BLASTX nr result

ID: Coptis21_contig00013736 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00013736
         (493 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002534015.1| suppressor of ty, putative [Ricinus communis...    55   4e-12
ref|XP_003555232.1| PREDICTED: uncharacterized protein LOC100777...    59   5e-07
ref|XP_003555224.1| PREDICTED: uncharacterized protein LOC100818...    59   5e-07
ref|XP_003535734.1| PREDICTED: putative transcription elongation...    59   5e-07
ref|XP_002272748.2| PREDICTED: uncharacterized protein LOC100256...    58   9e-07

>ref|XP_002534015.1| suppressor of ty, putative [Ricinus communis]
           gi|223525980|gb|EEF28368.1| suppressor of ty, putative
           [Ricinus communis]
          Length = 1547

 Score = 55.1 bits (131), Expect(2) = 4e-12
 Identities = 24/37 (64%), Positives = 32/37 (86%)
 Frame = +3

Query: 3   LKGHLCGVVAIYRSDITIKVDSQIKVLSVKCEHLSEV 113
           LKG+LC V+AI  SD+T+KVDS+ K+ +VKCEHLSE+
Sbjct: 618 LKGYLCRVLAIRYSDVTVKVDSKHKIFTVKCEHLSEI 654



 Score = 40.8 bits (94), Expect(2) = 4e-12
 Identities = 40/128 (31%), Positives = 53/128 (41%), Gaps = 12/128 (9%)
 Frame = +2

Query: 143  DGFGTQGGKGDEPWAAKTSEKATDSCGNTTTFGGDPI*GKEGDDPWGSKASSKTATELGN 322
            D  GT+GG   + W   T    T + G+    GG      E +D W +K S+   +  G 
Sbjct: 676  DLLGTEGGS--KGW---TDGAGTSADGDRWNAGGITA---ESEDGW-NKTSTNIESSGGT 726

Query: 323  GTGFGGEQQS-------WG--KQDCGDKMRKTAVNLDKGRSVAENNRSGWASGALI---Q 466
              G+G    S       WG  K D G+     A   +K ++VAEN  S W   A     Q
Sbjct: 727  SGGWGKAADSSKDSGDGWGQAKLDPGNSTLDAAAAWNKEKNVAENPTSSWGDVATAKNQQ 786

Query: 467  DGWGSKGT 490
            D W SK T
Sbjct: 787  DSWTSKDT 794


>ref|XP_003555232.1| PREDICTED: uncharacterized protein LOC100777969 [Glycine max]
          Length = 967

 Score = 58.5 bits (140), Expect = 5e-07
 Identities = 25/37 (67%), Positives = 34/37 (91%)
 Frame = +3

Query: 3   LKGHLCGVVAIYRSDITIKVDSQIKVLSVKCEHLSEV 113
           LKG++C V+A+ R+D+T+K+DSQ KVL+VKCEHLSEV
Sbjct: 72  LKGYICRVIALRRADVTVKLDSQQKVLTVKCEHLSEV 108


>ref|XP_003555224.1| PREDICTED: uncharacterized protein LOC100818587 [Glycine max]
          Length = 1495

 Score = 58.5 bits (140), Expect = 5e-07
 Identities = 25/37 (67%), Positives = 34/37 (91%)
 Frame = +3

Query: 3   LKGHLCGVVAIYRSDITIKVDSQIKVLSVKCEHLSEV 113
           LKG++C V+A+ R+D+T+K+DSQ KVL+VKCEHLSEV
Sbjct: 598 LKGYICRVIALRRADVTVKLDSQQKVLTVKCEHLSEV 634


>ref|XP_003535734.1| PREDICTED: putative transcription elongation factor SPT5 homolog
           2-like [Glycine max]
          Length = 712

 Score = 58.5 bits (140), Expect = 5e-07
 Identities = 25/37 (67%), Positives = 34/37 (91%)
 Frame = +3

Query: 3   LKGHLCGVVAIYRSDITIKVDSQIKVLSVKCEHLSEV 113
           LKG++C V+A+ R+D+T+K+DSQ KVL+VKCEHLSEV
Sbjct: 597 LKGYICRVIALRRADVTVKLDSQQKVLTVKCEHLSEV 633


>ref|XP_002272748.2| PREDICTED: uncharacterized protein LOC100256388 [Vitis vinifera]
          Length = 2667

 Score = 57.8 bits (138), Expect = 9e-07
 Identities = 27/37 (72%), Positives = 33/37 (89%)
 Frame = +3

Query: 3    LKGHLCGVVAIYRSDITIKVDSQIKVLSVKCEHLSEV 113
            LKG+LC V+AI  SD+T+K+DSQ KVL+VKCEHLSEV
Sbjct: 1611 LKGYLCRVLAIRYSDVTVKLDSQHKVLTVKCEHLSEV 1647


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