BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00013545
         (1098 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003544432.1| PREDICTED: pentatricopeptide repeat-containi...   122   1e-29
ref|XP_002273156.2| PREDICTED: pentatricopeptide repeat-containi...   123   4e-28
emb|CBI24939.3| unnamed protein product [Vitis vinifera]              123   4e-28
ref|XP_004135941.1| PREDICTED: pentatricopeptide repeat-containi...   114   2e-26
ref|XP_003599420.1| Pentatricopeptide repeat-containing protein ...   122   1e-25

>ref|XP_003544432.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g53170-like [Glycine max]
          Length = 481

 Score =  122 bits (307), Expect(2) = 1e-29
 Identities = 62/126 (49%), Positives = 85/126 (67%), Gaps = 1/126 (0%)
 Frame = -1

Query: 915 LLCKQDWCIPRCRTLTKIFIILGKR*QPGFASLINEKIWLKGSNPLLRFCAFLISVYGLS 736
           LL KQ W  PRCRT  K+ ++LGK  QP  ASL+ E +  +G  P +     L+S YG S
Sbjct: 113 LLRKQYWYQPRCRTYAKLLMMLGKCRQPEEASLLFEIMLSEGLKPTVDVYTALVSAYGQS 172

Query: 735 GHFEEAFGTVDGMKSVTDCK-NIYTYLVLMNCCS*FHHFDLIERALKDMSHMGIKCSIVT 559
           G  ++AF TV+ MKSV DC+ ++YTY +L+ CC+ F  FDLIE  L +MS++GIKC+ VT
Sbjct: 173 GLLDQAFSTVEDMKSVVDCEPDVYTYSILIRCCAKFRRFDLIEHVLAEMSYLGIKCNCVT 232

Query: 558 YNILIE 541
           YN +I+
Sbjct: 233 YNSIID 238



 Score = 34.3 bits (77), Expect(2) = 1e-29
 Identities = 14/26 (53%), Positives = 17/26 (65%)
 Frame = -3

Query: 529 AEVLEQMEKLLKDMIRNNKCHPDVYT 452
           A + EQM+  L DMI N   HPDV+T
Sbjct: 243 ASMFEQMDDALNDMIENGNSHPDVFT 268


>ref|XP_002273156.2| PREDICTED: pentatricopeptide repeat-containing protein
           At3g53170-like [Vitis vinifera]
          Length = 538

 Score =  123 bits (309), Expect(2) = 4e-28
 Identities = 63/126 (50%), Positives = 86/126 (68%), Gaps = 1/126 (0%)
 Frame = -1

Query: 915 LLCKQDWCIPRCRTLTKIFIILGKR*QPGFASLINEKIWLKGSNPLLRFCAFLISVYGLS 736
           LL KQ W  PRC+T TK+ ++LGK  QP  ASL+ E +  +G  P L     L+S YG S
Sbjct: 117 LLRKQHWYEPRCQTYTKLLMMLGKCKQPEQASLLFEVMLSEGLRPTLDVYTALVSAYGHS 176

Query: 735 GHFEEAFGTVDGMKSVTDCK-NIYTYLVLMNCCS*FHHFDLIERALKDMSHMGIKCSIVT 559
           G  ++AF TV+ MKSV+DCK ++YTY +L+ CC+    FDLIER   +MS++GI+CS VT
Sbjct: 177 GQLDKAFCTVEDMKSVSDCKPDVYTYSILIKCCTTLGRFDLIERIFTEMSYLGIECSTVT 236

Query: 558 YNILIE 541
           YN +I+
Sbjct: 237 YNTIID 242



 Score = 28.5 bits (62), Expect(2) = 4e-28
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -3

Query: 529 AEVLEQMEKLLKDMIRNNKCHPDVYT 452
           A++ E ME  L +MI +  C PD++T
Sbjct: 247 ADMFELMESSLTEMIESGTCLPDIFT 272


>emb|CBI24939.3| unnamed protein product [Vitis vinifera]
          Length = 485

 Score =  123 bits (309), Expect(2) = 4e-28
 Identities = 63/126 (50%), Positives = 86/126 (68%), Gaps = 1/126 (0%)
 Frame = -1

