BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00013845
         (326 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002515520.1| RNA-dependent RNA polymerase, putative [Rici...    45   2e-07
ref|XP_002457941.1| hypothetical protein SORBIDRAFT_03g022880 [S...    48   3e-07
ref|NP_001142097.1| uncharacterized protein LOC100274261 [Zea ma...    48   3e-07
gb|EEE54718.1| hypothetical protein OsJ_02054 [Oryza sativa Japo...    44   4e-07
sp|Q8LHH9.1|SHL2_ORYSJ RecName: Full=Probable RNA-dependent RNA ...    44   4e-07

>ref|XP_002515520.1| RNA-dependent RNA polymerase, putative [Ricinus communis]
            gi|223545464|gb|EEF46969.1| RNA-dependent RNA polymerase,
            putative [Ricinus communis]
          Length = 1203

 Score = 45.4 bits (106), Expect(2) = 2e-07
 Identities = 22/39 (56%), Positives = 27/39 (69%), Gaps = 3/39 (7%)
 Frame = +2

Query: 68   NAIQLAELATTVIDYPKIGKFVIMP*SLRP---PDFAGR 175
            N I+LAELA T +D+PK GK V MP  L+P   PDF G+
Sbjct: 943  NCIKLAELAATAVDFPKTGKLVTMPPHLKPKLYPDFMGK 981



 Score = 34.7 bits (78), Expect(2) = 2e-07
 Identities = 15/23 (65%), Positives = 16/23 (69%)
 Frame = +1

Query: 4   GAICNAHIVLTDRSEYGDSYEKC 72
           GAICNAH+V  D SEYG   E C
Sbjct: 922 GAICNAHVVHADLSEYGALDENC 944


>ref|XP_002457941.1| hypothetical protein SORBIDRAFT_03g022880 [Sorghum bicolor]
            gi|241929916|gb|EES03061.1| hypothetical protein
            SORBIDRAFT_03g022880 [Sorghum bicolor]
          Length = 1207

 Score = 47.8 bits (112), Expect(2) = 3e-07
 Identities = 25/44 (56%), Positives = 28/44 (63%), Gaps = 3/44 (6%)
 Frame = +2

Query: 53   GTHMRNAIQLAELATTVIDYPKIGKFVIMP*SLRP---PDFAGR 175
            G      IQLAELA T +D+PK GK V MP SLRP   PDF G+
Sbjct: 950  GAMDEKCIQLAELAATAVDFPKTGKIVSMPPSLRPKLYPDFMGK 993



 Score = 31.6 bits (70), Expect(2) = 3e-07
 Identities = 14/23 (60%), Positives = 15/23 (65%)
 Frame = +1

Query: 4    GAICNAHIVLTDRSEYGDSYEKC 72
            G I NAH+V  D SEYG   EKC
Sbjct: 934  GPISNAHVVHADMSEYGAMDEKC 956


>ref|NP_001142097.1| uncharacterized protein LOC100274261 [Zea mays]
           gi|194707104|gb|ACF87636.1| unknown [Zea mays]
          Length = 552

 Score = 47.8 bits (112), Expect(2) = 3e-07
 Identities = 25/44 (56%), Positives = 28/44 (63%), Gaps = 3/44 (6%)
 Frame = +2

Query: 53  GTHMRNAIQLAELATTVIDYPKIGKFVIMP*SLRP---PDFAGR 175
           G      IQLAELA T +D+PK GK V MP SLRP   PDF G+
Sbjct: 295 GAMDEKCIQLAELAATAVDFPKTGKIVSMPASLRPKLYPDFMGK 338



 Score = 31.6 bits (70), Expect(2) = 3e-07
 Identities = 14/23 (60%), Positives = 15/23 (65%)
 Frame = +1

Query: 4   GAICNAHIVLTDRSEYGDSYEKC 72
           G I NAH+V  D SEYG   EKC
Sbjct: 279 GPISNAHVVHADMSEYGAMDEKC 301


>gb|EEE54718.1| hypothetical protein OsJ_02054 [Oryza sativa Japonica Group]
          Length = 1571

 Score = 43.5 bits (101), Expect(2) = 4e-07
 Identities = 22/44 (50%), Positives = 26/44 (59%), Gaps = 3/44 (6%)
 Frame = +2

Query: 53   GTHMRNAIQLAELATTVIDYPKIGKFVIMP*SLRP---PDFAGR 175
            G      I LAELA T +D+PK GK  IMP  L+P   PDF G+
Sbjct: 1314 GAMDEKCIHLAELAATAVDFPKTGKLAIMPPHLKPKVYPDFMGK 1357



 Score = 35.0 bits (79), Expect(2) = 4e-07
 Identities = 15/23 (65%), Positives = 16/23 (69%)
 Frame = +1

Query: 4    GAICNAHIVLTDRSEYGDSYEKC 72
            G ICNAH+V  D SEYG   EKC
Sbjct: 1298 GRICNAHVVHADLSEYGAMDEKC 1320


>sp|Q8LHH9.1|SHL2_ORYSJ RecName: Full=Probable RNA-dependent RNA polymerase SHL2; AltName:
            Full=Protein SHOOTLESS 2 gi|21328146|dbj|BAC00725.1|
            putative RNA-dependent RNA polymerase [Oryza sativa
            Japonica Group] gi|157279691|dbj|BAF80151.1| SHOOTLESS2
            [Oryza sativa Japonica Group]
          Length = 1218

 Score = 43.5 bits (101), Expect(2) = 4e-07
 Identities = 22/44 (50%), Positives = 26/44 (59%), Gaps = 3/44 (6%)
 Frame = +2

Query: 53   GTHMRNAIQLAELATTVIDYPKIGKFVIMP*SLRP---PDFAGR 175
            G      I LAELA T +D+PK GK  IMP  L+P   PDF G+
Sbjct: 961  GAMDEKCIHLAELAATAVDFPKTGKLAIMPPHLKPKVYPDFMGK 1004



 Score = 35.0 bits (79), Expect(2) = 4e-07
 Identities = 15/23 (65%), Positives = 16/23 (69%)
 Frame = +1

Query: 4    GAICNAHIVLTDRSEYGDSYEKC 72
            G ICNAH+V  D SEYG   EKC
Sbjct: 945  GRICNAHVVHADLSEYGAMDEKC 967