BLASTX nr result
ID: Coptis21_contig00013660
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis21_contig00013660
(2088 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002278999.1| PREDICTED: pentatricopeptide repeat-containi... 399 e-128
emb|CAN63553.1| hypothetical protein VITISV_003195 [Vitis vinifera] 392 e-126
ref|XP_003530467.1| PREDICTED: pentatricopeptide repeat-containi... 383 e-121
ref|XP_003552628.1| PREDICTED: pentatricopeptide repeat-containi... 375 e-119
ref|XP_002329308.1| predicted protein [Populus trichocarpa] gi|2... 357 e-112
>ref|XP_002278999.1| PREDICTED: pentatricopeptide repeat-containing protein At3g02490,
mitochondrial-like [Vitis vinifera]
Length = 650
Score = 399 bits (1024), Expect(2) = e-128
Identities = 219/487 (44%), Positives = 319/487 (65%), Gaps = 2/487 (0%)
Frame = +3
Query: 18 VLTDIIYKSNSNDEINNGLKSNDVLITHELVLSMLRSLDGNVEIARKFFKFVDESEKERL 197
V TDI K DEI N ++S+D++++HELVL +L +L+ N E+AR F +V +E ERL
Sbjct: 85 VFTDIFSKPKGFDEIKNEVESSDIVVSHELVLKVLENLESNPEVARSVFDWVLRAESERL 144
Query: 198 SSKCYNVMLGILGGRKDCVNEFWGLLEVMKKKKGYGISRRTYEKVVESFEKDGLVNDLDR 377
SSK YN+MLGILG V+EFW L+EVMKKK GYG+S+ Y K +E+FEK+ L +DL++
Sbjct: 145 SSKSYNLMLGILGSN-GFVSEFWDLVEVMKKK-GYGVSKAAYVKALENFEKEALGSDLEK 202
Query: 378 LKELYKRPD-DISMKSVASGIANVLRERDWEDLPDDVKERILGMNCVWSNELVKMVVEKL 554
L+ L+ D S++ + S ++ ++R W D +V+ ++ + +S +LV MV+E L
Sbjct: 203 LRGLFASGSVDDSIQKICSRVSKIIRSEVWGD---NVEGQLHNLKVTFSGDLVAMVLENL 259
Query: 555 DGFPRKMILFIWWLQGNLSFKPDKFLYDGLLRVLASSHNVRQIHPIDPFWRIVEEMQGVG 734
P K ++F W++ + K DK Y+ +LRVL + + FW++ +EM+ G
Sbjct: 260 GLEPMKALIFFRWVEESDLVKHDKQTYNAMLRVLGREDCIER------FWKVADEMRNAG 313
Query: 735 YEMEMNTYFFVMGLFCKRRLIEDAVELYEYKMGSADKPPVQDGIFLLRKAVMWSKELNMQ 914
YEME+ TYF V+G F KR++I++ V+LYE+ M A+KP + D FLLRK V+ SK L++
Sbjct: 314 YEMEVATYFKVVGRFYKRKMIKEVVDLYEFAMSGANKPSMYDCTFLLRKIVV-SKVLDIS 372
Query: 915 LFSRVVETFTNGGNSLTTSILDMVVKSLISVNRLKECGTILKAMEKVGFVPTSEVYNKII 1094
LFSRVV T+T GGN LT S+LD ++KSL SV R EC +LKAME+ G+V S + NKI
