BLASTX nr result
ID: Coptis21_contig00013658
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis21_contig00013658
(2172 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002280513.1| PREDICTED: pentatricopeptide repeat-containi... 558 e-156
ref|XP_003630737.1| Pentatricopeptide repeat-containing protein ... 516 e-144
gb|AFK47126.1| unknown [Medicago truncatula] 514 e-143
ref|XP_002889127.1| pentatricopeptide repeat-containing protein ... 512 e-142
ref|XP_004135378.1| PREDICTED: pentatricopeptide repeat-containi... 511 e-142
>ref|XP_002280513.1| PREDICTED: pentatricopeptide repeat-containing protein At1g77170
[Vitis vinifera] gi|297738768|emb|CBI28013.3| unnamed
protein product [Vitis vinifera]
Length = 479
Score = 558 bits (1438), Expect = e-156
Identities = 286/481 (59%), Positives = 346/481 (71%), Gaps = 7/481 (1%)
Frame = -2
Query: 2087 MIKFHPRLLILFRAQTSKCLTSLPSSPTFIQQNGFSNTQHQTQIEMNFNANSAHIS---- 1920
M F P LL L Q K P + + N + T H + NF + S
Sbjct: 1 MTSFQPPLLRLSIVQIPK-----PQTISRHLCNYLATTTHSVDAQFNFQPTAHPPSPDPI 55
Query: 1919 ---AQLIATHLSNCTSLHALNQIHTKIIRTSGVKLRENVFFWNSIIRSYVRFDSPSLALG 1749
AQ IA+HLS C +L LNQ+ IIRT ++L F WN+IIRSY R ++ AL
Sbjct: 56 QDTAQTIASHLSKCANLIELNQLLAHIIRTHFLELYPAPFQWNNIIRSYTRLEAHHYALS 115
Query: 1748 VYLLMARNNVHPDFYTIPIVLKAXXXXXXXXXXXXXXXVALKLGLDLFEFCESGFINLYT 1569
+Y+ M+R V PD YTIPIVLKA VA++ GL+L E+CESGFI++Y+
Sbjct: 116 IYIAMSRAGVSPDSYTIPIVLKAVCQAFATGFGRQVHSVAIRHGLELNEYCESGFISVYS 175
Query: 1568 KAGDFGNARKVFEQSPERKLGSWNAIICGLTHAGHAKEAINMFMELLKSGLEPDVVTMVG 1389
KAG+F NA KVFEQ+ RKLGSWNAII GL+ G AKEA+ MFME+ K G EPD VTMV
Sbjct: 176 KAGEFQNAHKVFEQNRFRKLGSWNAIIGGLSQGGRAKEAVTMFMEMRKCGFEPDEVTMVS 235
Query: 1388 VTSACGSLGDLNLGLQLHKCVFQAKRFEKSDMLMLNSLIDMYGKCGRMELAYKVFVGMVE 1209
VTSACGSLG L+L LQLHKCV+QAK E+SD L LNSL+DMYGKCGRM+LAY+VF M E
Sbjct: 236 VTSACGSLGHLDLALQLHKCVYQAKTSERSDTLTLNSLVDMYGKCGRMDLAYRVFSRMDE 295
Query: 1208 RSVLTWTSLIVGFAMHGHVRDALECFRCMREAGVRPNYVTFVGVLSACVHGGLVQEGRRY 1029
+V +WTS+IVG+AMHG + DALECFRCMREAGVRPN+VTF+GVLSACVHGG VQEG+ Y
Sbjct: 296 PNVSSWTSMIVGYAMHGQLYDALECFRCMREAGVRPNHVTFIGVLSACVHGGAVQEGKYY 355
Query: 1028 FNMMIDEYGIMPKLPHYGVMVDLLGRAGLLEEAKDMVENMPMEANVIIWGALMGACEKHG 849
F+MM YG++P++ HYG MVDLLGRAGLLEEA+ MVE MPM+ANVI+WG LMGACEK+G
Sbjct: 356 FDMMTTAYGLVPRMQHYGCMVDLLGRAGLLEEARKMVERMPMKANVIVWGCLMGACEKYG 415
Query: 848 SVEMAEWVAKHLEELEPWNDGVYVVLSNVYAGAGMWEEVERIRMIMKGRSVAKTPAYSAT 669
