BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00013844
         (1463 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002271291.1| PREDICTED: splicing factor 3B subunit 4 [Vit...   320   8e-85
ref|XP_002516394.1| spliceosome associated protein, putative [Ri...   317   7e-84
ref|XP_004147654.1| PREDICTED: splicing factor 3B subunit 4-like...   308   2e-81
gb|AEI98619.1| hypothetical protein 111O18.6 [Coffea canephora]       304   4e-80
ref|XP_003600696.1| Splicing factor 3B subunit [Medicago truncat...   295   3e-77

>ref|XP_002271291.1| PREDICTED: splicing factor 3B subunit 4 [Vitis vinifera]
          Length = 373

 Score =  320 bits (819), Expect = 8e-85
 Identities = 159/198 (80%), Positives = 171/198 (86%), Gaps = 3/198 (1%)
 Frame = +3

Query: 132 QASQDKKSLDVGANLFVGNLDPDVDEKLLYDTFNAFGVIVTNPKIMRDPESGNSRGFGFI 311
           +ASQDKKSLDVGANLFVGNLDPDVDEKLLYDTF+AFGVIVTNPKIMRDP++GNSRGFGF+
Sbjct: 100 KASQDKKSLDVGANLFVGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFV 159

Query: 312 SYDSFETSDAAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERVLAASNP-VQKNRP 488
           SYDSFE SDAAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERVLAASNP   K+RP
Sbjct: 160 SYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERVLAASNPSAPKSRP 219

Query: 489 HTLFASGPPTLAPGPQSNGTIGAPIPPRPFSTSSIPQGQIPPPRLPVPQSGAFPPPMQMG 668
           HTLFASGPPTL   PQ+NG +GAP+PPRPF+   +P   IP  R P PQSGAF PPMQ+ 
Sbjct: 220 HTLFASGPPTLPNVPQANGNMGAPMPPRPFANGVVPPVPIPAMRPPPPQSGAF-PPMQLA 278

Query: 669 GPPSWPGHPQ--GQMSAP 716
           GPPSW G PQ  GQ   P
Sbjct: 279 GPPSWQGQPQQPGQPMQP 296


>ref|XP_002516394.1| spliceosome associated protein, putative [Ricinus communis]
           gi|223544492|gb|EEF46011.1| spliceosome associated
           protein, putative [Ricinus communis]
          Length = 376

 Score =  317 bits (811), Expect = 7e-84
 Identities = 155/201 (77%), Positives = 173/201 (86%), Gaps = 3/201 (1%)
 Frame = +3

Query: 132 QASQDKKSLDVGANLFVGNLDPDVDEKLLYDTFNAFGVIVTNPKIMRDPESGNSRGFGFI 311
           +ASQDKKSLDVGANLF+GNLDPDVDEKLL+DTF+AFGVIVTNPKIMRDPE+GNSRGFGFI
Sbjct: 100 KASQDKKSLDVGANLFIGNLDPDVDEKLLHDTFSAFGVIVTNPKIMRDPETGNSRGFGFI 159

Query: 312 SYDSFETSDAAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERVLAASNP-VQKNRP 488
           SYDSF+ SDAAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERVLAASNP  QK+RP
Sbjct: 160 SYDSFDASDAAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERVLAASNPSSQKSRP 219

Query: 489 HTLFASGPPTLAPGPQSNGTIGAPIPPRPFSTSSIPQGQIPPPRLPVPQSGAFPPPMQMG 668
           HTLFASGPPTL   PQ+NGT+GAP+PPRPF+  ++P G +PP R   P + AF PPMQ+ 
Sbjct: 220 HTLFASGPPTLPSIPQANGTVGAPVPPRPFANGAVPPGPVPPLRPSAPPTAAF-PPMQVA 278

Query: 669 GPPSWPGHP--QGQMSAPHGM 725
           G P+W G P   GQ+  P  M
Sbjct: 279 GQPAWQGQPPQPGQVMPPQVM 299


>ref|XP_004147654.1| PREDICTED: splicing factor 3B subunit 4-like [Cucumis sativus]
           gi|449498825|ref|XP_004160645.1| PREDICTED: splicing
           factor 3B subunit 4-like [Cucumis sativus]
          Length = 379

 Score =  308 bits (790), Expect = 2e-81
 Identities = 154/194 (79%), Positives = 164/194 (84%), Gaps = 2/194 (1%)
 Frame = +3