Sbjct: 373 LFSRVVRTYTEGGNILTKSMLDAILKSLTSVGRFGECNKLLKAMEEGGYVVGSGMQNKIA 432
Query: 1095 FHLGSVDR-GEAVLMISEMKASGNCPDSKTWTSLIHGQCLAGNAKSASYSFRTMVEEVGV 1271
F L S + EA ++ M+ S P+ +TW+SLI G C+AG+ AS F+ MVE+ GV
Sbjct: 433 FGLSSARKTDEANEFMNNMEDSDCRPNYRTWSSLIEGYCVAGDLDKASDCFQKMVEKEGV 492
Query: 1272 TYAGHAFEEVLKGFCRKRKATDAYNFLSEMVGQHQLRPRHLAYKMLIQSLLVQGGFNEAL 1451
+YAG+AFE ++ +C K ++ DA L ++ + + +P H YK+LI LLVQGGF AL
Sbjct: 493 SYAGYAFEVLVNAYCCKGRSVDACGLLCDLASKEKFKPWHSTYKLLISKLLVQGGFQAAL 552
Query: 1452 SLLGLMK 1472
+LLGLMK
Sbjct: 553 NLLGLMK 559
Score = 88.2 bits (217), Expect(2) = e-128
Identities = 42/64 (65%), Positives = 51/64 (79%)
Frame = +1
Query: 1561 TGDDAISFLKAVTDRKFPSTTVVVLMIEAFLKAGRHSEAQNCFSKSPSYIRNHADVLNLF 1740
TGDDAI+FL+A+T ++FPST+V + EAF KAGRH+EAQ+ SK P YIRNHADVLNLF
Sbjct: 579 TGDDAITFLRAMTVKRFPSTSVFLQTFEAFFKAGRHNEAQDFLSKCPGYIRNHADVLNLF 638
Query: 1741 VAHK 1752
K
Sbjct: 639 YTMK 642
>emb|CAN63553.1| hypothetical protein VITISV_003195 [Vitis vinifera]
Length = 650
Score = 392 bits (1007), Expect(2) = e-126
Identities = 217/487 (44%), Positives = 315/487 (64%), Gaps = 2/487 (0%)
Frame = +3
Query: 18 VLTDIIYKSNSNDEINNGLKSNDVLITHELVLSMLRSLDGNVEIARKFFKFVDESEKERL 197
V TDI K DEI N ++S+D++++HELVL +L +L+ N E+AR F +V +E ERL
Sbjct: 85 VFTDIFSKPKGFDEIKNEVESSDIVVSHELVLKVLENLESNPEVARXVFDWVLRAESERL 144
Query: 198 SSKCYNVMLGILGGRKDCVNEFWGLLEVMKKKKGYGISRRTYEKVVESFEKDGLVNDLDR 377
SSK YN+MLGILG V+EFW L+EVMKKK GYG+S+ Y K +E+FEK+ L +DL++
Sbjct: 145 SSKSYNLMLGILGSN-GFVSEFWDLVEVMKKK-GYGVSKAAYVKALENFEKEALGSDLEK 202
Query: 378 LKELYKRPD-DISMKSVASGIANVLRERDWEDLPDDVKERILGMNCVWSNELVKMVVEKL 554
L+ L+ D S++ + S ++ ++R W D +V+ ++ + +S +LV MV+E L
Sbjct: 203 LRGLFASGSVDNSIQKICSRVSKIIRSEVWGD---NVEGQLHNLKVTFSGDLVAMVLENL 259
Query: 555 DGFPRKMILFIWWLQGNLSFKPDKFLYDGLLRVLASSHNVRQIHPIDPFWRIVEEMQGVG 734
P K ++F W++ + K DK Y+ +LRVL + + FW++ +EM+ G
Sbjct: 260 GLEPMKALIFFRWVEESDLXKHDKXTYNAMLRVLGREDCIER------FWKVADEMRNAG 313
Query: 735 YEMEMNTYFFVMGLFCKRRLIEDAVELYEYKMGSADKPPVQDGIFLLRKAVMWSKELNMQ 914
