BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00013638
         (954 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002279095.1| PREDICTED: cleavage and polyadenylation spec...   290   5e-76
emb|CBI27869.3| unnamed protein product [Vitis vinifera]              290   5e-76
ref|XP_002514092.1| pre-mRNA cleavage factor im, 25kD subunit, p...   281   1e-73
ref|XP_004141062.1| PREDICTED: cleavage and polyadenylation spec...   279   8e-73
ref|XP_002308275.1| predicted protein [Populus trichocarpa] gi|2...   278   1e-72

>ref|XP_002279095.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
           5-like [Vitis vinifera]
          Length = 284

 Score =  290 bits (741), Expect = 5e-76
 Identities = 138/211 (65%), Positives = 168/211 (79%)
 Frame = +1

Query: 37  SDREMDSSTEQSNRNTSTVNIYPLSNYYFGSKQSLNIKDETQAEHAQRMKANYATHGLRT 216
           +D +  SS + SN     ++IYPLS YYFGSK  L +K+ET A+   RMK+NY+ +G RT
Sbjct: 76  ADGDRSSSGDSSNH---VLDIYPLSCYYFGSKDPLLLKEETLADRILRMKSNYSRYGSRT 132

Query: 217 CVEAVLVVELHKHPHLLVFQVRNSTFKLPGGRLRPGESEVDGLKRKLSSKLCDDEDGSDT 396
           CV AV++VEL KHPHLL+ QV+NS FKLPGGRLRPGESE++GLKRKLS KL  +EDG  +
Sbjct: 133 CVVAVILVELFKHPHLLLLQVKNSFFKLPGGRLRPGESEINGLKRKLSRKLSVNEDGDGS 192

Query: 397 DWEVGECVGMWWRSDFETLAYPYFPTSLRRPKECTKLFLVKLPVSKRLIAPKNLKLLAVP 576
           DWEVGEC+GMWWR DFETL YPY P +++ PKECTKLFLVKLP S++ I PKNLKLLA+P
Sbjct: 193 DWEVGECLGMWWRPDFETLLYPYLPPNVKNPKECTKLFLVKLPPSRKFIVPKNLKLLAIP 252

Query: 577 FYGIHENDKTYGQVISGVPMLLSKFIFNIIE 669
              +HENDKTYG +I+GVP LLSKF FNII+
Sbjct: 253 LCQLHENDKTYGPIIAGVPQLLSKFSFNIID 283


>emb|CBI27869.3| unnamed protein product [Vitis vinifera]
          Length = 291

 Score =  290 bits (741), Expect = 5e-76
 Identities = 138/211 (65%), Positives = 168/211 (79%)
 Frame = +1

Query: 37  SDREMDSSTEQSNRNTSTVNIYPLSNYYFGSKQSLNIKDETQAEHAQRMKANYATHGLRT 216
           +D +  SS + SN     ++IYPLS YYFGSK  L +K+ET A+   RMK+NY+ +G RT
Sbjct: 83  ADGDRSSSGDSSNH---VLDIYPLSCYYFGSKDPLLLKEETLADRILRMKSNYSRYGSRT 139

Query: 217 CVEAVLVVELHKHPHLLVFQVRNSTFKLPGGRLRPGESEVDGLKRKLSSKLCDDEDGSDT 396
           CV AV++VEL KHPHLL+ QV+NS FKLPGGRLRPGESE++GLKRKLS KL  +EDG  +
Sbjct: 140 CVVAVILVELFKHPHLLLLQVKNSFFKLPGGRLRPGESEINGLKRKLSRKLSVNEDGDGS 199

Query: 397 DWEVGECVGMWWRSDFETLAYPYFPTSLRRPKECTKLFLVKLPVSKRLIAPKNLKLLAVP 576
           DWEVGEC+GMWWR DFETL YPY P +++ PKECTKLFLVKLP S++ I PKNLKLLA+P
Sbjct: 200 DWEVGECLGMWWRPDFETLLYPYLPPNVKNPKECTKLFLVKLPPSRKFIVPKNLKLLAIP 259

Query: 577 FYGIHENDKTYGQVISGVPMLLSKFIFNIIE 669
              +HENDKTYG +I+GVP LLSKF FNII+
Sbjct: 260 LCQLHENDKTYGPIIAGVPQLLSKFSFNIID 290


>ref|XP_002514092.1| pre-mRNA cleavage factor im, 25kD subunit, putative [Ricinus
           communis] gi|223546548|gb|EEF48046.1| pre-mRNA cleavage
           factor im, 25kD subunit, putative [Ricinus communis]
          Length = 214

 Score =  281 bits (720), Expect = 1e-73
 Identities = 136/214 (63%), Positives = 163/214 (76%), Gaps = 3/214 (1%)
 Frame = +1

Query: 34  MSDREM---DSSTEQSNRNTSTVNIYPLSNYYFGSKQSLNIKDETQAEHAQRMKANYATH 204
           M D E+   ++  E S      ++IYPLS YYFGSK  L  +DET  +  QRMK+NY  H
Sbjct: 1   MGDHEVVVNNNHHEASRDQGFVLDIYPLSRYYFGSKDPLPFRDETLVDRVQRMKSNYLAH 60