+V+M EWVA+HL ELEPWNDGV+VVLSN+YA G+W EVER+R +MK R + K PAYS
Sbjct: 416 NVKMGEWVAEHLLELEPWNDGVFVVLSNIYASRGLWREVERVRGVMKERKLDKVPAYSLA 475
Query: 668 T 666
T
Sbjct: 476 T 476
>ref|XP_003630737.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355524759|gb|AET05213.1| Pentatricopeptide
repeat-containing protein [Medicago truncatula]
Length = 447
Score = 516 bits (1329), Expect = e-144
Identities = 254/416 (61%), Positives = 314/416 (75%)
Frame = -2
Query: 1913 LIATHLSNCTSLHALNQIHTKIIRTSGVKLRENVFFWNSIIRSYVRFDSPSLALGVYLLM 1734
+IAT LSN T + LNQI+ I+ T ++ F WN+IIRSY R +SP AL +Y+ M
Sbjct: 29 VIATLLSNTTRIRDLNQIYAHILLTRFLESNPASFNWNNIIRSYTRLESPQNALRIYVSM 88
Query: 1733 ARNNVHPDFYTIPIVLKAXXXXXXXXXXXXXXXVALKLGLDLFEFCESGFINLYTKAGDF 1554
R V PD YT+PIVLKA +KLGL E+CESGFINLY KAGDF
Sbjct: 89 LRAGVLPDRYTLPIVLKAVSQSFAIQLGQQVHSYGIKLGLQSNEYCESGFINLYCKAGDF 148
Query: 1553 GNARKVFEQSPERKLGSWNAIICGLTHAGHAKEAINMFMELLKSGLEPDVVTMVGVTSAC 1374
+A KVF+++ E KLGSWNA+I GL+ G A +AI +F+++ + G EPD +TMV V SAC
Sbjct: 149 DSAHKVFDENHEPKLGSWNALISGLSQGGLAMDAIVVFVDMKRHGFEPDGITMVSVMSAC 208
Query: 1373 GSLGDLNLGLQLHKCVFQAKRFEKSDMLMLNSLIDMYGKCGRMELAYKVFVGMVERSVLT 1194
GS+GDL L LQLHK VFQAK E + +LM NSLIDMYGKCGRM+LAY+VF M +R+V +
Sbjct: 209 GSIGDLYLALQLHKYVFQAKTNEWTVILMSNSLIDMYGKCGRMDLAYEVFATMEDRNVSS 268
Query: 1193 WTSLIVGFAMHGHVRDALECFRCMREAGVRPNYVTFVGVLSACVHGGLVQEGRRYFNMMI 1014
WTS+IVG+AMHGH ++AL CF CMRE+GV+PNYVTF+GVLSACVHGG VQEGR YF+MM
Sbjct: 269 WTSMIVGYAMHGHAKEALGCFHCMRESGVKPNYVTFIGVLSACVHGGTVQEGRFYFDMMK 328
Query: 1013 DEYGIMPKLPHYGVMVDLLGRAGLLEEAKDMVENMPMEANVIIWGALMGACEKHGSVEMA 834
+ YGI P+L HYG MVDLLGRAGL ++A+ MVE MPM+ N ++WG LMGACEKHG+V+MA
Sbjct: 329 NIYGITPQLQHYGCMVDLLGRAGLFDDARRMVEEMPMKPNSVVWGCLMGACEKHGNVDMA 388
Query: 833 EWVAKHLEELEPWNDGVYVVLSNVYAGAGMWEEVERIRMIMKGRSVAKTPAYSATT 666
EWVA++L+ LEPWN+GVYVVLSN+YA G+W+EVERIR MK +AK PAYS TT
Sbjct: 389 EWVAENLQALEPWNEGVYVVLSNIYANKGLWKEVERIRSFMKEGRLAKIPAYSITT 444
>gb|AFK47126.1| unknown [Medicago truncatula]
Length = 447
Score = 514 bits (1324), Expect = e-143
Identities = 253/416 (60%), Positives = 313/416 (75%)
Frame = -2
Query: 1913 LIATHLSNCTSLHALNQIHTKIIRTSGVKLRENVFFWNSIIRSYVRFDSPSLALGVYLLM 1734
+IAT LSN T + LNQI+ I+ T ++ F WN+IIRSY R +SP AL +Y+ M
Sbjct: 29 VIATLLSNTTRIRDLNQIYAHILLTRFLESNPASFNWNNIIRSYTRLESPQNALRIYVSM 88
Query: 1733 ARNNVHPDFYTIPIVLKAXXXXXXXXXXXXXXXVALKLGLDLFEFCESGFINLYTKAGDF 1554