YEME+ TY V+G F KR++I + V+LYE+ M A+KP + D FLLRK V+ SK L++
Sbjct: 314 YEMEVATYXKVVGRFYKRKMIXEVVDLYEFAMSGANKPSMYDCTFLLRKIVV-SKVLDIS 372
Query: 915 LFSRVVETFTNGGNSLTTSILDMVVKSLISVNRLKECGTILKAMEKVGFVPTSEVYNKII 1094
LFSRVV T+T GGN LT S+LD +KSL SV R EC +LKAME+ G+V S + NKI
Sbjct: 373 LFSRVVRTYTEGGNILTKSMLDAXLKSLTSVGRFGECNKLLKAMEEGGYVVGSGMQNKIA 432
Query: 1095 FHLGSVDR-GEAVLMISEMKASGNCPDSKTWTSLIHGQCLAGNAKSASYSFRTMVEEVGV 1271
F L S + EA ++ M+ S P+ +TW+SLI G C+AG+ AS F+ MVE+ GV
Sbjct: 433 FGLSSARKTDEANEFMNNMEDSDCRPNYRTWSSLIEGYCVAGDLDKASDCFQKMVEKEGV 492
Query: 1272 TYAGHAFEEVLKGFCRKRKATDAYNFLSEMVGQHQLRPRHLAYKMLIQSLLVQGGFNEAL 1451
+Y G+AFE ++ +C K ++ DA L ++ + + +P H YK+LI LLVQGGF AL
Sbjct: 493 SYXGYAFEVLVNAYCCKGRSVDACGLLCDLASKEKFKPWHSTYKLLISKLLVQGGFQAAL 552
Query: 1452 SLLGLMK 1472
+LLGLMK
Sbjct: 553 NLLGLMK 559
Score = 88.2 bits (217), Expect(2) = e-126
Identities = 42/64 (65%), Positives = 51/64 (79%)
Frame = +1
Query: 1561 TGDDAISFLKAVTDRKFPSTTVVVLMIEAFLKAGRHSEAQNCFSKSPSYIRNHADVLNLF 1740
TGDDAI+FL+A+T ++FPST+V + EAF KAGRH+EAQ+ SK P YIRNHADVLNLF
Sbjct: 579 TGDDAITFLRAMTVKRFPSTSVFLQTFEAFFKAGRHNEAQDFLSKCPGYIRNHADVLNLF 638
Query: 1741 VAHK 1752
K
Sbjct: 639 YTMK 642
>ref|XP_003530467.1| PREDICTED: pentatricopeptide repeat-containing protein At3g02490,
mitochondrial-like [Glycine max]
Length = 628
Score = 383 bits (984), Expect(2) = e-121
Identities = 214/486 (44%), Positives = 314/486 (64%), Gaps = 1/486 (0%)
Frame = +3
Query: 18 VLTDIIYKSNSNDEINNGLKSNDVLITHELVLSMLRSLDGNVEIARKFFKFVDESEKERL 197
++ DI K +++ L SN V+ITH+ VL++L LD NVE AR+FF +V E+ ERL
Sbjct: 65 LVVDIFSKPADSEDFKTLLDSNRVMITHDAVLAVLWKLDSNVEAARRFFLWVSENHPERL 124
Query: 198 SSKCYNVMLGILGGRKDCVNEFWGLLEVMKKKKGYGISRRTYEKVVESFEKDGLVNDLDR 377
SSKCYN ML +LG V+EFW L++VMKKK GYG+S+ E V+ESFEK G+V D+ +
Sbjct: 125 SSKCYNSMLRVLG-TNGVVHEFWDLVDVMKKK-GYGVSKGVKEIVLESFEKGGMVADVAK 182
Query: 378 LKELYKRPDDISMKSVASGIANVLRERDWEDLPDDVKERILGMNCVWSNELVKMVVEKLD 557
LK LY D+++ K++A + ++R W+D DV+ +I +N +S ++VKMV+E L
Sbjct: 183 LKGLY---DNLNEKNIAI-VCRIVRNNVWDD---DVERQIKDLNVGFSGDVVKMVLESLA 235