Query: 205 GLRTCVEAVLVVELHKHPHLLVFQVRNSTFKLPGGRLRPGESEVDGLKRKLSSKLCDDED 384
           GLRTCVEAV++VEL KHPHLL+ Q++NS FKLPGGR+RPGES++ GLKRKLS KL +++D
Sbjct: 61  GLRTCVEAVILVELFKHPHLLLLQIKNSIFKLPGGRIRPGESDIGGLKRKLSRKLSNNQD 120

Query: 385 GSDTDWEVGECVGMWWRSDFETLAYPYFPTSLRRPKECTKLFLVKLPVSKRLIAPKNLKL 564
              TDWEVGEC+GMWWR DFETL YPY P +L+ PKECTKLFLV+LP S + I PKNLKL
Sbjct: 121 --QTDWEVGECLGMWWRPDFETLLYPYLPPNLKTPKECTKLFLVRLPTSCKFIVPKNLKL 178

Query: 565 LAVPFYGIHENDKTYGQVISGVPMLLSKFIFNII 666
           LAVP   IH+N KTYG +ISGVP LLSK+ F II
Sbjct: 179 LAVPLSQIHDNHKTYGGIISGVPQLLSKYSFRII 212


>ref|XP_004141062.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
           5-like [Cucumis sativus]
           gi|449488056|ref|XP_004157928.1| PREDICTED: cleavage and
           polyadenylation specificity factor subunit 5-like
           [Cucumis sativus]
          Length = 217

 Score =  279 bits (713), Expect = 8e-73
 Identities = 130/206 (63%), Positives = 158/206 (76%)
 Frame = +1

Query: 49  MDSSTEQSNRNTSTVNIYPLSNYYFGSKQSLNIKDETQAEHAQRMKANYATHGLRTCVEA 228
           +D     S    S ++IYPLSNYYFGSK+ L  KDET ++   RMK+NYA HGLRTCVEA
Sbjct: 10  IDDDDASSAHQLSYIDIYPLSNYYFGSKEPLLFKDETLSDRVLRMKSNYAAHGLRTCVEA 69

Query: 229 VLVVELHKHPHLLVFQVRNSTFKLPGGRLRPGESEVDGLKRKLSSKLCDDEDGSDTDWEV 408
           V++VEL KHPHLL+FQ+RNS FKLPGGR+RP ES++DGL RKL+ KL  +     + WEV
Sbjct: 70  VMLVELFKHPHLLLFQIRNSIFKLPGGRIRPNESDIDGLTRKLTKKLSANGASDASHWEV 129

Query: 409 GECVGMWWRSDFETLAYPYFPTSLRRPKECTKLFLVKLPVSKRLIAPKNLKLLAVPFYGI 588
            EC+GMWWR DFETL +PY  T+++  KECTKLFLVKLP S++ + PKNLKL+AVP   I
Sbjct: 130 SECLGMWWRPDFETLLFPYLSTNVKGAKECTKLFLVKLPESRKFVVPKNLKLIAVPLCQI 189

Query: 589 HENDKTYGQVISGVPMLLSKFIFNII 666
           HEN KTYG +ISG+P LLSKF FNII
Sbjct: 190 HENHKTYGPIISGIPQLLSKFSFNII 215


>ref|XP_002308275.1| predicted protein [Populus trichocarpa] gi|222854251|gb|EEE91798.1|
           predicted protein [Populus trichocarpa]
          Length = 210

 Score =  278 bits (711), Expect = 1e-72
 Identities = 130/201 (64%), Positives = 161/201 (80%)
 Frame = +1

Query: 61  TEQSNRNTSTVNIYPLSNYYFGSKQSLNIKDETQAEHAQRMKANYATHGLRTCVEAVLVV 240
           T+ +N  ++ + IYPL +YYFGSK  +  +DET A+  QRMK+N++  GLRT V+AV++V
Sbjct: 9   TDNNNHQSTVIEIYPLGSYYFGSKDPIAFRDETIADRVQRMKSNFSARGLRTSVQAVMLV 68

Query: 241 ELHKHPHLLVFQVRNSTFKLPGGRLRPGESEVDGLKRKLSSKLCDDEDGSDTDWEVGECV 420
           EL KHPHLL+ QVRN+ FKLPGGRLRPGES++DGL+RKLS  L  +ED +D  WEVG+C+
Sbjct: 69  ELFKHPHLLLLQVRNAFFKLPGGRLRPGESDIDGLQRKLSRMLSVNEDETD-HWEVGDCL 127

Query: 421 GMWWRSDFETLAYPYFPTSLRRPKECTKLFLVKLPVSKRLIAPKNLKLLAVPFYGIHEND 600
           GMWWRSDFETL YPY P +L+ PKECTKL++VKLP S++ I PKNLKLLAVP   +HEN 
Sbjct: 128 GMWWRSDFETLLYPYLPPNLKVPKECTKLYVVKLPASRKFIVPKNLKLLAVPLCQVHENH 187

Query: 601 KTYGQVISGVPMLLSKFIFNI 663
           KTYG VISGVP LLSKF FNI
Sbjct: 188 KTYGPVISGVPQLLSKFSFNI 208