BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00013817
         (550 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002515076.1| ribonucleoprotein, chloroplast, putative [Ri...   112   3e-23
ref|XP_004166512.1| PREDICTED: 28 kDa ribonucleoprotein, chlorop...   109   3e-22
ref|XP_004140529.1| PREDICTED: 31 kDa ribonucleoprotein, chlorop...   109   3e-22
gb|AFK45924.1| unknown [Lotus japonicus]                              107   2e-21
ref|XP_002320231.1| predicted protein [Populus trichocarpa] gi|2...   102   3e-20

>ref|XP_002515076.1| ribonucleoprotein, chloroplast, putative [Ricinus communis]
           gi|223545556|gb|EEF47060.1| ribonucleoprotein,
           chloroplast, putative [Ricinus communis]
          Length = 281

 Score =  112 bits (281), Expect = 3e-23
 Identities = 67/148 (45%), Positives = 86/148 (58%), Gaps = 22/148 (14%)
 Frame = -1

Query: 379 SFPQPAFSCSSISHESPPPAPCLISNTFNRPTTTNGAFRVFAV----------------- 251
           S P P FSC   SH      P L S++   P   N + RVFA+                 
Sbjct: 21  SLPFPKFSCFLQSHSRE--IPLLSSSSSLWPA--NKSKRVFAILALVNEESVVAEEVDRE 76

Query: 250 -----AEEQPLSASAQEPPQVIPCQLYVCNLPRSCDISQLLDMFKPYGAVQSVEISRNTE 86
                +EE  L    ++ P+  PC+LYVCNLPRSCDI++L+++FKPYG V SVE+SRN E
Sbjct: 77  ENENESEEDELGRQLKKQPR--PCELYVCNLPRSCDIAELVELFKPYGTVISVEVSRNPE 134

Query: 85  TGISKGCGYVTMASIDETIAAVTALDGS 2
           TGIS+GCG+VTM SI+    A+ ALDGS
Sbjct: 135 TGISRGCGFVTMGSINSAKNAIAALDGS 162


>ref|XP_004166512.1| PREDICTED: 28 kDa ribonucleoprotein, chloroplastic-like [Cucumis
           sativus]
          Length = 284

 Score =  109 bits (272), Expect = 3e-22
 Identities = 60/117 (51%), Positives = 74/117 (63%), Gaps = 1/117 (0%)
 Frame = -1

Query: 349 SISHESPPPAPCLISNTFNRPTTTNGAFRVFAVAEEQPLSASAQEPPQVI-PCQLYVCNL 173
           S+ H      P L +   N    T  A     V  E  LS   QE  ++  PC+LYVCNL
Sbjct: 50  SLRHNHGERFPVLFTVLDNESALTEEAIVEGDVKSEGSLSN--QEVKKLARPCELYVCNL 107

Query: 172 PRSCDISQLLDMFKPYGAVQSVEISRNTETGISKGCGYVTMASIDETIAAVTALDGS 2
           PRSCDI++L++MFKPYG V + E+SRN ETGISKGCGYVTM SI+    ++TALDGS
Sbjct: 108 PRSCDIAELVEMFKPYGTVLAAEVSRNPETGISKGCGYVTMGSINSAKVSITALDGS 164


>ref|XP_004140529.1| PREDICTED: 31 kDa ribonucleoprotein, chloroplastic-like [Cucumis
           sativus]
          Length = 286

 Score =  109 bits (272), Expect = 3e-22
 Identities = 60/117 (51%), Positives = 74/117 (63%), Gaps = 1/117 (0%)
 Frame = -1

Query: 349 SISHESPPPAPCLISNTFNRPTTTNGAFRVFAVAEEQPLSASAQEPPQVI-PCQLYVCNL 173
           S+ H      P L +   N    T  A     V  E  LS   QE  ++  PC+LYVCNL
Sbjct: 52  SLRHNHGERFPVLFTVLDNESALTEEAIVEGDVKSEGSLSN--QEVKKLARPCELYVCNL 109

Query: 172 PRSCDISQLLDMFKPYGAVQSVEISRNTETGISKGCGYVTMASIDETIAAVTALDGS 2
           PRSCDI++L++MFKPYG V + E+SRN ETGISKGCGYVTM SI+    ++TALDGS
Sbjct: 110 PRSCDIAELVEMFKPYGTVLAAEVSRNPETGISKGCGYVTMGSINSAKVSITALDGS 166


>gb|AFK45924.1| unknown [Lotus japonicus]
          Length = 290

 Score =  107 bits (266), Expect = 2e-21
 Identities = 66/159 (41%), Positives = 85/159 (53%), Gaps = 33/159 (20%)
 Frame = -1

Query: 379 SFPQPAFSCSSISHESPPPA--------------PCLISNTFN------RPTTTNGAFRV 260
           SFP P+ + +      PPP+              PCL S T        +PT    A   
Sbjct: 8   SFPSPSSALTFNHKPQPPPSSKPFVSHFRHPNCDPCLFSTTTILQPSTWKPTLFVAAAIP 67

Query: 259 FAVAEEQPLSAS----------AQEPPQVIP---CQLYVCNLPRSCDISQLLDMFKPYGA 119
            AV  E+ L+             Q+PPQ  P   C++YVCNLPRSC+ + LLD+FKPYG 
Sbjct: 68  EAVNGEKSLNTQNDDVFKNEEEEQQPPQRRPRGPCEIYVCNLPRSCNAAHLLDLFKPYGT 127

Query: 118 VQSVEISRNTETGISKGCGYVTMASIDETIAAVTALDGS 2
           + SVE+SRN ETG S+GCGYV M SI+   +A+ ALDGS
Sbjct: 128 IISVEVSRNAETGESRGCGYVIMESINSAKSAIAALDGS 166


>ref|XP_002320231.1| predicted protein [Populus trichocarpa] gi|222861004|gb|EEE98546.1|
           predicted protein [Populus trichocarpa]
          Length = 287

 Score =  102 bits (255), Expect = 3e-20
 Identities = 45/69 (65%), Positives = 58/69 (84%)
 Frame = -1

Query: 208 QVIPCQLYVCNLPRSCDISQLLDMFKPYGAVQSVEISRNTETGISKGCGYVTMASIDETI 29
           Q  PC+LYVCNLPRS DI+ L++MFKP+G+V SVE+SRN ETG+S+GCGY+TM S++   
Sbjct: 97  QAKPCELYVCNLPRSSDIADLVEMFKPFGSVLSVEVSRNPETGVSRGCGYITMGSVESAR 156

Query: 28  AAVTALDGS 2
            AV+ALDGS
Sbjct: 157 NAVSALDGS 165