Query: 558 GFPRKMILFIWWLQGNLSFKPDKFLYDGLLRVLASSHNVRQIHPIDPFWRIVEEMQGVGY 737
P K ++F WL+ + FK D Y+ + RVL + ID FW++V +M+ G+
Sbjct: 236 SEPAKALIFFRWLEESGMFKQDGATYNAMARVLGREDS------IDRFWKLVGDMRNAGF 289
Query: 738 EMEMNTYFFVMGLFCKRRLIEDAVELYEYKMGSADKPPVQDGIFLLRKAVMWSKELNMQL 917
EME T+ V+G FCKRR+++DAVELYE+ M +KP VQ +FLLRK V KEL+M L
Sbjct: 290 EMEFETFVKVLGRFCKRRMVKDAVELYEFAMTGVNKPTVQCCVFLLRK-VAAGKELDMDL 348
Query: 918 FSRVVETFTNGGNSLTTSILDMVVKSLISVNRLKECGTILKAMEKVGFVPTSEVYNKIIF 1097
F RV++ FT GN LT S+ D V+K+L SV R E +LK ME VG + + +KI +
Sbjct: 349 FLRVLKVFTGSGNLLTDSMADAVLKTLTSVGRTGEWNKVLKEMEIVGCCRCN-LQSKIAY 407
Query: 1098 HLGSV-DRGEAVLMISEMKASGNCPDSKTWTSLIHGQCLAGNAKSASYSFRTMVEEVGVT 1274
LG+ ++ +A ++ ++AS + PD KTW SLI G C+AGN A SF+ +VE+ GV
Sbjct: 408 RLGAAGNKEQAHEFMNRIEASRSSPDRKTWDSLIEGHCVAGNLDKAFESFKEIVEKEGVA 467
Query: 1275 YAGHAFEEVLKGFCRKRKATDAYNFLSEMVGQHQLRPRHLAYKMLIQSLLVQGGFNEALS 1454
AG++F+ ++ +C+ +A DA L +V + +L+P H YK+L+ LLVQGGF +AL+
Sbjct: 468 SAGYSFDVLMNSYCQMNRAVDASKILCRLVNEKKLKPWHSTYKLLVTKLLVQGGFTDALN 527
Query: 1455 LLGLMK 1472
+LGLM+
Sbjct: 528 ILGLMR 533
Score = 80.5 bits (197), Expect(2) = e-121
Identities = 38/60 (63%), Positives = 46/60 (76%)
Frame = +1
Query: 1561 TGDDAISFLKAVTDRKFPSTTVVVLMIEAFLKAGRHSEAQNCFSKSPSYIRNHADVLNLF 1740
+G+ A FLKA+T ++FPST++ + M EAF K GRH EAQN SK P YIRNHADVLNLF
Sbjct: 553 SGNAAALFLKAMTSKRFPSTSMFLCMFEAFFKNGRHEEAQNFLSKCPRYIRNHADVLNLF 612
>ref|XP_003552628.1| PREDICTED: pentatricopeptide repeat-containing protein At3g02490,
mitochondrial-like [Glycine max]
Length = 629
Score = 375 bits (962), Expect(2) = e-119
Identities = 212/486 (43%), Positives = 308/486 (63%), Gaps = 1/486 (0%)
Frame = +3
Query: 18 VLTDIIYKSNSNDEINNGLKSNDVLITHELVLSMLRSLDGNVEIARKFFKFVDESEKERL 197
++ DI K +++ L SN V ITH+ VL++L D NV+ AR+FF++V E+ ERL
Sbjct: 65 LVADIFSKPVDSEDFKTLLGSNRVSITHDAVLAVLGKFDSNVDAARRFFQWVSENHPERL 124
Query: 198 SSKCYNVMLGILGGRKDCVNEFWGLLEVMKKKKGYGISRRTYEKVVESFEKDGLVNDLDR 377
SSKCYN ML +LG V+EFW L+ VMKKK GYG+S+ E+V+ESFEK G+ D+ +