Query: 132 QASQDKKSLDVGANLFVGNLDPDVDEKLLYDTFNAFGVIVTNPKIMRDPESGNSRGFGFI 311
           +ASQDKKSLDVGANLF+GNLDPDVDEKLLYDTF+AFGVIVTNPKIMRDP++GNSRGFGFI
Sbjct: 100 KASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFI 159

Query: 312 SYDSFETSDAAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERVLAASNPVQKNRPH 491
           SYDSFE SDAAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERVLAASNP QK+RPH
Sbjct: 160 SYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERVLAASNP-QKSRPH 218

Query: 492 TLFASGPPTLAPGPQSNGTIGAPIPPRPFSTSSIPQGQIPPPRLPVPQSGAFPPPMQMGG 671
           TLFASGPPTL    Q NG IGAP+PPRPF+  +I    IP  R   PQ  AFPP    G 
Sbjct: 219 TLFASGPPTLPKVAQPNGAIGAPVPPRPFANGAITPNPIPAIRPSPPQGVAFPPMPMAGQ 278

Query: 672 PPSWPGHPQ--GQM 707
           PP+W G PQ  GQM
Sbjct: 279 PPAWQGQPQQPGQM 292


>gb|AEI98619.1| hypothetical protein 111O18.6 [Coffea canephora]
          Length = 368

 Score =  304 bits (778), Expect = 4e-80
 Identities = 151/197 (76%), Positives = 167/197 (84%), Gaps = 2/197 (1%)
 Frame = +3

Query: 132 QASQDKKSLDVGANLFVGNLDPDVDEKLLYDTFNAFGVIVTNPKIMRDPESGNSRGFGFI 311
           +ASQDKKS+DVGANLF+GNLDPDVDEKLLYDTF+AFGVIVTNPKIMRDPE+GNSRGFGFI
Sbjct: 100 KASQDKKSVDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPETGNSRGFGFI 159

Query: 312 SYDSFETSDAAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERVLAASNP-VQKNRP 488
           SYDSFE SDAAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERVLAASNP VQK+RP
Sbjct: 160 SYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERVLAASNPNVQKSRP 219

Query: 489 HTLFASGPPTLAPGPQSNGTIGAPIPPRPFSTSSIPQGQIPPPRLPVPQSGAFPPPMQMG 668
           HT+FASGPPTL    Q++  I AP+PPRPF+  ++P   IPP R P PQ+  F PPM + 
Sbjct: 220 HTMFASGPPTLQNVAQASANIAAPVPPRPFANGNVPPTSIPPFRPPPPQASMF-PPMPLP 278

Query: 669 GPPSWPG-HPQGQMSAP 716
            P SW G  P GQ + P
Sbjct: 279 PPQSWQGQQPPGQTALP 295


>ref|XP_003600696.1| Splicing factor 3B subunit [Medicago truncatula]
           gi|355489744|gb|AES70947.1| Splicing factor 3B subunit
           [Medicago truncatula]
          Length = 379

 Score =  295 bits (754), Expect = 3e-77
 Identities = 150/203 (73%), Positives = 162/203 (79%), Gaps = 5/203 (2%)
 Frame = +3

Query: 132 QASQDKKSLDVGANLFVGNLDPDVDEKLLYDTFNAFGVIVTNPKIMRDPESGNSRGFGFI 311
           +ASQDKKSLDVGANLF+GNLDPDVDEKLLYDTF+AFGVIVTNPKIMRDP++GNSRGFGFI
Sbjct: 100 KASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFI 159

Query: 312 SYDSFETSDAAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERVLAASNP-VQKNRP 488
           SYDSFE SD+AIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERVLAASNP  QK+RP
Sbjct: 160 SYDSFEASDSAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERVLAASNPTAQKSRP 219

Query: 489 HTLFASGPPTLAPGPQSNGTIGAPIPPRPFSTSSIPQG----QIPPPRLPVPQSGAFPPP 656
           HTLFASGPP+L   PQ+NGTI AP+PPRPF+    P      Q PPP+ P  Q    PPP
Sbjct: 220 HTLFASGPPSLPNAPQANGTIPAPVPPRPFANGVAPPPIHVIQPPPPQAPAFQPMQMPPP 279

Query: 657 MQMGGPPSWPGHPQGQMSAPHGM 725
               G   W    QGQ     GM
Sbjct: 280 ----GQQVWHQQQQGQPMMQQGM 298