Query: 915 LLCKQDWCIPRCRTLTKIFIILGKR*QPGFASLINEKIWLKGSNPLLRFCAFLISVYGLS 736
           LL KQ W  PRC+T TK+ ++LGK  QP  ASL+ E +  +G  P L     L+S YG S
Sbjct: 117 LLRKQHWYEPRCQTYTKLLMMLGKCKQPEQASLLFEVMLSEGLRPTLDVYTALVSAYGHS 176

Query: 735 GHFEEAFGTVDGMKSVTDCK-NIYTYLVLMNCCS*FHHFDLIERALKDMSHMGIKCSIVT 559
           G  ++AF TV+ MKSV+DCK ++YTY +L+ CC+    FDLIER   +MS++GI+CS VT
Sbjct: 177 GQLDKAFCTVEDMKSVSDCKPDVYTYSILIKCCTTLGRFDLIERIFTEMSYLGIECSTVT 236

Query: 558 YNILIE 541
           YN +I+
Sbjct: 237 YNTIID 242



 Score = 28.5 bits (62), Expect(2) = 4e-28
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -3

Query: 529 AEVLEQMEKLLKDMIRNNKCHPDVYT 452
           A++ E ME  L +MI +  C PD++T
Sbjct: 247 ADMFELMESSLTEMIESGTCLPDIFT 272


>ref|XP_004135941.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g53170-like [Cucumis sativus]
           gi|449514880|ref|XP_004164505.1| PREDICTED:
           pentatricopeptide repeat-containing protein
           At3g53170-like [Cucumis sativus]
          Length = 477

 Score =  114 bits (286), Expect(2) = 2e-26
 Identities = 57/125 (45%), Positives = 84/125 (67%), Gaps = 1/125 (0%)
 Frame = -1

Query: 915 LLCKQDWCIPRCRTLTKIFIILGKR*QPGFASLINEKIWLKGSNPLLRFCAFLISVYGLS 736
           LL +Q W  PRC+T TK+ ++LGK  QP  ASL+ E ++ +G  P +     L+S YG S
Sbjct: 116 LLRQQQWYEPRCQTYTKLLMLLGKCKQPEQASLLFEIMFSEGLKPSIDVYTALVSAYGQS 175

Query: 735 GHFEEAFGTVDGMKSVTDCK-NIYTYLVLMNCCS*FHHFDLIERALKDMSHMGIKCSIVT 559
           G   +A  TVD MKS++DCK +++TY +L++CC+    FDL+++ L DMS +GI C+ VT
Sbjct: 176 GLLHKAISTVDEMKSISDCKPDVHTYSILIDCCTRLRRFDLLKKILADMSCLGITCNTVT 235

Query: 558 YNILI 544
           YN +I
Sbjct: 236 YNTII 240



 Score = 31.6 bits (70), Expect(2) = 2e-26
 Identities = 13/26 (50%), Positives = 19/26 (73%)
 Frame = -3

Query: 529 AEVLEQMEKLLKDMIRNNKCHPDVYT 452
           A++ EQME LL +MI ++ C PD+ T
Sbjct: 246 AKMFEQMESLLLEMIESDSCPPDLIT 271


>ref|XP_003599420.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355488468|gb|AES69671.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 511

 Score =  122 bits (307), Expect = 1e-25
 Identities = 64/143 (44%), Positives = 89/143 (62%), Gaps = 1/143 (0%)
 Frame = -1

Query: 927 LVL*LLCKQDWCIPRCRTLTKIFIILGKR*QPGFASLINEKIWLKGSNPLLRFCAFLISV 748
           ++  LL  Q W  PRC+T TK+ ++L K  QP  AS + E +  +G  P +     L+S 
Sbjct: 117 MIFELLRNQYWYEPRCQTYTKLLMMLSKCKQPKEASQLYETMLFEGLKPTVDVLTALVSA 176

Query: 747 YGLSGHFEEAFGTVDGMKSVTDCK-NIYTYLVLMNCCS*FHHFDLIERALKDMSHMGIKC 571
           YG SG F  AF T++ MKSV DCK ++YTY VL++CC+ F  FDLIER L DMS+ GI+C
Sbjct: 177 YGQSGLFRHAFSTIEDMKSVVDCKPDVYTYSVLISCCAKFRRFDLIERVLADMSYSGIEC 236

Query: 570 SIVTYNILIE*CDKLRCLNRWKN 502
           + VTYN +I+   K     + +N
Sbjct: 237 NSVTYNSIIDGYGKAGMFEQMEN 259