Sbjct: 125 SSKCYNSMLCVLG-TNGFVDEFWDLVNVMKKK-GYGVSKGVKERVLESFEKGGMDGDVAK 182
Query: 378 LKELYKRPDDISMKSVASGIANVLRERDWEDLPDDVKERILGMNCVWSNELVKMVVEKLD 557
LK L+ D+ K++A + ++R W D DV+++I +N +S+E+VK V+E L
Sbjct: 183 LKGLF---DNSKEKNIAI-VCRIVRNNVWGD---DVEKQIEDLNVGFSSEVVKTVLESLV 235
Query: 558 GFPRKMILFIWWLQGNLSFKPDKFLYDGLLRVLASSHNVRQIHPIDPFWRIVEEMQGVGY 737
P K ++F WL+ + FK D Y+ + RVL ID FW++V +M+ G+
Sbjct: 236 LEPVKALIFFRWLEESGLFKHDGRTYNAMARVLGREDL------IDRFWKLVGDMRSAGF 289
Query: 738 EMEMNTYFFVMGLFCKRRLIEDAVELYEYKMGSADKPPVQDGIFLLRKAVMWSKELNMQL 917
EME T+ V+G FCKRR+++DAVELYE+ M A+KP VQ +FLLRK V KEL+ L
Sbjct: 290 EMEAETFVKVLGRFCKRRMVKDAVELYEFAMAGANKPTVQCCVFLLRK-VAAGKELDTDL 348
Query: 918 FSRVVETFTNGGNSLTTSILDMVVKSLISVNRLKECGTILKAMEKVGFVPTSEVYNKIIF 1097
FSRV++ FT GN LT S+ + V+KSL SV R E +LK ME GFV + +KI +
Sbjct: 349 FSRVLKVFTGNGNVLTDSVANAVLKSLTSVGRTGEWNKVLKEMEDCGFVAGGSLQSKIAY 408
Query: 1098 HLGSV-DRGEAVLMISEMKASGNCPDSKTWTSLIHGQCLAGNAKSASYSFRTMVEEVGVT 1274
LG+ ++ +A ++ ++ SG+ P KTW SLI G C+AGN A SF+ +VE+ GV
Sbjct: 409 RLGAAGNKEQAHEFMNRIEVSGSNPYRKTWESLIQGYCVAGNLDKAFESFKEIVEKEGVA 468
Query: 1275 YAGHAFEEVLKGFCRKRKATDAYNFLSEMVGQHQLRPRHLAYKMLIQSLLVQGGFNEALS 1454
AG++F ++ +C+ +A DA L +V + QL+P H YK+L+ LLVQGGF +AL+
Sbjct: 469 SAGYSFNVLMNSYCQMNRAVDASKILCRLVNEKQLKPWHSTYKLLVTKLLVQGGFTDALN 528
Query: 1455 LLGLMK 1472
+LGLM+
Sbjct: 529 ILGLMR 534
Score = 83.6 bits (205), Expect(2) = e-119
Identities = 39/60 (65%), Positives = 47/60 (78%)
Frame = +1
Query: 1561 TGDDAISFLKAVTDRKFPSTTVVVLMIEAFLKAGRHSEAQNCFSKSPSYIRNHADVLNLF 1740
+GDDA+ FLKA+T ++FPST++ + M EAF K RH EAQN SK P YIRNHADVLNLF
Sbjct: 554 SGDDAVLFLKAMTSKRFPSTSMFLRMFEAFFKHRRHEEAQNFLSKCPRYIRNHADVLNLF 613
>ref|XP_002329308.1| predicted protein [Populus trichocarpa] gi|222870762|gb|EEF07893.1|
predicted protein [Populus trichocarpa]
Length = 658
Score = 357 bits (915), Expect(2) = e-112
Identities = 201/489 (41%), Positives = 311/489 (63%), Gaps = 2/489 (0%)
Frame = +3
Query: 12 ITVLTDIIYKSNSNDEINNGLKSNDVLITHELVLSMLRSLDGNVEIARKFFKFVDESEKE 191
