDICTED: DNA-directed RNA polymerase III subunit RPC8-like [Vitis
           vinifera] gi|296086693|emb|CBI32328.3| unnamed protein
           product [Vitis vinifera]
          Length = 192

 Score =  230 bits (586), Expect = 3e-58
 Identities = 109/187 (58%), Positives = 134/187 (71%), Gaps = 6/187 (3%)
 Frame = +2

Query: 2   LIEHTXXXXXXXXXXXXDQAIKGELETLFLDKVIANLGLCVSVYDIRNIDGGFIFPGDGA 181
           LIEHT            ++AIKGELE+LFLDKV+ANLGLC+SVYDIR+IDGGF+FPGDGA
Sbjct: 6   LIEHTLRLPPHLLDLPLNEAIKGELESLFLDKVLANLGLCISVYDIRSIDGGFVFPGDGA 65

Query: 182 STFTVNFRLIVFRPFXXXXXXXXXXXXDAKGLRLSLGFFKDITLPAHLLPNPSKFGEDGK 361
           ST+TV FRL++FRPF            DA GL+LSLGFF DI +P HL+PNP     D +
Sbjct: 66  STYTVEFRLVMFRPFVGEIITAKLKESDANGLQLSLGFFDDIYIPVHLMPNPCHCEPDPE 125

Query: 362 ------WTWDFNGTELPIEKEDEIRFKVHSIRYPPIPVEQEKDAKPFAPMVITASIDFDG 523
                 W WD+   + PI+  DEIRF+V S+ YPPIPVEQ K++KPFAPM+I  S+D+DG
Sbjct: 126 NKSQVIWIWDYQEQKFPIDGLDEIRFQVQSVSYPPIPVEQPKESKPFAPMMIMGSLDYDG 185

Query: 524 LGPISWW 544
           LGP+SWW
Sbjct: 186 LGPVSWW 192


>ref|XP_002520987.1| DNA-directed RNA polymerase III 25 kD polypeptide, putative
           [Ricinus communis] gi|223539824|gb|EEF41404.1|
           DNA-directed RNA polymerase III 25 kD polypeptide,
           putative [Ricinus communis]
          Length = 194

 Score =  204 bits (518), Expect = 2e-50
 Identities = 103/190 (54%), Positives = 128/190 (67%), Gaps = 10/190 (5%)
 Frame = +2

Query: 5   IEHTXXXXXXXXXXXXDQAIKGELETLFLDKVIANLGLCVSVYDIRNIDGGFIFPGDGAS 184
           IEHT              A+K ELE +FLDKVIANLGLC+SVYD+ +IDGGFIFPGDGAS
Sbjct: 7   IEHTLRLPPSLLSLPLQDAVKKELEIIFLDKVIANLGLCISVYDVTHIDGGFIFPGDGAS 66

Query: 185 TFTVNFRLIVFRPFXXXXXXXXXXXXDAKGLRLSLGFFKDITLPAHLLPNPSKFGEDGK- 361
           T+TV FR++VFRPF            +  GLRLSLGFF DI +P+H LP PS   +D + 
Sbjct: 67  TYTVRFRIVVFRPFVGEIIVAKLKESNNDGLRLSLGFFDDIYIPSHRLPKPSYSQQDPEN 126

Query: 362 -----WTWDF----NGTELPIEKEDEIRFKVHSIRYPPIPVEQEKDAKPFAPMVITASID 514
                W W+F    N  E  I+  DEI+F+V S++YPP+P+EQ++  KPFAPMVIT SID
Sbjct: 127 RYQAIWIWEFVSEDNKMEFNIDGLDEIKFRVDSVKYPPVPLEQQE--KPFAPMVITGSID 184

Query: 515 FDGLGPISWW 544
            +GLGP+SWW
Sbjct: 185 DEGLGPVSWW 194


>dbj|BAK08181.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 210

 Score =  201 bits (510), Expect = 2e-49
 Identities = 100/181 (55%), Positives = 124/181 (68%), Gaps = 1/181 (0%)
 Frame = +2

Query: 5   IEHTXXXXXXXXXXXXDQAIKGELETLFLDKVIANLGLCVSVYDIRNIDGGFIFPGDGAS 184
           IEH               AIK ELE LFLDKV+ANLGLCVSVYDIR ++GGFIFPG+G S
Sbjct: 7   IEHNLPMPPHLLNRPLVDAIKSELERLFLDKVVANLGLCVSVYDIRKVEGGFIFPGEGCS 66

Query: 185 TFTVNFRLIVFRPFXXXXXXXXXXXXDAKGLRLSLGFFKDITLPAHLLPNPSKFGEDGKW 364
           T+TV+FRL++FRPF            D KGL++SL FF DI +P HL+   +  GEDG+W
Sbjct: 67  TYTVSFRLLMFRPFIGEVLVGKISGYDEKGLQVSLDFFSDICIPGHLMQFGTVRGEDGRW 126

Query: 365 TWDF-NGTELPIEKEDEIRFKVHSIRYPPIPVEQEKDAKPFAPMVITASIDFDGLGPISW 541
                +G ELP++ +DEIRF V SI+YPPIPVEQ++D +PFAPM I  SI  DGLG ++W
Sbjct: 127 ALKTEDGDELPLDIDDEIRFLVSSIKYPPIPVEQKEDDRPFAPMQINGSIKGDGLGLLAW 186

Query: 542 W 544
           W
Sbjct: 187 W 187


>ref|NP_001241897.1| uncharacterized protein LOC100800770 [Glycine max]
           gi|255644932|gb|ACU22966.1| unknown [Glycine max]
          Length = 214

 Score =  199 bits (506), Expect = 6e-49
 Identities = 102/200 (51%), Positives = 125/200 (62%), Gaps = 20/200 (10%)
 Frame = +2

Query: 5   IEHTXXXXXXXXXXXXDQAIKGELETLFLDKVIANLGLCVSVYDIRNIDGGFIFPGDGAS 184
           IEH              +AI  ELE LFLDKVIANLGLC+SVYDIR+IDGGFIFPGDGA 
Sbjct: 7   IEHKLPLPPSRFVLPIREAIHMELEKLFLDKVIANLGLCISVYDIRSIDGGFIFPGDGAP 66

Query: 185 TFTVNFRLIVFRPFXXXXXXXXXXXXDAKGLRLSLGFFKDITLPAHLLPNPSKFGE---- 352
           T+TV F LI+FRPF            DA GLRL++GFF DI +PA  LP+P+ F E    
Sbjct: 67  TYTVVFNLIMFRPFEKEIITARLLSSDADGLRLTIGFFDDIYIPASRLPDPNHFVETEQK 126

Query: 353 ----------------DGKWTWDFNGTELPIEKEDEIRFKVHSIRYPPIPVEQEKDAKPF 484
                            G W WD+N  E PI+  D  +F+V ++ YP IPVEQ K++KPF
Sbjct: 127 KRVFSGQESTTNSSSKKGVWYWDYNEQEYPIQDTDVTKFRVTNVSYPQIPVEQPKESKPF 186

Query: 485 APMVITASIDFDGLGPISWW 544
           APM+I+ ++D DGLGP+SWW
Sbjct: 187 APMLISGAMDDDGLGPVSWW 206