R V PD YT+PIVLKA +KLGL E+CESGFINLY KAGDF
Sbjct: 89 LRAGVLPDRYTLPIVLKAVSQSFAIQLGQQVHSYGIKLGLQSNEYCESGFINLYCKAGDF 148
Query: 1553 GNARKVFEQSPERKLGSWNAIICGLTHAGHAKEAINMFMELLKSGLEPDVVTMVGVTSAC 1374
+A KVF+++ E KLGSWNA+I GL+ G A +AI +F+++ + G EPD +TMV V AC
Sbjct: 149 DSAHKVFDENHEPKLGSWNALISGLSQGGLAMDAIVVFVDMKRHGFEPDGITMVSVMCAC 208
Query: 1373 GSLGDLNLGLQLHKCVFQAKRFEKSDMLMLNSLIDMYGKCGRMELAYKVFVGMVERSVLT 1194
GS+GDL L LQLHK VFQAK E + +LM NSLIDMYGKCGRM+LAY+VF M +R+V +
Sbjct: 209 GSIGDLYLALQLHKYVFQAKTNEWTVILMSNSLIDMYGKCGRMDLAYEVFATMEDRNVSS 268
Query: 1193 WTSLIVGFAMHGHVRDALECFRCMREAGVRPNYVTFVGVLSACVHGGLVQEGRRYFNMMI 1014
WTS+IVG+AMHGH ++AL CF CMRE+GV+PNYVTF+GVLSACVHGG VQEGR YF+MM
Sbjct: 269 WTSMIVGYAMHGHAKEALGCFHCMRESGVKPNYVTFIGVLSACVHGGTVQEGRFYFDMMK 328
Query: 1013 DEYGIMPKLPHYGVMVDLLGRAGLLEEAKDMVENMPMEANVIIWGALMGACEKHGSVEMA 834
+ YGI P+L HYG MVDLLGRAGL ++A+ MVE MPM+ N ++WG LMGACEKHG+V+MA
Sbjct: 329 NIYGITPQLQHYGCMVDLLGRAGLFDDARRMVEEMPMKPNSVVWGCLMGACEKHGNVDMA 388
Query: 833 EWVAKHLEELEPWNDGVYVVLSNVYAGAGMWEEVERIRMIMKGRSVAKTPAYSATT 666
EWVA++L+ LEPWN+GVYVVLSN+YA G+W+EVERIR MK +AK PAYS TT
Sbjct: 389 EWVAENLQALEPWNEGVYVVLSNIYANKGLWKEVERIRSFMKEGRLAKIPAYSITT 444
>ref|XP_002889127.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata] gi|297334968|gb|EFH65386.1|
pentatricopeptide repeat-containing protein [Arabidopsis
lyrata subsp. lyrata]
Length = 466
Score = 512 bits (1319), Expect = e-142
Identities = 254/414 (61%), Positives = 311/414 (75%)
Frame = -2
Query: 1916 QLIATHLSNCTSLHALNQIHTKIIRTSGVKLRENVFFWNSIIRSYVRFDSPSLALGVYLL 1737
+L+AT LSNCTSL + +IH I R+ + F WN+I+RSY+R DSP ++ VYL
Sbjct: 47 KLLATLLSNCTSLARVRRIHGDIFRSCILDQYPIAFLWNNIMRSYIRHDSPLDSVQVYLG 106
Query: 1736 MARNNVHPDFYTIPIVLKAXXXXXXXXXXXXXXXVALKLGLDLFEFCESGFINLYTKAGD 1557
M R+NV PD YT+PIV+KA VA++LG EFCESGFI LY KAG+
Sbjct: 107 MVRSNVLPDRYTLPIVIKAAVQIHDFPLGKQLHSVAVRLGFVGDEFCESGFITLYCKAGE 166
Query: 1556 FGNARKVFEQSPERKLGSWNAIICGLTHAGHAKEAINMFMELLKSGLEPDVVTMVGVTSA 1377
NAR VF+++PERKLGSWNAII GL HAG A EA+ MFME+ +SG EPD TMV VTSA
Sbjct: 167 LENARNVFDENPERKLGSWNAIIGGLNHAGRANEAVEMFMEMRRSGFEPDDFTMVSVTSA 226
Query: 1376 CGSLGDLNLGLQLHKCVFQAKRFEKSDMLMLNSLIDMYGKCGRMELAYKVFVGMVERSVL 1197
CG LGDLNL QLHKCV QAK EKSD++M+NSLIDMYGKCGRM+ A +VF M +R+V+
Sbjct: 227 CGGLGDLNLAFQLHKCVLQAKTEEKSDVMMMNSLIDMYGKCGRMDFAIQVFEEMPQRNVV 286
Query: 1196 TWTSLIVGFAMHGHVRDALECFRCMREAGVRPNYVTFVGVLSACVHGGLVQEGRRYFNMM 1017