+ ++ D+ K + +D+IN L+ + V+I+H+LVL +L+SL +A++FF +V + + E
Sbjct: 87 VLLVCDVFTKFDDSDDINKELELSSVVISHDLVLKVLKSLGSKPGVAKRFFDWVLKKDSE 146
Query: 192 RLSSKCYNVMLGILGGRKDCVNEFWGLLEVMKKKKGYGISRRTYEKVVESFEKDGLVNDL 371
RLSSK YN MLGILG V EFW L++ MK K GYG+S T ++V+E FE +GL D+
Sbjct: 147 RLSSKSYNWMLGILGVN-GLVAEFWELVDKMKTK-GYGVSGVTRDRVLEKFENEGLKGDI 204
Query: 372 DRLKELYKRPD-DISMKSVASGIANVLRERDWEDLPDDVKERILGMNCVWSNELVKMVVE 548
++LK ++ D S++ + ++ ++R + W + DV+ I G++ +S+ LVK+V+E
Sbjct: 205 EKLKGVFATGSIDNSVEKIGLRMSRIVRSKFWGE---DVEGEIKGLSAEFSSGLVKIVLE 261
Query: 549 KLDGFPRKMILFIWWLQGNLSFKPDKFLYDGLLRVLASSHNVRQIHPIDPFWRIVEEMQG 728
L P K ++F W++ + K D Y+ + RVL S ID FW++++EM+
Sbjct: 262 HLAIEPMKALIFFRWVEESELCKHDGGSYNAMARVLGSKDC------IDRFWKVIDEMRS 315
Query: 729 VGYEMEMNTYFFVMGLFCKRRLIEDAVELYEYKMGSADKPPVQDGIFLLRKAVMWSKELN 908
G+EME+ T+ V+ F +R++I++AV+LYE+ M A+KP + +LLR V+ K+L+
Sbjct: 316 NGFEMEVETFDTVLAWFMRRKMIKEAVDLYEFAMNGANKPSSKYCTYLLRNIVV-CKQLD 374
Query: 909 MQLFSRVVETFTNGGNSLTTSILDMVVKSLISVNRLKECGTILKAMEKVGFVPTSEVYNK 1088
+ LFSR+V+ FT GN LT S+LD V+K+L SV R KEC IL+ M GFV + + K
Sbjct: 375 IGLFSRIVKVFTENGNVLTDSMLDAVLKALRSVGRFKECNKILREMMVAGFVASGNLQRK 434
Query: 1089 IIFHLGSVDRG-EAVLMISEMKASGNCPDSKTWTSLIHGQCLAGNAKSASYSFRTMVEEV 1265
I F L S + EA+ + M++SG+ D+K W SLI G C++G+ + AS F+ MVE+
Sbjct: 435 IAFGLTSAGKNYEAIEFVDHMESSGSDLDNKAWASLIEGHCVSGDLEKASDCFKKMVEKK 494
Query: 1266 GVTYAGHAFEEVLKGFCRKRKATDAYNFLSEMVGQHQLRPRHLAYKMLIQSLLVQGGFNE 1445
GVT AG+A E ++ +C K +A DA N L + V Q+QL P YK+LI LL QGGF +
Sbjct: 495 GVTGAGYAVELLVNAYCLKNRAGDACNLLCDYVCQNQLHPWRTTYKVLISKLLAQGGFKD 554
Query: 1446 ALSLLGLMK 1472
AL+LLGLM+
Sbjct: 555 ALNLLGLMQ 563
Score = 79.0 bits (193), Expect(2) = e-112
Identities = 38/64 (59%), Positives = 48/64 (75%)
Frame = +1
Query: 1561 TGDDAISFLKAVTDRKFPSTTVVVLMIEAFLKAGRHSEAQNCFSKSPSYIRNHADVLNLF 1740
TGDDAI+F+ A+T +KFPS +V + + EAF A RHSEAQ+ SK P +IRNHADVL LF
Sbjct: 583 TGDDAIAFMNAMTTKKFPSISVSLRLFEAFFNAKRHSEAQDFLSKCPVFIRNHADVLTLF 642
Query: 1741 VAHK 1752
+ K
Sbjct: 643 CSMK 646