+W+S+I G+A +G+ +ALECFR MRE GVRPN +TFVGVLSACVHGGLV+EG+ YF MM
Sbjct: 287 SWSSMITGYAANGNTLEALECFRQMREFGVRPNKITFVGVLSACVHGGLVEEGKAYFAMM 346
Query: 1016 IDEYGIMPKLPHYGVMVDLLGRAGLLEEAKDMVENMPMEANVIIWGALMGACEKHGSVEM 837
E+ + P L HYG +VDLL R G L+EAK +VE MPM+ NV++WG LMG CEK G VEM
Sbjct: 347 KSEFNLEPGLSHYGCIVDLLSRDGQLKEAKKVVEEMPMKPNVMVWGCLMGGCEKFGDVEM 406
Query: 836 AEWVAKHLEELEPWNDGVYVVLSNVYAGAGMWEEVERIRMIMKGRSVAKTPAYS 675
AEWVA ++ ELEPWNDGVYVVL+NVYA GMW++VER+R +MK + VAK PAYS
Sbjct: 407 AEWVAPYMVELEPWNDGVYVVLANVYALKGMWKDVERVRKVMKEKKVAKIPAYS 460
>ref|XP_004135378.1| PREDICTED: pentatricopeptide repeat-containing protein At1g77170-like
[Cucumis sativus]
Length = 609
Score = 511 bits (1315), Expect = e-142
Identities = 253/438 (57%), Positives = 320/438 (73%)
Frame = -2
Query: 1979 NTQHQTQIEMNFNANSAHISAQLIATHLSNCTSLHALNQIHTKIIRTSGVKLRENVFFWN 1800
N +T + + + + A+++AT L NCT++ L QIH ++RT+ ++ + F+WN
Sbjct: 169 NAVTETPFWLTYTSYNNMDHARIVATLLMNCTNVLELYQIHAHVLRTNMLENHPSSFYWN 228
Query: 1799 SIIRSYVRFDSPSLALGVYLLMARNNVHPDFYTIPIVLKAXXXXXXXXXXXXXXXVALKL 1620
IIRSY R + P +AL VY+ M R + PD YT+PIV KA VA++L
Sbjct: 229 IIIRSYTRLEVPRIALFVYIDMLRAGILPDCYTLPIVFKALSLAYAFDLGLQLHSVAIRL 288
Query: 1619 GLDLFEFCESGFINLYTKAGDFGNARKVFEQSPERKLGSWNAIICGLTHAGHAKEAINMF 1440
G + ++ ESG I+LY+K GD A KVFEQ+ RKLGSWNAII GL+ G AKEA+NMF
Sbjct: 289 GFEFDQYSESGLISLYSKIGDLECACKVFEQNHNRKLGSWNAIIAGLSQGGRAKEAVNMF 348
Query: 1439 MELLKSGLEPDVVTMVGVTSACGSLGDLNLGLQLHKCVFQAKRFEKSDMLMLNSLIDMYG 1260
++L +SGLEPD T+V VTSACGSLG+L L LQ+HK VFQ K KS++LMLNSLIDMYG
Sbjct: 349 IKLRQSGLEPDDFTIVSVTSACGSLGNLELSLQMHKFVFQVKVTGKSNILMLNSLIDMYG 408
Query: 1259 KCGRMELAYKVFVGMVERSVLTWTSLIVGFAMHGHVRDALECFRCMREAGVRPNYVTFVG 1080
KCGRM+LA KVF M R+V +WTSLIVG+AMHG V+ ALE F+ MREAGV PN VTFVG
Sbjct: 409 KCGRMDLAMKVFSNMGHRNVSSWTSLIVGYAMHGQVKQALENFQFMREAGVPPNQVTFVG 468
Query: 1079 VLSACVHGGLVQEGRRYFNMMIDEYGIMPKLPHYGVMVDLLGRAGLLEEAKDMVENMPME 900
VLSACVHGG++ EG+ YF+MM + YG P+LPHYG MVDLL +AGLLEEA+ M+E MPM+
Sbjct: 469 VLSACVHGGMINEGKHYFDMMKNVYGFKPQLPHYGCMVDLLSKAGLLEEARRMIEEMPMK 528
Query: 899 ANVIIWGALMGACEKHGSVEMAEWVAKHLEELEPWNDGVYVVLSNVYAGAGMWEEVERIR 720
AN IIWG L+G CEKHG+VE+ EW KHL+ELEPWNDGVYVVLSN+YA GMW+E +++R
Sbjct: 529 ANSIIWGCLIGGCEKHGNVEIGEWAGKHLQELEPWNDGVYVVLSNIYATNGMWKEAQKMR 588
Query: 719 MIMKGRSVAKTPAYSATT 666
+MK R +AK P YS T
Sbjct: 589 DVMKQRQLAKVPGYSLAT 606